FvH4_7g11390

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017953
Physical Location & Seq
Reverse (-)
10582699 .. 10583669
971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11390.t1

Sequence Viewer

Length: 648 bp
ATGGCCAAACATTGCCTTTCTTTTCTGCTAATCCTCCTTTCCATCTTCTCCCTTTTGAGCACGGTGGAGCCTTCCTTTGCCGGGCATACTGCTCATCGACGTTCCAGGGCTCGAGCCAACATCGAAGCTGCATGCAAAGGCACTCTCTACCCGGACCTATGTATCCACTGCCTCACCACCTACGTAAAACCCAACACGACAATCCAAAGCCCCCAGGAACTCGCCCATGTAGCCCTAACTGCAAGCCTCTACCGTGCCCTATATGCTAGGGCCTTTGTGCTCAAGGTGGCAAAAGAGATCGACATACTCAAGAGGGAGAACCAAGTTGTTCGAGATTGCTTGCAGCAGATTAACGATAGCGTGGACCAACTCAGTGGATCGATCAAGGAACTACGTCGGTTGGGGAATAGCCCTGTGGGTGACGACCTGTTTTGGCACATAAGCAACGTGGAGACATGGGTTGGGACTGCCCTAACTGATGCAAGTACTTGTGTGGATGAGCTTCCCGGACCAAACATGAGCAAACTGAAGGCGACTATCAAAGGGAAATTTCTCAATGTGGCTCAAACGACTAGTAATGCACTAGCTTTGTTTCATAGATTTGCTGTAAGGTATAAAGCTGCAGCCAGTGCCACCAAGAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

216

Amino Acids

23.68

Weight (kDa)

9.39

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 40 - 197 4.5e-33 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00080
fragaria_vesca FvH4_7g11390
prunus_persica Prupe.2G141800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349671
rosa_laevigata RLG00000028536
rosa_roxburghii Rroxscaffold_4G00305390
rosa_rugosa Rorug01G0204900
rosa_samantha Rh1AG222500 Rh1BG188500 Rh1DG217700
rosa_wichuraiana Rw1G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 81
AhlI ACTAGT 1 cut(s) 572
AjnI CCWGG 2 cut(s) 104, 213
AluBI AGCT 4 cut(s) 128, 502, 587, 620
AluI AGCT 4 cut(s) 128, 502, 587, 620
Alw21I GWGCWC 2 cut(s) 62, 282
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 2 cut(s) 3, 270
ApeKI GCWGC 4 cut(s) 128, 343, 620, 623
ApoI RAATTY 1 cut(s) 548
AspS9I GGNCC 4 cut(s) 154, 270, 364, 509
AsuC2I CCSGG 3 cut(s) 82, 152, 507
AsuHPI GGTGA 2 cut(s) 166, 431
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 3 cut(s) 154, 364, 509
BaeGI GKGCMC 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 62, 282
BbvI GCAGC 4 cut(s) 115, 355, 607, 635
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 106, 215
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 3 cut(s) 82, 152, 507
BcoDI GTCTC 1 cut(s) 446
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 4 cut(s) 267, 573, 584, 646
BfmI CTRYAG 1 cut(s) 621
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 4 cut(s) 129, 344, 621, 624
BlsI GCNGC 4 cut(s) 130, 345, 622, 625
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 5 cut(s) 82, 106, 152, 215, 507
Bme18I GGWCC 3 cut(s) 154, 364, 509
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 4 cut(s) 154, 270, 364, 509
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 5 cut(s) 82, 106, 152, 215, 507
BmsI GCATC 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 266, 293
BpuMI CCSGG 3 cut(s) 82, 152, 507
Bsa29I ATCGAT 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 105, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 10
BseBI CCWGG 2 cut(s) 106, 215
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 105, 213
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 4 cut(s) 115, 355, 607, 635
BshFI GGCC 2 cut(s) 5, 272
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 62, 282
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 81, 152, 507
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 2 cut(s) 5, 272
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 4 cut(s) 62, 112, 259, 282
Bsp143I GATC 3 cut(s) 297, 377, 381
BspANI GGCC 2 cut(s) 5, 272
BspCNI CTCAG 1 cut(s) 384
BspDI ATCGAT 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 105, 213
BssMI GATC 3 cut(s) 297, 377, 381
Bst2UI CCWGG 2 cut(s) 106, 215
Bst4CI ACNGT 2 cut(s) 64, 254
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 133, 244, 341
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 3 cut(s) 300, 380, 384
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 3 cut(s) 297, 377, 381
BstMWI GCNNNNNNNGC 4 cut(s) 230, 239, 263, 629
BstNI CCWGG 2 cut(s) 106, 215
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 5 cut(s) 80, 104, 150, 213, 505
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 259
BstSNI TACGTA 1 cut(s) 184
BstV1I GCAGC 4 cut(s) 115, 355, 607, 635
BstXI CCANNNNNNTGG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 380
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 5, 272
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 3 cut(s) 166, 379, 634
Cac8I GCNNGC 3 cut(s) 133, 244, 341
Cfr13I GGNCC 4 cut(s) 154, 270, 364, 509
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 1 cut(s) 486
CviAII CATG 4 cut(s) 132, 227, 456, 517
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 1 cut(s) 371
DpnI GATC 3 cut(s) 299, 379, 383
DpnII GATC 3 cut(s) 297, 377, 381
EaeI YGGCCR 1 cut(s) 3
Eco105I TACGTA 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 3 cut(s) 154, 364, 509
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 104, 213
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 4 cut(s) 135, 230, 459, 520
FaqI GGGAC 1 cut(s) 478
FatI CATG 4 cut(s) 131, 226, 455, 516
Fnu4HI GCNGC 4 cut(s) 129, 344, 621, 624
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 129, 344, 621, 624
FspBI CTAG 4 cut(s) 267, 573, 584, 646
GluI GCNGC 4 cut(s) 129, 344, 621, 624
HaeIII GGCC 2 cut(s) 5, 272
HapII CCGG 3 cut(s) 81, 152, 507
Hin1II CATG 4 cut(s) 135, 230, 459, 520
HpaII CCGG 3 cut(s) 81, 152, 507
HphI GGTGA 2 cut(s) 166, 431
Hpy166II GTNNAC 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 310, 332
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 2 cut(s) 102, 399
HpyAV CCTTC 2 cut(s) 81, 523
HpyCH4III ACNGT 2 cut(s) 64, 254
HpyCH4IV ACGT 4 cut(s) 100, 183, 394, 447
HpyCH4V TGCA 7 cut(s) 131, 135, 242, 343, 482, 581, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 239, 263, 629
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 4 cut(s) 100, 183, 394, 447
Hsp92II CATG 4 cut(s) 135, 230, 459, 520
Kzo9I GATC 3 cut(s) 297, 377, 381
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 4 cut(s) 115, 355, 607, 635
LweI GCATC 1 cut(s) 469
MaeI CTAG 4 cut(s) 267, 573, 584, 646
MaeII ACGT 4 cut(s) 100, 183, 394, 447
MaeIII GTNAC 1 cut(s) 419
MalI GATC 3 cut(s) 299, 379, 383
MboI GATC 3 cut(s) 297, 377, 381
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 4 cut(s) 62, 112, 259, 282
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 44, 182, 257, 306
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 81, 152, 507
MspR9I CCNGG 5 cut(s) 82, 106, 152, 215, 507
MvaI CCWGG 2 cut(s) 106, 215
MwoI GCNNNNNNNGC 4 cut(s) 230, 239, 263, 629
NciI CCSGG 3 cut(s) 82, 152, 507
NdeII GATC 3 cut(s) 297, 377, 381
NlaIII CATG 4 cut(s) 135, 230, 459, 520
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 135
PaeI GCATGC 1 cut(s) 135
PaeR7I CTCGAG 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 4 cut(s) 130, 345, 622, 625
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 104, 213
PspGI CCWGG 2 cut(s) 104, 213
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 4 cut(s) 154, 270, 364, 509
PspXI VCTCGAGB 1 cut(s) 111
PstI CTGCAG 1 cut(s) 625
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 129, 344, 621, 624
Sau3AI GATC 3 cut(s) 297, 377, 381
Sau96I GGNCC 4 cut(s) 154, 270, 364, 509
ScaI AGTACT 1 cut(s) 487
ScrFI CCNGG 5 cut(s) 82, 106, 152, 215, 507
SduI GDGCHC 4 cut(s) 62, 112, 259, 282
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 621
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 3 cut(s) 154, 364, 509
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 3 cut(s) 111, 281, 308
SmoI CTYRAG 3 cut(s) 111, 281, 308
SnaBI TACGTA 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 572
SphI GCATGC 1 cut(s) 135
Sse9I AATT 1 cut(s) 548
SspMI CTAG 4 cut(s) 267, 573, 584, 646
StyD4I CCNGG 5 cut(s) 80, 104, 150, 213, 505
TaaI ACNGT 2 cut(s) 64, 254
TaiI ACGT 4 cut(s) 103, 186, 397, 450
TaqI TCGA 6 cut(s) 97, 112, 123, 300, 331, 380
TasI AATT 1 cut(s) 548
TatI WGTACW 1 cut(s) 485
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 3 cut(s) 173, 379, 634
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 4 cut(s) 128, 343, 620, 623
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 584
TspRI CASTG 3 cut(s) 173, 379, 634
VpaK11BI GGWCC 3 cut(s) 154, 364, 509
XapI RAATTY 1 cut(s) 548
XceI RCATGY 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 4 cut(s) 267, 573, 584, 646
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.