Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018072

Physical Location & Seq

Genomic Coordinates Forward (+)

11049729 .. 11051008

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTTTGATGCATGCTATGTTTTCTTCACTTGCATCTCGTTACATGTTTCACCCTCCGGAGTTACCGTTCTACACACTGAATGAGGAGGAAGGGAGCAAGAAGCTAAAGCTACGGTTGAGACATATTTTGAACCCAAACATTCCTAGTTGTAAGCCAGAGTATTTAGAAACTCTAGACATCTTTAAGATCAGAACCAAGAGAGGGAATGATATTGTGGCACTGTATGTTAAGAACCCCTCGGCGTCGTTGACTATTCTATACTCGCACACTAATGCAGAAGATTTGGGTGTTCTATTGAGGGACAAAAGCTTCAGGGAGCTCAGCAATGACCTTGGAATGAATGTGATGGTGTATGATTACTCCGGTTACGGCCAATCAACTGGGAAGCCAAGTGAGAAAGACACTTATGCAGATATAGAAGCTGCGTATGGATGCCTTGTGGACAGGTATGGTGCAAAGGAGGAAGATGTTATCTTATATGGGAGATCCATTGGTTCTGGACCAACAATAGACCTTGCAACCCGGTTGCCGAAACTGAGGGGTGTGGTTCTTGAAAGTGGTATCACATCTGTCTTTCGGGTTGCATCTCTTGCATTTTGTGGCGTAGTGTCGAAGCGACGATCATATTCGTTTGACATATATAAGAACCTAGAGAAAATAGCTTTGGCTAGTTGTGGTGATTCATGGAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

233

Amino Acids

26.02

Weight (kDa)

8.55

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	110 - 189	1.9e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0018072)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12140
rosa_chinensis	RchiOBHm_Chr1g0350901
rosa_laevigata	RLG00000028445
rosa_multiflora	Rmu_sc0014584.1_g000011
rosa_roxburghii	Rroxscaffold_4G00304430
rosa_rugosa	Rorug01G0215100
rosa_samantha	Rh1AG229400 Rh1BG199400 Rh1CG214200 Rh1DG227300
rosa_wichuraiana	Rw1G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	58
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	204
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	133, 557
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	106, 112, 312, 322, 425, 665
AluI	AGCT	6 cut(s)	106, 112, 312, 322, 425, 665
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	44, 692
AvaII	GGWCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	4 cut(s)	147, 176, 653, 672
BisI	GCNGC	1 cut(s)	426
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	526
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	44, 425, 596
BmuI	ACTGGG	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	240, 334
BsaWI	WCCGGW	2 cut(s)	58, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	240, 334
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	337, 530
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	59, 366, 526
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	189, 488, 623
Bsp1720I	GCTNAGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	336, 531
BspEI	TCCGGA	1 cut(s)	58
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	240, 334
BssMI	GATC	3 cut(s)	189, 488, 623
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	69, 117, 225
BstACI	GRCGYC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	323, 539
BstF5I	GGATG	1 cut(s)	440
BstKTI	GATC	3 cut(s)	192, 491, 626
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	189, 488, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	17, 49
BstSCI	CCNGG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	77, 221
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	234
CviAII	CATG	3 cut(s)	14, 46, 687
DdeI	CTNAG	2 cut(s)	323, 539
DpnI	GATC	3 cut(s)	191, 490, 625
DpnII	GATC	3 cut(s)	189, 488, 623
EaeI	YGGCCR	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	17, 49, 690
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	13, 45, 686
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	447
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	4 cut(s)	147, 176, 653, 672
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	3 cut(s)	59, 366, 526
HgaI	GACGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	17, 49, 690
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	683
HpaII	CCGG	3 cut(s)	59, 366, 526
HphI	GGTGA	2 cut(s)	44, 692
Hpy166II	GTNNAC	2 cut(s)	252, 445
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	4 cut(s)	59, 176, 501, 554
Hpy8I	GTNNAC	2 cut(s)	252, 445
Hpy99I	CGWCG	2 cut(s)	250, 624
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	69, 117, 225
HpyCH4V	TGCA	8 cut(s)	13, 35, 278, 413, 458, 521, 587, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	323, 539
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	17, 49, 690
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	189, 488, 623
LmnI	GCTCC	2 cut(s)	96, 319
LpnPI	CCDG	8 cut(s)	72, 171, 301, 369, 379, 433, 486, 539
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	3 cut(s)	44, 425, 596
MaeI	CTAG	4 cut(s)	147, 176, 653, 672
MaeIII	GTNAC	3 cut(s)	41, 63, 368
MalI	GATC	3 cut(s)	191, 490, 625
MboI	GATC	3 cut(s)	189, 488, 623
MboII	GAAGA	3 cut(s)	18, 293, 479
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	324
MnlI	CCTC	8 cut(s)	66, 79, 82, 197, 250, 294, 457, 534
Mph1103I	ATGCAT	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	2 cut(s)	186, 231
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	3 cut(s)	59, 366, 526
MspR9I	CCNGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	3 cut(s)	189, 488, 623
NlaIII	CATG	3 cut(s)	17, 49, 690
NmeAIII	GCCGAG	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	2 cut(s)	17, 49
PaeI	GCATGC	1 cut(s)	17
PciI	ACATGT	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	427
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	186, 231
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	189, 488, 623
Sau96I	GGNCC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	3 cut(s)	44, 425, 596
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	273
SphI	GCATGC	1 cut(s)	17
SspMI	CTAG	4 cut(s)	147, 176, 653, 672
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	69, 117, 225
TaqI	TCGA	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	186, 231
Tru9I	TTAA	2 cut(s)	186, 231
TscAI	CASTG	2 cut(s)	84, 228
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	356, 675
TspRI	CASTG	2 cut(s)	84, 228
VpaK11BI	GGWCC	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	2 cut(s)	17, 49
XspI	CTAG	4 cut(s)	147, 176, 653, 672
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.