Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018072

Physical Location & Seq

Genomic Coordinates Forward (+)

43745980 .. 43747451

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTTTTATGCATGCTGTGTTTTCTTCACTTGCAACCGATTATCTGTTTCACCCTCCGGAAAAACCTTTCTACACACTGGAGGAGGAGGAAGGGAGCAAGAAGCTAAAGCTGGAGTTGAGCGCTGTCACGTACACAAAGTTTCCTTGGTACAAACCGGAGTTGAAGCCAGGGATGGACGTTGTCAAGATCAGGACCGTGAGAGGGAATGATATCGTGGCAGTGTATGTTAAGAACCCCTCGGCTTCCTTGACTGTTCTATACTCGCATGGAAATGCAGTAGATTTGGGTAATCTAATGAGGCTCAGGGGCTTGACTGAGCTCAGCGATCACCTCGGAGTCAATGTATTGGGGTACGATTACTCTGGTTACGGCCAGTCCACCGGGAAGCCAAGTGAGGAAAACACTTATGCAGACATAGAAGCTGCGTATAGATACCTTGTGGACAAGTACGGTGCAAAGGAGGAAGATGTCATCTTATATGGGAGTTCCATTGGAGCTGGACCTACAATAGACCTTGCAACCCAGTTGCCGAGATTGAGGGGTGTGGCTCTTCAAAGTCCTATCACATCTGCCCTTCGGTTGGTATCGTTTGCACTTTGTGCCGCAGGATTGGAGCGACGATCATATTCGTTTGACATTTATAAGAACCTTGAGAAAATACCTTTAGTTAGTTGTCCTGTACTGGTGATTCATGGGACGGCTGATGAACTGGTGCACTGGTGGCATGGCCAGCAGCTTTGGTATCATTCGAAGTACCAGTATGAACCACTGTGGATACAAGGAGGGAAACATAATGACTTGAATAAGTACCCACGATTCAGAAAGCATTTAAAGAAGTTTGTATCGGACATGGAGATAGAATTTCCATATAGAAGAGCTAGACAGAGCATAGATCACGATGAGAGGTCGAGGGCCATTTCTGAAGAGGAGGTGAGATCAATAAAGAGTTTTGATGTGGATAAGTCGGAGGAACAAGCAAGTAATGTCAGTGGAAAGATTTTCAGATCAGTTGGGTTGTTAAATTGTTTTAAGCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

347

Amino Acids

39.39

Weight (kDa)

7.18

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF818	PF05677	81 - 167	1.1e-06	Chlamydia CHLPS protein (DUF818)
Hydrolase_4	PF12146	110 - 191	6.2e-07	Serine aminopeptidase, S33
Peptidase_S9	PF00326	133 - 247	4.7e-07	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018072)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12140
rosa_chinensis	RchiOBHm_Chr1g0350901
rosa_laevigata	RLG00000028445
rosa_multiflora	Rmu_sc0014584.1_g000011
rosa_roxburghii	Rroxscaffold_4G00304430
rosa_rugosa	Rorug01G0215100
rosa_samantha	Rh1AG229400 Rh1BG199400 Rh1CG214200 Rh1DG227300
rosa_wichuraiana	Rw1G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	1 cut(s)	606
AcoI	YGGCCR	2 cut(s)	373, 730
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	1 cut(s)	945
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	7 cut(s)	134, 152, 356, 452, 684, 758, 812
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	204, 583
AgsI	TTSAA	3 cut(s)	166, 557, 805
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	7 cut(s)	106, 112, 322, 425, 500, 739, 881
AluI	AGCT	7 cut(s)	106, 112, 322, 425, 500, 739, 881
Alw21I	GWGCWC	2 cut(s)	324, 720
Alw44I	GTGCAC	1 cut(s)	716
Aor13HI	TCCGGA	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	3 cut(s)	373, 730, 915
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	425, 736
ApoI	RAATTY	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	195, 503, 915
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	4 cut(s)	44, 323, 700, 946
AsuII	TTCGAA	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	195, 503
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	324, 720
BbvI	GCAGC	2 cut(s)	412, 748
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	2 cut(s)	388, 717
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	1 cut(s)	882
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	771
BisI	GCNGC	3 cut(s)	426, 606, 737
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	3 cut(s)	427, 607, 738
Bme1390I	CCNGG	2 cut(s)	171, 385
Bme18I	GGWCC	2 cut(s)	195, 503
BmgT120I	GGNCC	3 cut(s)	195, 503, 915
BmrFI	CCNGG	2 cut(s)	171, 385
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
BpmI	CTGGAG	2 cut(s)	101, 134
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	146, 170, 240, 334
BsaWI	WCCGGW	2 cut(s)	58, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 583
Bse118I	RCCGGY	1 cut(s)	1036
Bse1I	ACTGG	7 cut(s)	84, 376, 526, 690, 717, 725, 760
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	146, 170, 240, 334
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	204, 583
BseMII	CTCAG	3 cut(s)	309, 319, 337
BseNI	ACTGG	7 cut(s)	84, 376, 526, 690, 717, 725, 760
BseRI	GAGGAG	3 cut(s)	98, 101, 944
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	412, 748
BshFI	GGCC	3 cut(s)	375, 732, 917
BsiHKAI	GWGCWC	2 cut(s)	324, 720
BsiSI	CCGG	4 cut(s)	59, 158, 384, 1037
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	204, 583
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	375, 732, 917
Bsp119I	TTCGAA	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	324, 720
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	3 cut(s)	375, 732, 917
BspCNI	CTCAG	3 cut(s)	310, 318, 336
BspEI	TCCGGA	1 cut(s)	58
BspQI	GCTCTTC	2 cut(s)	558, 871
BspT104I	TTCGAA	1 cut(s)	752
BsrFI	RCCGGY	1 cut(s)	1036
BsrI	ACTGG	7 cut(s)	84, 376, 526, 690, 717, 725, 760
BssAI	RCCGGY	1 cut(s)	1036
BssECI	CCNNGG	4 cut(s)	146, 170, 240, 334
BssMI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	199, 256, 455, 774
Bst6I	CTCTTC	3 cut(s)	558, 871, 921
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBAI	YACGTR	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	15, 734, 1038
BstDEI	CTNAG	3 cut(s)	305, 318, 323
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	192, 331, 626, 898, 941, 1010
BstMBI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
BstMWI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	169, 383
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	412, 748
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	375, 732, 917
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	5 cut(s)	77, 228, 718, 770, 997
Cac8I	GCNNGC	3 cut(s)	15, 734, 1038
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	1036
Cfr13I	GGNCC	3 cut(s)	195, 503, 915
Csp6I	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
CviAII	CATG	5 cut(s)	14, 269, 695, 728, 853
CviQI	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
DdeI	CTNAG	3 cut(s)	305, 318, 323
DpnI	GATC	6 cut(s)	191, 330, 625, 897, 940, 1009
DpnII	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
DraI	TTTAAA	1 cut(s)	834
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	2 cut(s)	373, 730
Eam1104I	CTCTTC	3 cut(s)	558, 871, 921
EarI	CTCTTC	3 cut(s)	558, 871, 921
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	195, 503
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	17, 272, 698, 731, 856
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	5 cut(s)	13, 268, 694, 727, 852
Fnu4HI	GCNGC	3 cut(s)	426, 606, 737
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	426, 606, 737
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	426, 606, 737
GsuI	CTGGAG	2 cut(s)	101, 134
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	375, 732, 917
HapII	CCGG	4 cut(s)	59, 158, 384, 1037
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	17, 272, 698, 731, 856
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	339, 691, 819
HpaII	CCGG	4 cut(s)	59, 158, 384, 1037
HphI	GGTGA	4 cut(s)	44, 323, 700, 946
Hpy166II	GTNNAC	4 cut(s)	135, 381, 445, 718
Hpy188I	TCNGA	6 cut(s)	338, 824, 850, 925, 970, 1007
Hpy188III	TCNNGA	4 cut(s)	59, 187, 193, 899
Hpy8I	GTNNAC	4 cut(s)	135, 381, 445, 718
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	2 cut(s)	86, 587
HpyCH4III	ACNGT	4 cut(s)	199, 256, 455, 774
HpyCH4IV	ACGT	2 cut(s)	131, 180
HpyCH4V	TGCA	8 cut(s)	13, 35, 278, 413, 458, 521, 596, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
HpyF3I	CTNAG	3 cut(s)	305, 318, 323
HpySE526I	ACGT	2 cut(s)	131, 180
Hsp92II	CATG	5 cut(s)	17, 272, 698, 731, 856
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	1036
KroNI	GCCGGC	1 cut(s)	1038
Kzo9I	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
LguI	GCTCTTC	2 cut(s)	558, 871
LmnI	GCTCC	3 cut(s)	96, 497, 616
Lsp1109I	GCAGC	2 cut(s)	412, 748
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	2 cut(s)	131, 180
MaeIII	GTNAC	2 cut(s)	127, 368
MalI	GATC	6 cut(s)	191, 330, 625, 897, 940, 1009
MboI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
MboII	GAAGA	5 cut(s)	18, 479, 545, 888, 938
MhlI	GDGCHC	2 cut(s)	324, 720
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	2 cut(s)	863, 1024
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	948
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	1036
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	4 cut(s)	231, 833, 1022, 1032
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	4 cut(s)	59, 158, 384, 1037
MspR9I	CCNGG	2 cut(s)	171, 385
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
NaeI	GCCGGC	1 cut(s)	1038
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
NgoMIV	GCCGGC	1 cut(s)	1036
NlaIII	CATG	5 cut(s)	17, 272, 698, 731, 856
NmeAIII	GCCGAG	2 cut(s)	221, 558
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	17
PciSI	GCTCTTC	2 cut(s)	558, 871
PdiI	GCCGGC	1 cut(s)	1038
PfeI	GAWTC	2 cut(s)	691, 819
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	427, 607, 738
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	195, 503, 915
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	7 cut(s)	134, 152, 356, 452, 684, 758, 812
RsaNI	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	2 cut(s)	558, 871
SaqAI	TTAA	4 cut(s)	231, 833, 1022, 1032
SatI	GCNGC	3 cut(s)	426, 606, 737
Sau3AI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
Sau96I	GGNCC	3 cut(s)	195, 503, 915
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	171, 385
SduI	GDGCHC	2 cut(s)	324, 720
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	2 cut(s)	195, 503
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	863, 1024
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	169, 383
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	4 cut(s)	199, 256, 455, 774
TaiI	ACGT	2 cut(s)	134, 183
TaqI	TCGA	2 cut(s)	752, 911
TasI	AATT	2 cut(s)	863, 1024
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	691, 819
Tru1I	TTAA	4 cut(s)	231, 833, 1022, 1032
Tru9I	TTAA	4 cut(s)	231, 833, 1022, 1032
TscAI	CASTG	5 cut(s)	84, 228, 725, 777, 997
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	425, 736
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	683, 723, 780
TspRI	CASTG	5 cut(s)	84, 228, 725, 777, 997
Tth111I	GACNNNGTC	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	2 cut(s)	195, 503
XapI	RAATTY	1 cut(s)	863
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	882
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.