Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018072

Physical Location & Seq

Genomic Coordinates Reverse (-)

25089182 .. 25090228

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTTTTATGCATGCTGTGTTTTCTTCACTTGCAACCGATTATCTGTTTCACCCTCCGGAAAAACCTTTCTACACACTGGAGGAGGAGGAAGGGAGCAAGAAGCTAAAGCTGGAGTTGAGCGCTGTCACGTACACAAAGTTTCCTTGGTACAAACCGGATCAGTTGAAGCCAGGGATGGACGTTGTCAAGATCAGGACCGAGAGAGGGAATGATATCGTGGCAGTGTATGTTAAGAACCCCTCGGCTTCCTTGACTGTTCTATACTCGCATGGAAATGCAGTAGATTTGGGTAATCTAATGTGGCTCAGGGGCTTGACTGAGCTCAGCGATCACCTCGGAGTCAATGTATTGGGCTACGATTACTCTGGTTACGGCCAGTCCACCGGGAAGCCAAGTGAGGAAAACACTTATGCAGACATAGAAGCTGCGTATAGATGCCTTGTGGACAAGTACGGTGCAAAGGAGGAAGATGTCATCTTATATGGGAGTTCCATTGGAGCTGGACCTACAATAGACCTTGCAACCCGGTTGCCGAGATTGAGGGGTGTGGTTCTTCAAAGTCCTATCACATCTGCCCTTCGGTTCGTATCGTTTGCACTTTGTGCCGCAGGATTGGAGCGACGATCATATTCGTTTGACATTTATAAGAACCTTGAGAAAATACCTTTAGTTAGTTGTCCTGTACTGGTGATTCATGGGACGGCTGATGAACTGGTGCACTGGTGGCATGGCCAGCAGCTTTGGTATCATTCGAAGTACCAGTATGAACCACTGTGGATACAAGGAGGGAAACATAATGACTTGAATAAGTACCCACGATTCAGAAAGCATTTAAAGAAGTTTGTATCGGACATGGAGATAGAATTTCCATATAGAAGAGCTAGCCAGAGCATAGATCACGACGAGAGGTCGAGGGCCATTTCTGAAGAGGAGGTGAGATCAATAAAGAGTTTTGATGTGGACAAGTCGGAGGAACAAGCAAGTAATGTCAGTGGAAAGATTTTCAGATCAGTTGGGTTGTTAAATTGTTTTAAGCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

348

Amino Acids

39.52

Weight (kDa)

6.61

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	91 - 192	1e-06	Alpha/beta hydrolase family
Hydrolase_4	PF12146	112 - 192	9.1e-08	Serine aminopeptidase, S33
Peptidase_S9	PF00326	134 - 248	8e-07	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018072)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12140
rosa_chinensis	RchiOBHm_Chr1g0350901
rosa_laevigata	RLG00000028445
rosa_multiflora	Rmu_sc0014584.1_g000011
rosa_roxburghii	Rroxscaffold_4G00304430
rosa_rugosa	Rorug01G0215100
rosa_samantha	Rh1AG229400 Rh1BG199400 Rh1CG214200 Rh1DG227300
rosa_wichuraiana	Rw1G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	376, 733
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	948
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	6 cut(s)	134, 152, 455, 687, 761, 815
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	169, 560, 808
AhdI	GACNNNNNGTC	1 cut(s)	910
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	7 cut(s)	106, 112, 325, 428, 503, 742, 884
AluI	AGCT	7 cut(s)	106, 112, 325, 428, 503, 742, 884
Alw21I	GWGCWC	2 cut(s)	327, 723
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	3 cut(s)	376, 733, 918
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	428, 739
ApoI	RAATTY	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	198, 506, 918
AsuC2I	CCSGG	2 cut(s)	388, 529
AsuHPI	GGTGA	4 cut(s)	44, 326, 703, 949
AsuII	TTCGAA	1 cut(s)	755
AsuNHI	GCTAGC	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	198, 506
BaeGI	GKGCMC	1 cut(s)	723
BalI	TGGCCA	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	327, 723
BbvI	GCAGC	2 cut(s)	415, 751
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	391, 720
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	774
BcnI	CCSGG	2 cut(s)	388, 529
BfaI	CTAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	429, 609, 740
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	3 cut(s)	430, 610, 741
Bme1390I	CCNGG	3 cut(s)	174, 388, 529
Bme18I	GGWCC	2 cut(s)	198, 506
BmeRI	GACNNNNNGTC	1 cut(s)	910
BmgT120I	GGNCC	3 cut(s)	198, 506, 918
BmrFI	CCNGG	3 cut(s)	174, 388, 529
BmsI	GCATC	1 cut(s)	428
BmtI	GCTAGC	1 cut(s)	888
BpmI	CTGGAG	2 cut(s)	101, 134
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	2 cut(s)	388, 529
BsaAI	YACGTR	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	146, 173, 243, 337
BsaWI	WCCGGW	2 cut(s)	58, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	1039
Bse1I	ACTGG	6 cut(s)	84, 379, 693, 720, 728, 763
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	4 cut(s)	146, 173, 243, 337
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	312, 322, 340
BseNI	ACTGG	6 cut(s)	84, 379, 693, 720, 728, 763
BseRI	GAGGAG	3 cut(s)	98, 101, 947
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	415, 751
BshFI	GGCC	3 cut(s)	378, 735, 920
BsiHKAI	GWGCWC	2 cut(s)	327, 723
BsiSI	CCGG	5 cut(s)	59, 158, 387, 529, 1040
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	3 cut(s)	378, 735, 920
Bsp119I	TTCGAA	1 cut(s)	755
Bsp1286I	GDGCHC	2 cut(s)	327, 723
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	609
BspANI	GGCC	3 cut(s)	378, 735, 920
BspCNI	CTCAG	3 cut(s)	313, 321, 339
BspEI	TCCGGA	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	874
BspT104I	TTCGAA	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	1039
BsrI	ACTGG	6 cut(s)	84, 379, 693, 720, 728, 763
BssAI	RCCGGY	1 cut(s)	1039
BssECI	CCNNGG	4 cut(s)	146, 173, 243, 337
BssMI	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	259, 458, 777
Bst6I	CTCTTC	2 cut(s)	874, 924
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstBAI	YACGTR	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	755
BstC8I	GCNNGC	4 cut(s)	15, 737, 886, 1041
BstDEI	CTNAG	3 cut(s)	308, 321, 326
BstF5I	GGATG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	7 cut(s)	163, 195, 334, 629, 901, 944, 1013
BstMBI	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 727, 736
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	172, 386, 527
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	415, 751
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	378, 735, 920
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	5 cut(s)	77, 231, 721, 773, 1000
Cac8I	GCNNGC	4 cut(s)	15, 737, 886, 1041
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	1039
Cfr13I	GGNCC	3 cut(s)	198, 506, 918
Csp6I	GTAC	6 cut(s)	133, 151, 454, 686, 760, 814
CviAII	CATG	5 cut(s)	14, 272, 698, 731, 856
CviQI	GTAC	6 cut(s)	133, 151, 454, 686, 760, 814
DdeI	CTNAG	3 cut(s)	308, 321, 326
DpnI	GATC	7 cut(s)	162, 194, 333, 628, 900, 943, 1012
DpnII	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
DraI	TTTAAA	1 cut(s)	837
DraIII	CACNNNGTG	1 cut(s)	605
DriI	GACNNNNNGTC	1 cut(s)	910
EaeI	YGGCCR	2 cut(s)	376, 733
Eam1104I	CTCTTC	2 cut(s)	874, 924
Eam1105I	GACNNNNNGTC	1 cut(s)	910
EarI	CTCTTC	2 cut(s)	874, 924
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	198, 506
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	948
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	17, 275, 701, 734, 859
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	5 cut(s)	13, 271, 697, 730, 855
Fnu4HI	GCNGC	3 cut(s)	429, 609, 740
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	429, 609, 740
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	429, 609, 740
GsuI	CTGGAG	2 cut(s)	101, 134
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	378, 735, 920
HapII	CCGG	5 cut(s)	59, 158, 387, 529, 1040
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	17, 275, 701, 734, 859
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	342, 694, 822
HpaII	CCGG	5 cut(s)	59, 158, 387, 529, 1040
HphI	GGTGA	4 cut(s)	44, 326, 703, 949
Hpy166II	GTNNAC	5 cut(s)	135, 384, 448, 721, 964
Hpy188I	TCNGA	6 cut(s)	341, 827, 853, 928, 973, 1010
Hpy188III	TCNNGA	4 cut(s)	59, 190, 196, 902
Hpy8I	GTNNAC	5 cut(s)	135, 384, 448, 721, 964
Hpy99I	CGWCG	2 cut(s)	627, 908
HpyAV	CCTTC	2 cut(s)	86, 590
HpyCH4III	ACNGT	3 cut(s)	259, 458, 777
HpyCH4IV	ACGT	2 cut(s)	131, 183
HpyCH4V	TGCA	8 cut(s)	13, 35, 281, 416, 461, 524, 599, 721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 727, 736
HpyF3I	CTNAG	3 cut(s)	308, 321, 326
HpySE526I	ACGT	2 cut(s)	131, 183
Hsp92II	CATG	5 cut(s)	17, 275, 701, 734, 859
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	1039
KroNI	GCCGGC	1 cut(s)	1041
Kzo9I	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
LguI	GCTCTTC	1 cut(s)	874
LmnI	GCTCC	3 cut(s)	96, 500, 619
Lsp1109I	GCAGC	2 cut(s)	415, 751
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	885
MaeII	ACGT	2 cut(s)	131, 183
MaeIII	GTNAC	2 cut(s)	127, 371
MalI	GATC	7 cut(s)	162, 194, 333, 628, 900, 943, 1012
MboI	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
MboII	GAAGA	5 cut(s)	18, 482, 548, 891, 941
MhlI	GDGCHC	2 cut(s)	327, 723
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	2 cut(s)	866, 1027
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	951
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	4 cut(s)	234, 836, 1025, 1035
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	5 cut(s)	59, 158, 387, 529, 1040
MspR9I	CCNGG	3 cut(s)	174, 388, 529
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	605, 727, 736
NaeI	GCCGGC	1 cut(s)	1041
NciI	CCSGG	2 cut(s)	388, 529
NdeII	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
NgoMIV	GCCGGC	1 cut(s)	1039
NheI	GCTAGC	1 cut(s)	884
NlaIII	CATG	5 cut(s)	17, 275, 701, 734, 859
NmeAIII	GCCGAG	2 cut(s)	224, 561
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	874
PdiI	GCCGGC	1 cut(s)	1041
PfeI	GAWTC	2 cut(s)	694, 822
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	430, 610, 741
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspPI	GGNCC	3 cut(s)	198, 506, 918
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	6 cut(s)	134, 152, 455, 687, 761, 815
RsaNI	GTAC	6 cut(s)	133, 151, 454, 686, 760, 814
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	874
SaqAI	TTAA	4 cut(s)	234, 836, 1025, 1035
SatI	GCNGC	3 cut(s)	429, 609, 740
Sau3AI	GATC	7 cut(s)	160, 192, 331, 626, 898, 941, 1010
Sau96I	GGNCC	3 cut(s)	198, 506, 918
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	174, 388, 529
SduI	GDGCHC	2 cut(s)	327, 723
SfaNI	GCATC	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	755
SinI	GGWCC	2 cut(s)	198, 506
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	866, 1027
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	1 cut(s)	885
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	172, 386, 527
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	259, 458, 777
TaiI	ACGT	2 cut(s)	134, 186
TaqI	TCGA	2 cut(s)	755, 914
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	866, 1027
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	2 cut(s)	694, 822
Tru1I	TTAA	4 cut(s)	234, 836, 1025, 1035
Tru9I	TTAA	4 cut(s)	234, 836, 1025, 1035
TscAI	CASTG	5 cut(s)	84, 231, 728, 780, 1000
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	428, 739
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	686, 726, 783
TspRI	CASTG	5 cut(s)	84, 231, 728, 780, 1000
Tth111I	GACNNNGTC	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	198, 506
XapI	RAATTY	1 cut(s)	866
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.