Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018072

Physical Location & Seq

Genomic Coordinates Forward (+)

46067850 .. 46069074

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTTTTATGCATGCTGTGTTTTCTTCACTTGCAACCGATTATCTGTTTCACCCTCCGGAAAAACCTTTCTACACACTGGAGGAGGAGGAAGGGAGCAAGAAGCTAAAGCTGGAGTTGAGCGCTGTCGCGTACACAAAGTTTCCTTGGTACAAACCGGAGTTGAAGCCAGGGATGGACGTTGTCAAGATCAGGACCGAGAGAGGGAATGATATCGTGGCAGTGTATGTTAAGAACCCCTCGGCTTCCTTGACTGTTCTATACTCGCATGGAAATGCAGTAGATTTGGGTAATCTAATGAGGCTCAGGGGCTTGACTGAGCTCAGCGATCACCTCGGAGTCAATGTATTGGGGTACGATTACTCTGGTTACGGCCAGTCCACCGGGAAGCCAAGTGAGGAAAACACTTATGCAGACATAGAAGCTGCGTATAGATACCTTGTGGACAAGTACGGTGCAAAGGAGGAAGATGTCATCTTATATGGGAGTTCCATTGGAGCTGGACCTACAATAGACCTTGCAACCCGGTTGCCGAGATTGAGGGGTGTGGTTCTTCAAAGTCCTATCACATCTGCCCTTCGGTTAGTATCGTTTGCACTTTGTGCCGCAGGATTGGAGCGACGATCATATTCGTTTGACATTTATAAGAACCTTGAGAAAATACCTTTAGTTAGTTGTCCTGTACTGGTGATTCATGGGACGGCTGATGAACTGGTGCACTGGTGGCATGGCCAGCAGCTTTGGTATCATTCGAAGTACCAGTATGAACCACTGTGGATACAAGGAGGGAAACATAATGACTTGAATAAGTACCCACGATTCAGAAAGCATTTAAAGAAGTTTGTATCGGACATGGAGATAGAATTTCCATATAGAAGAGCTAGCCAGAGCATAGATCACGACGAGAGGTCGAGGGCCATTTCTGAAGAGGAGGTGAGATCAATAAAGAGTTTTGATGTGGATAAGTCGGAGGAACAAGCAAGTAATGTCAGTGGAAAGATTTTCAGATCAGTTGGGTTGTTAAATTGTTTTAAGCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

347

Amino Acids

39.37

Weight (kDa)

6.84

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF818	PF05677	80 - 167	1e-06	Chlamydia CHLPS protein (DUF818)
Abhydrolase_6	PF12697	107 - 191	8.2e-06	Alpha/beta hydrolase family
Hydrolase_4	PF12146	110 - 191	7.9e-08	Serine aminopeptidase, S33
Peptidase_S9	PF00326	133 - 247	2.8e-07	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018072)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12140
rosa_chinensis	RchiOBHm_Chr1g0350901
rosa_laevigata	RLG00000028445
rosa_multiflora	Rmu_sc0014584.1_g000011
rosa_roxburghii	Rroxscaffold_4G00304430
rosa_rugosa	Rorug01G0215100
rosa_samantha	Rh1AG229400 Rh1BG199400 Rh1CG214200 Rh1DG227300
rosa_wichuraiana	Rw1G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	1 cut(s)	606
AcoI	YGGCCR	2 cut(s)	373, 730
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	1 cut(s)	945
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	7 cut(s)	134, 152, 356, 452, 684, 758, 812
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	166, 557, 805
AhdI	GACNNNNNGTC	1 cut(s)	907
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	7 cut(s)	106, 112, 322, 425, 500, 739, 881
AluI	AGCT	7 cut(s)	106, 112, 322, 425, 500, 739, 881
Alw21I	GWGCWC	2 cut(s)	324, 720
Alw44I	GTGCAC	1 cut(s)	716
Aor13HI	TCCGGA	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	3 cut(s)	373, 730, 915
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	425, 736
ApoI	RAATTY	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	195, 503, 915
AsuC2I	CCSGG	2 cut(s)	385, 526
AsuHPI	GGTGA	4 cut(s)	44, 323, 700, 946
AsuII	TTCGAA	1 cut(s)	752
AsuNHI	GCTAGC	1 cut(s)	881
AvaII	GGWCC	2 cut(s)	195, 503
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	324, 720
BbvI	GCAGC	2 cut(s)	412, 748
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	2 cut(s)	388, 717
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	771
BcnI	CCSGG	2 cut(s)	385, 526
BfaI	CTAG	1 cut(s)	882
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	771
BisI	GCNGC	3 cut(s)	426, 606, 737
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	3 cut(s)	427, 607, 738
Bme1390I	CCNGG	3 cut(s)	171, 385, 526
Bme18I	GGWCC	2 cut(s)	195, 503
BmeRI	GACNNNNNGTC	1 cut(s)	907
BmgT120I	GGNCC	3 cut(s)	195, 503, 915
BmrFI	CCNGG	3 cut(s)	171, 385, 526
BmtI	GCTAGC	1 cut(s)	885
BpmI	CTGGAG	2 cut(s)	101, 134
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	2 cut(s)	385, 526
BsaJI	CCNNGG	4 cut(s)	146, 170, 240, 334
BsaWI	WCCGGW	2 cut(s)	58, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	1036
Bse1I	ACTGG	6 cut(s)	84, 376, 690, 717, 725, 760
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	146, 170, 240, 334
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	309, 319, 337
BseNI	ACTGG	6 cut(s)	84, 376, 690, 717, 725, 760
BseRI	GAGGAG	3 cut(s)	98, 101, 944
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	412, 748
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	375, 732, 917
BsiHKAI	GWGCWC	2 cut(s)	324, 720
BsiSI	CCGG	5 cut(s)	59, 158, 384, 526, 1037
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	375, 732, 917
Bsp119I	TTCGAA	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	324, 720
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	3 cut(s)	375, 732, 917
BspCNI	CTCAG	3 cut(s)	310, 318, 336
BspEI	TCCGGA	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	885
BspQI	GCTCTTC	1 cut(s)	871
BspT104I	TTCGAA	1 cut(s)	752
BsrFI	RCCGGY	1 cut(s)	1036
BsrI	ACTGG	6 cut(s)	84, 376, 690, 717, 725, 760
BssAI	RCCGGY	1 cut(s)	1036
BssECI	CCNNGG	4 cut(s)	146, 170, 240, 334
BssMI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	256, 455, 774
Bst6I	CTCTTC	2 cut(s)	871, 921
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	15, 734, 883, 1038
BstDEI	CTNAG	3 cut(s)	305, 318, 323
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	192, 331, 626, 898, 941, 1010
BstMBI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
BstMWI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	169, 383, 524
BstSLI	GKGCMC	1 cut(s)	720
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	412, 748
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	375, 732, 917
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	5 cut(s)	77, 228, 718, 770, 997
Cac8I	GCNNGC	4 cut(s)	15, 734, 883, 1038
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	1036
Cfr13I	GGNCC	3 cut(s)	195, 503, 915
Csp6I	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
CviAII	CATG	5 cut(s)	14, 269, 695, 728, 853
CviQI	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
DdeI	CTNAG	3 cut(s)	305, 318, 323
DpnI	GATC	6 cut(s)	191, 330, 625, 897, 940, 1009
DpnII	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
DraI	TTTAAA	1 cut(s)	834
DraIII	CACNNNGTG	1 cut(s)	602
DriI	GACNNNNNGTC	1 cut(s)	907
EaeI	YGGCCR	2 cut(s)	373, 730
Eam1104I	CTCTTC	2 cut(s)	871, 921
Eam1105I	GACNNNNNGTC	1 cut(s)	907
EarI	CTCTTC	2 cut(s)	871, 921
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	195, 503
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	17, 272, 698, 731, 856
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	5 cut(s)	13, 268, 694, 727, 852
Fnu4HI	GCNGC	3 cut(s)	426, 606, 737
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	426, 606, 737
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	426, 606, 737
GsuI	CTGGAG	2 cut(s)	101, 134
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	375, 732, 917
HapII	CCGG	5 cut(s)	59, 158, 384, 526, 1037
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	17, 272, 698, 731, 856
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	339, 691, 819
HpaII	CCGG	5 cut(s)	59, 158, 384, 526, 1037
HphI	GGTGA	4 cut(s)	44, 323, 700, 946
Hpy166II	GTNNAC	4 cut(s)	135, 381, 445, 718
Hpy188I	TCNGA	6 cut(s)	338, 824, 850, 925, 970, 1007
Hpy188III	TCNNGA	4 cut(s)	59, 187, 193, 899
Hpy8I	GTNNAC	4 cut(s)	135, 381, 445, 718
Hpy99I	CGWCG	2 cut(s)	624, 905
HpyAV	CCTTC	2 cut(s)	86, 587
HpyCH4III	ACNGT	3 cut(s)	256, 455, 774
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	8 cut(s)	13, 35, 278, 413, 458, 521, 596, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
HpyF3I	CTNAG	3 cut(s)	305, 318, 323
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	17, 272, 698, 731, 856
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	1036
KroNI	GCCGGC	1 cut(s)	1038
Kzo9I	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
LguI	GCTCTTC	1 cut(s)	871
LmnI	GCTCC	3 cut(s)	96, 497, 616
Lsp1109I	GCAGC	2 cut(s)	412, 748
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	6 cut(s)	191, 330, 625, 897, 940, 1009
MboI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
MboII	GAAGA	5 cut(s)	18, 479, 545, 888, 938
MhlI	GDGCHC	2 cut(s)	324, 720
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	2 cut(s)	863, 1024
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	948
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	1036
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	4 cut(s)	231, 833, 1022, 1032
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	5 cut(s)	59, 158, 384, 526, 1037
MspR9I	CCNGG	3 cut(s)	171, 385, 526
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	602, 724, 733
NaeI	GCCGGC	1 cut(s)	1038
NciI	CCSGG	2 cut(s)	385, 526
NdeII	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
NgoMIV	GCCGGC	1 cut(s)	1036
NheI	GCTAGC	1 cut(s)	881
NlaIII	CATG	5 cut(s)	17, 272, 698, 731, 856
NmeAIII	GCCGAG	2 cut(s)	221, 558
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	871
PdiI	GCCGGC	1 cut(s)	1038
PfeI	GAWTC	2 cut(s)	691, 819
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	427, 607, 738
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	195, 503, 915
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	7 cut(s)	134, 152, 356, 452, 684, 758, 812
RsaNI	GTAC	7 cut(s)	133, 151, 355, 451, 683, 757, 811
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	871
SaqAI	TTAA	4 cut(s)	231, 833, 1022, 1032
SatI	GCNGC	3 cut(s)	426, 606, 737
Sau3AI	GATC	6 cut(s)	189, 328, 623, 895, 938, 1007
Sau96I	GGNCC	3 cut(s)	195, 503, 915
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	171, 385, 526
SduI	GDGCHC	2 cut(s)	324, 720
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	2 cut(s)	195, 503
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	863, 1024
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	169, 383, 524
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	256, 455, 774
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	752, 911
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	863, 1024
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	691, 819
Tru1I	TTAA	4 cut(s)	231, 833, 1022, 1032
Tru9I	TTAA	4 cut(s)	231, 833, 1022, 1032
TscAI	CASTG	5 cut(s)	84, 228, 725, 777, 997
TseI	GCWGC	2 cut(s)	425, 736
TspDTI	ATGAA	3 cut(s)	683, 723, 780
TspRI	CASTG	5 cut(s)	84, 228, 725, 777, 997
Tth111I	GACNNNGTC	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	2 cut(s)	195, 503
XapI	RAATTY	1 cut(s)	863
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	882
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.