Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018072

Physical Location & Seq

Genomic Coordinates Forward (+)

43140095 .. 43141129

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCATGCTGTGTTTTCTTCACTTGCAACCGATTATCTGTTTCACCCTCCGGAAAAACCTTTCTACACACTGGAGGAGGAGGAAGGAAGCAAGAAGCTAAAGCTGGAGTTGAGCGCTGTCGCGTACACAAAGTTTCCTTGGTACAAACCGGAGTTGAAGCCAGGGATGGACGTTGTCAAGATCAGGACCGAGAGAGGGAATGATATCGTGGCAGTGTATGTTAAGAACCCCTCGGCTTCCTTGACTGTTCTATACTCGCATGGAAATGCAGTAGATTTGGGTAATCTAATGAGGCTCAGGGGCTTGACTGAGCTCAGCGATCACCTCGGAGTCAATGTATTGGGGTACGATTACTCTGGTTACGGCCAGTCCACCGGGAAGCCAAGTGAGGAAAACACTTATGCAGACATAGAAGCTGCGTATAGATTCCTTGTGGACAAGTACGGTGCAAAGGAGGAAGATGTCATCTTATATGGGAGTTCCATTGGAGCTGGACCTACAATAGACCTTGCAGCCCGGTTGCCGAGATTGAGGGGTGTGGTTCTTCAAAGTCCTATCACATCTGCCCTTCGGTTAGTATCGTTTGCACTTTGTGCCGCAGGATTGGAGCGACGATCATATTCGTTTGACATTTATAAGAACCTTGAGAAAATACCTTTAGTTAGTTGTCCTGTACTGGTGATTCATGGGACGGCTGATGAACTGGTGCACTGGTGGCATGGCCAGCAGCTTTGGTATCATTCGAAGTACCAGTATGAACCACTGTGGATACAAGGAGGGAAACATAATGACTTGAATAAGTACCCACGATTCAGAAAGCATTTGAAGAAGTTTGTATCGGACATGGAGATAGAATTTCCATATAGAAGAGCTAGCCAGAGCATAGATCACGACGAGAGGTCGAGGGCCATTTCTGAAGAGGAGGTGAGATCAATAAAGAGTTTTGATGTGGATAAGTCGGAGGAACAAGCAAGTAATGTCAGTGGAAAGATTTTCAGATCAGTTGGGTTGTTAAATTGTTTTAAGCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

344

Amino Acids

38.99

Weight (kDa)

6.84

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF818	PF05677	77 - 164	6.4e-06	Chlamydia CHLPS protein (DUF818)
Hydrolase_4	PF12146	107 - 188	8.1e-08	Serine aminopeptidase, S33
Peptidase_S9	PF00326	130 - 244	1.9e-06	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018072)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12140
rosa_chinensis	RchiOBHm_Chr1g0350901
rosa_laevigata	RLG00000028445
rosa_multiflora	Rmu_sc0014584.1_g000011
rosa_roxburghii	Rroxscaffold_4G00304430
rosa_rugosa	Rorug01G0215100
rosa_samantha	Rh1AG229400 Rh1BG199400 Rh1CG214200 Rh1DG227300
rosa_wichuraiana	Rw1G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	1 cut(s)	597
AcoI	YGGCCR	2 cut(s)	364, 721
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	936
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	7 cut(s)	125, 143, 347, 443, 675, 749, 803
AfeI	AGCGCT	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	157, 548, 796, 826
AhdI	GACNNNNNGTC	1 cut(s)	898
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	7 cut(s)	97, 103, 313, 416, 491, 730, 872
AluI	AGCT	7 cut(s)	97, 103, 313, 416, 491, 730, 872
Alw21I	GWGCWC	2 cut(s)	315, 711
Alw44I	GTGCAC	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	49
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	3 cut(s)	364, 721, 906
ApaLI	GTGCAC	1 cut(s)	707
ApeKI	GCWGC	3 cut(s)	416, 512, 727
ApoI	RAATTY	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	186, 494, 906
AsuC2I	CCSGG	2 cut(s)	376, 517
AsuHPI	GGTGA	4 cut(s)	35, 314, 691, 937
AsuII	TTCGAA	1 cut(s)	743
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	186, 494
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	315, 711
BbvI	GCAGC	3 cut(s)	403, 524, 739
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	379, 708
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	1 cut(s)	762
BcnI	CCSGG	2 cut(s)	376, 517
BfaI	CTAG	1 cut(s)	873
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	762
BisI	GCNGC	4 cut(s)	417, 513, 597, 728
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	418, 514, 598, 729
Bme1390I	CCNGG	3 cut(s)	162, 376, 517
Bme18I	GGWCC	2 cut(s)	186, 494
BmeRI	GACNNNNNGTC	1 cut(s)	898
BmgT120I	GGNCC	3 cut(s)	186, 494, 906
BmrFI	CCNGG	3 cut(s)	162, 376, 517
BmtI	GCTAGC	1 cut(s)	876
BpmI	CTGGAG	2 cut(s)	92, 125
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	376, 517
BsaJI	CCNNGG	4 cut(s)	137, 161, 231, 325
BsaWI	WCCGGW	2 cut(s)	49, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	1027
Bse1I	ACTGG	6 cut(s)	75, 367, 681, 708, 716, 751
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	137, 161, 231, 325
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	300, 310, 328
BseNI	ACTGG	6 cut(s)	75, 367, 681, 708, 716, 751
BseRI	GAGGAG	3 cut(s)	89, 92, 935
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	3 cut(s)	403, 524, 739
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	366, 723, 908
BsiHKAI	GWGCWC	2 cut(s)	315, 711
BsiSI	CCGG	5 cut(s)	50, 149, 375, 517, 1028
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	703
BsnI	GGCC	3 cut(s)	366, 723, 908
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	315, 711
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	3 cut(s)	366, 723, 908
BspCNI	CTCAG	3 cut(s)	301, 309, 327
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	876
BspQI	GCTCTTC	1 cut(s)	862
BspT104I	TTCGAA	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	1027
BsrI	ACTGG	6 cut(s)	75, 367, 681, 708, 716, 751
BssAI	RCCGGY	1 cut(s)	1027
BssECI	CCNNGG	4 cut(s)	137, 161, 231, 325
BssMI	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	247, 446, 765
Bst6I	CTCTTC	2 cut(s)	862, 912
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	4 cut(s)	6, 725, 874, 1029
BstDEI	CTNAG	3 cut(s)	296, 309, 314
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	6 cut(s)	183, 322, 617, 889, 932, 1001
BstMBI	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 715, 724
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	160, 374, 515
BstSLI	GKGCMC	1 cut(s)	711
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	403, 524, 739
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	366, 723, 908
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	5 cut(s)	68, 219, 709, 761, 988
Cac8I	GCNNGC	4 cut(s)	6, 725, 874, 1029
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	1027
Cfr13I	GGNCC	3 cut(s)	186, 494, 906
Csp6I	GTAC	7 cut(s)	124, 142, 346, 442, 674, 748, 802
CviAII	CATG	5 cut(s)	5, 260, 686, 719, 844
CviQI	GTAC	7 cut(s)	124, 142, 346, 442, 674, 748, 802
DdeI	CTNAG	3 cut(s)	296, 309, 314
DpnI	GATC	6 cut(s)	182, 321, 616, 888, 931, 1000
DpnII	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
DraIII	CACNNNGTG	1 cut(s)	593
DriI	GACNNNNNGTC	1 cut(s)	898
EaeI	YGGCCR	2 cut(s)	364, 721
Eam1104I	CTCTTC	2 cut(s)	862, 912
Eam1105I	GACNNNNNGTC	1 cut(s)	898
EarI	CTCTTC	2 cut(s)	862, 912
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	186, 494
Eco47III	AGCGCT	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	936
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	5 cut(s)	8, 263, 689, 722, 847
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	5 cut(s)	4, 259, 685, 718, 843
Fnu4HI	GCNGC	4 cut(s)	417, 513, 597, 728
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	4 cut(s)	417, 513, 597, 728
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	417, 513, 597, 728
GsuI	CTGGAG	2 cut(s)	92, 125
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	366, 723, 908
HapII	CCGG	5 cut(s)	50, 149, 375, 517, 1028
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	8, 263, 689, 722, 847
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	4 cut(s)	330, 426, 682, 810
HpaII	CCGG	5 cut(s)	50, 149, 375, 517, 1028
HphI	GGTGA	4 cut(s)	35, 314, 691, 937
Hpy166II	GTNNAC	4 cut(s)	126, 372, 436, 709
Hpy188I	TCNGA	6 cut(s)	329, 815, 841, 916, 961, 998
Hpy188III	TCNNGA	4 cut(s)	50, 178, 184, 890
Hpy8I	GTNNAC	4 cut(s)	126, 372, 436, 709
Hpy99I	CGWCG	2 cut(s)	615, 896
HpyAV	CCTTC	2 cut(s)	77, 578
HpyCH4III	ACNGT	3 cut(s)	247, 446, 765
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	8 cut(s)	4, 26, 269, 404, 449, 512, 587, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 715, 724
HpyF3I	CTNAG	3 cut(s)	296, 309, 314
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	8, 263, 689, 722, 847
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	1027
KroNI	GCCGGC	1 cut(s)	1029
Kzo9I	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
LguI	GCTCTTC	1 cut(s)	862
LmnI	GCTCC	2 cut(s)	488, 607
Lsp1109I	GCAGC	3 cut(s)	403, 524, 739
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	6 cut(s)	182, 321, 616, 888, 931, 1000
MboI	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
MboII	GAAGA	6 cut(s)	9, 470, 536, 838, 879, 929
MhlI	GDGCHC	2 cut(s)	315, 711
MlsI	TGGCCA	1 cut(s)	723
MluCI	AATT	2 cut(s)	854, 1015
MluNI	TGGCCA	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	939
Mox20I	TGGCCA	1 cut(s)	723
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	49
MroNI	GCCGGC	1 cut(s)	1027
MscI	TGGCCA	1 cut(s)	723
MseI	TTAA	3 cut(s)	222, 1013, 1023
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	723
MspI	CCGG	5 cut(s)	50, 149, 375, 517, 1028
MspR9I	CCNGG	3 cut(s)	162, 376, 517
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	593, 715, 724
NaeI	GCCGGC	1 cut(s)	1029
NciI	CCSGG	2 cut(s)	376, 517
NdeII	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
NgoMIV	GCCGGC	1 cut(s)	1027
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	5 cut(s)	8, 263, 689, 722, 847
NmeAIII	GCCGAG	2 cut(s)	212, 549
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	743
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	862
PdiI	GCCGGC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	426, 682, 810
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	418, 514, 598, 729
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	186, 494, 906
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	7 cut(s)	125, 143, 347, 443, 675, 749, 803
RsaNI	GTAC	7 cut(s)	124, 142, 346, 442, 674, 748, 802
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	222, 1013, 1023
SatI	GCNGC	4 cut(s)	417, 513, 597, 728
Sau3AI	GATC	6 cut(s)	180, 319, 614, 886, 929, 998
Sau96I	GGNCC	3 cut(s)	186, 494, 906
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	162, 376, 517
SduI	GDGCHC	2 cut(s)	315, 711
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	2 cut(s)	186, 494
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	854, 1015
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	160, 374, 515
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	247, 446, 765
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	743, 902
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	854, 1015
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	426, 682, 810
Tru1I	TTAA	3 cut(s)	222, 1013, 1023
Tru9I	TTAA	3 cut(s)	222, 1013, 1023
TscAI	CASTG	5 cut(s)	75, 219, 716, 768, 988
TseI	GCWGC	3 cut(s)	416, 512, 727
TspDTI	ATGAA	3 cut(s)	674, 714, 771
TspRI	CASTG	5 cut(s)	75, 219, 716, 768, 988
Tth111I	GACNNNGTC	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	186, 494
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.