Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018073

Physical Location & Seq

Genomic Coordinates Forward (+)

12023043 .. 12026625

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCAGGCTGCGTGGGAGACTAGAATGGCAATGGACCACACGCCGAGCTTGGGGTACTCTTTCGCCACCGACGAGATTCTCCGCAACCGGCGGCTCATGCGTCGTGCACCGGCGCCGGTACGCGGCACCGGCTGGCTCCTCCGCCGTGTAATGAGGCTGGATGAGGAGGAGCTGCGAGTGGGCCACCACAGCAGCTCGTCTTCGAAGTTGTCTATAGTTCTGGACCTGCTGTGGAACCTGTCGTTTGTGGTGGTCGGTGTCACAATGCTGGCGCTGAGCACGGCGGAGAAGCCGCCGGTGCCGTTGAGGTTTTGGGCGAGTGGGTATGTGGTGCTTAGTGCTGTTCATATTGGGTGTGTGATTGTAAGCAAGAGAGGGGAGTTGGGTTTTGGCTCAGAGGATTGGGGTTCTGGGAGTGAAGGTGATAATGATGAGAGTGAGCTGGCCCTGATTGAGGAGCATAGAAGAGGTGTTGCAAAGACTGTGAGTACGGCCAATTCCATGGCTTCAGTGGTTTGGTGGCTCGCTGGATTCTACTGGGTGGTTGCTGGCGGAGCTTTAAGCGATGCTCCTCGTCTATTCGGGCTTTGTGTTGCATTTCTACTGTGCGATATCATGACCATCATTTTATGTATTGCTGCCACATGTCTTTATTGTCTCTCAGTCTGCTGTTGTCTGCCGTGCATAGTTGCAATCTTACCTGCGTTGACAAATAAGGATGGGGCTACAGAGCAAGAGATTAACAGCTTACCTAAGTTCAAATTCCGCAGGATTGGTGATTTTGAGATAGTTAACGGTCAGTTCCAAGAATCATCAGGAGGATCTAAAACCGAATGTGATGCCAGTACACTAAATGAGCATGTAATTTCCCAGGATCATGACTGCTGCATCTGCCTGGAAGTCTACCAGAATGGAGAAGAACTGCGCCAACTGCCTTGCCATCACCGTTTTCACTGTGCCTGCATAGATAAATGGCTACGCAAGAGAACTATTTGCCCTATGTGCAAGTTTGACTTCTTGAAGCCTATATACGGAGATGGTAGGACAATCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

352

Amino Acids

38.99

Weight (kDa)

6.21

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	294 - 336	3.6e-12	Ring finger domain
zf-RING_11	PF17123	294 - 322	4.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	295 - 335	5.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	298 - 336	4.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018073)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13390
rosa_chinensis	RchiOBHm_Chr1g0352711
rosa_laevigata	RLG00000028317
rosa_multiflora	Rmu_sc0006445.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302420
rosa_rugosa	Rorug01G0231300 Rorug01G0231400
rosa_samantha	Rh1AG244400 Rh1BG215200 Rh1CG228200 Rh1DG241200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	234, 709
AccB1I	GGYRCC	3 cut(s)	112, 125, 298
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	1 cut(s)	123
AciI	CCGC	8 cut(s)	82, 91, 123, 142, 284, 293, 552, 766
AclWI	GGATC	2 cut(s)	829, 882
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	4 cut(s)	56, 120, 490, 847
AfiI	CCNNNNNNNGG	4 cut(s)	50, 122, 454, 1031
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	2 cut(s)	760, 1021
AjnI	CCWGG	2 cut(s)	870, 894
AluBI	AGCT	6 cut(s)	48, 172, 195, 442, 557, 747
AluI	AGCT	6 cut(s)	48, 172, 195, 442, 557, 747
Alw21I	GWGCWC	2 cut(s)	109, 281
Alw26I	GTCTC	2 cut(s)	11, 662
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	829, 882
AoxI	GGCC	3 cut(s)	181, 444, 492
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	5 cut(s)	8, 172, 192, 638, 885
ApoI	RAATTY	1 cut(s)	761
AspLEI	GCGC	3 cut(s)	115, 274, 927
AspS9I	GGNCC	4 cut(s)	34, 181, 223, 445
AsuHPI	GGTGA	3 cut(s)	434, 788, 935
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	34, 223
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	3 cut(s)	112, 125, 298
BarI	GAAGNNNNNNTAC	2 cut(s)	1013, 1045
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	109, 281
BbvI	GCAGC	4 cut(s)	159, 204, 625, 872
BccI	CCATC	4 cut(s)	629, 713, 948, 1031
BceAI	ACGGC	5 cut(s)	129, 286, 297, 507, 664
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	872, 896
BcoDI	GTCTC	2 cut(s)	11, 662
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	213, 726
BfoI	RGCGCY	2 cut(s)	116, 275
BfuAI	ACCTGC	2 cut(s)	234, 709
BisI	GCNGC	8 cut(s)	9, 92, 124, 173, 193, 293, 639, 886
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	8 cut(s)	10, 93, 125, 174, 194, 294, 640, 887
Bme1390I	CCNGG	2 cut(s)	872, 896
Bme18I	GGWCC	2 cut(s)	34, 223
BmgT120I	GGNCC	4 cut(s)	34, 181, 223, 445
BmiI	GGNNCC	5 cut(s)	114, 127, 137, 236, 300
BmrFI	CCNGG	2 cut(s)	872, 896
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	3 cut(s)	556, 829, 897
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	501, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 122, 454, 1031
Bse118I	RCCGGY	5 cut(s)	87, 109, 115, 128, 295
Bse1I	ACTGG	2 cut(s)	542, 843
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	872, 896
BseDI	CCNNGG	2 cut(s)	501, 870
BseGI	GGATG	2 cut(s)	166, 724
BseLI	CCNNNNNNNGG	4 cut(s)	50, 122, 454, 1031
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	266, 408, 675
BseNI	ACTGG	2 cut(s)	542, 843
BseRI	GAGGAG	5 cut(s)	128, 179, 182, 470, 561
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	159, 204, 625, 872
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	183, 446, 494
BshNI	GGYRCC	3 cut(s)	112, 125, 298
BsiHKAI	GWGCWC	2 cut(s)	109, 281
BsiSI	CCGG	5 cut(s)	88, 110, 116, 129, 296
BslI	CCNNNNNNNGG	4 cut(s)	50, 122, 454, 1031
BsmAI	GTCTC	2 cut(s)	11, 662
BsnI	GGCC	3 cut(s)	183, 446, 494
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	109, 281
Bsp143I	GATC	2 cut(s)	821, 874
Bsp1720I	GCTNAGC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	8 cut(s)	82, 91, 123, 142, 284, 293, 552, 766
BspANI	GGCC	3 cut(s)	183, 446, 494
BspCNI	CTCAG	3 cut(s)	267, 407, 674
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	2 cut(s)	615, 877
BspLI	GGNNCC	5 cut(s)	114, 127, 137, 236, 300
BspMI	ACCTGC	2 cut(s)	234, 709
BspPI	GGATC	2 cut(s)	829, 882
BspT104I	TTCGAA	1 cut(s)	203
BspT107I	GGYRCC	3 cut(s)	112, 125, 298
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	5 cut(s)	87, 109, 115, 128, 295
BsrI	ACTGG	2 cut(s)	542, 843
BssAI	RCCGGY	5 cut(s)	87, 109, 115, 128, 295
BssECI	CCNNGG	2 cut(s)	501, 870
BssMI	GATC	2 cut(s)	821, 874
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	872, 896
Bst4CI	ACNGT	5 cut(s)	484, 606, 797, 947, 956
Bst6I	CTCTTC	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	7 cut(s)	6, 134, 270, 444, 525, 550, 961
BstDEI	CTNAG	5 cut(s)	275, 335, 394, 661, 753
BstDSI	CCRYGG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	166, 724
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	2 cut(s)	116, 275
BstHHI	GCGC	3 cut(s)	115, 274, 927
BstKTI	GATC	2 cut(s)	824, 877
BstMAI	GTCTC	2 cut(s)	11, 662
BstMBI	GATC	2 cut(s)	821, 874
BstMWI	GCNNNNNNNGC	8 cut(s)	97, 129, 189, 298, 554, 891, 931, 1002
BstNI	CCWGG	2 cut(s)	872, 896
BstNSI	RCATGY	2 cut(s)	648, 863
BstSCI	CCNGG	2 cut(s)	870, 894
BstSFI	CTRYAG	2 cut(s)	213, 726
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	159, 204, 625, 872
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	821
BsuRI	GGCC	3 cut(s)	183, 446, 494
BtgI	CCRYGG	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	166, 724
BtsIMutI	CAGTG	2 cut(s)	516, 952
BveI	ACCTGC	2 cut(s)	234, 709
Cac8I	GCNNGC	7 cut(s)	6, 134, 270, 444, 525, 550, 961
CciI	TCATGA	2 cut(s)	615, 877
CfoI	GCGC	3 cut(s)	115, 274, 927
Cfr10I	RCCGGY	5 cut(s)	87, 109, 115, 128, 295
Cfr13I	GGNCC	4 cut(s)	34, 181, 223, 445
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	55, 119, 489, 846
CviAII	CATG	6 cut(s)	97, 502, 616, 645, 860, 878
CviQI	GTAC	4 cut(s)	55, 119, 489, 846
DdeI	CTNAG	5 cut(s)	275, 335, 394, 661, 753
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	2 cut(s)	823, 876
DpnII	GATC	2 cut(s)	821, 874
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	3 cut(s)	131, 299, 567
Eco130I	CCWWGG	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	2 cut(s)	34, 223
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	870, 894
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	6 cut(s)	100, 505, 619, 648, 863, 881
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FatI	CATG	6 cut(s)	96, 501, 615, 644, 859, 877
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	8 cut(s)	9, 92, 124, 173, 193, 293, 639, 886
FokI	GGATG	2 cut(s)	173, 731
Fsp4HI	GCNGC	8 cut(s)	9, 92, 124, 173, 193, 293, 639, 886
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	3 cut(s)	114, 273, 926
GluI	GCNGC	8 cut(s)	9, 92, 124, 173, 193, 293, 639, 886
HaeII	RGCGCY	2 cut(s)	116, 275
HaeIII	GGCC	3 cut(s)	183, 446, 494
HapII	CCGG	5 cut(s)	88, 110, 116, 129, 296
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	3 cut(s)	115, 274, 927
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	6 cut(s)	100, 505, 619, 648, 863, 881
Hin6I	GCGC	3 cut(s)	113, 272, 925
HinP1I	GCGC	3 cut(s)	113, 272, 925
HincII	GTYRAC	2 cut(s)	708, 793
HindII	GTYRAC	2 cut(s)	708, 793
HinfI	GANTC	3 cut(s)	76, 531, 809
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	5 cut(s)	88, 110, 116, 129, 296
HphI	GGTGA	3 cut(s)	434, 788, 935
Hpy166II	GTNNAC	5 cut(s)	107, 708, 793, 848, 904
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	5 cut(s)	221, 616, 816, 878, 1018
Hpy8I	GTNNAC	5 cut(s)	107, 708, 793, 848, 904
Hpy99I	CGWCG	2 cut(s)	74, 105
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	5 cut(s)	484, 606, 797, 947, 956
HpyCH4V	TGCA	9 cut(s)	4, 107, 476, 596, 684, 692, 888, 963, 1005
HpyF10VI	GCNNNNNNNGC	8 cut(s)	97, 129, 189, 298, 554, 891, 931, 1002
HpyF3I	CTNAG	5 cut(s)	275, 335, 394, 661, 753
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	100, 505, 619, 648, 863, 881
HspAI	GCGC	3 cut(s)	113, 272, 925
KasI	GGCGCC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	821, 874
LmnI	GCTCC	5 cut(s)	141, 169, 457, 554, 574
Lsp1109I	GCAGC	4 cut(s)	159, 204, 625, 872
LweI	GCATC	3 cut(s)	556, 829, 897
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	823, 876
MboI	GATC	2 cut(s)	821, 874
MboII	GAAGA	3 cut(s)	192, 477, 929
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	109, 281
MluCI	AATT	3 cut(s)	496, 761, 864
Mly113I	GGCGCC	1 cut(s)	113
MseI	TTAA	3 cut(s)	560, 741, 792
MspI	CCGG	5 cut(s)	88, 110, 116, 129, 296
MspR9I	CCNGG	2 cut(s)	872, 896
MvaI	CCWGG	2 cut(s)	872, 896
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	8 cut(s)	97, 129, 189, 298, 554, 891, 931, 1002
NarI	GGCGCC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	821, 874
NlaIII	CATG	6 cut(s)	100, 505, 619, 648, 863, 881
NlaIV	GGNNCC	5 cut(s)	114, 127, 137, 236, 300
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	648, 863
NspV	TTCGAA	1 cut(s)	203
PagI	TCATGA	2 cut(s)	615, 877
PciI	ACATGT	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	76, 531, 809
PkrI	GCNGC	8 cut(s)	10, 93, 125, 174, 194, 294, 640, 887
PluTI	GGCGCC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	870, 894
PspGI	CCWGG	2 cut(s)	870, 894
PspN4I	GGNNCC	5 cut(s)	114, 127, 137, 236, 300
PspPI	GGNCC	4 cut(s)	34, 181, 223, 445
PsuI	RGATCY	1 cut(s)	821
RsaI	GTAC	4 cut(s)	56, 120, 490, 847
RsaNI	GTAC	4 cut(s)	55, 119, 489, 846
SaqAI	TTAA	3 cut(s)	560, 741, 792
SatI	GCNGC	8 cut(s)	9, 92, 124, 173, 193, 293, 639, 886
Sau3AI	GATC	2 cut(s)	821, 874
Sau96I	GGNCC	4 cut(s)	34, 181, 223, 445
ScrFI	CCNGG	2 cut(s)	872, 896
SduI	GDGCHC	2 cut(s)	109, 281
SfaNI	GCATC	3 cut(s)	556, 829, 897
SfcI	CTRYAG	2 cut(s)	213, 726
SfoI	GGCGCC	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	203
SgrAI	CRCCGGYG	2 cut(s)	109, 295
SinI	GGWCC	2 cut(s)	34, 223
Sse9I	AATT	3 cut(s)	496, 761, 864
SsiI	CCGC	8 cut(s)	82, 91, 123, 142, 284, 293, 552, 766
SspDI	GGCGCC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	870, 894
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	5 cut(s)	484, 606, 797, 947, 956
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	496, 761, 864
TatI	WGTACW	1 cut(s)	845
TauI	GCSGC	3 cut(s)	94, 126, 295
TfiI	GAWTC	3 cut(s)	76, 531, 809
Tru1I	TTAA	3 cut(s)	560, 741, 792
Tru9I	TTAA	3 cut(s)	560, 741, 792
TscAI	CASTG	2 cut(s)	516, 959
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	8, 172, 192, 638, 885
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	1047
TspRI	CASTG	2 cut(s)	516, 959
VneI	GTGCAC	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	34, 223
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	761
XceI	RCATGY	2 cut(s)	648, 863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.