Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018073

Physical Location & Seq

Genomic Coordinates Forward (+)

33538304 .. 33542377

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAGGCGGCATGGGACACGAGAATGGCAATGGACCCCATGCCCAGGGTCGGCTACTCAATCGCCGCCGACGAGCTCCTCCGCAACCGGCGGCTCATGCGGCGGGCGCCGGCACCAGTACGCGGCACCGGTTGGCTCCTGCGCCGTGTGATGAGGCTGAATGAGCAGCCGGTTCGGGCCGGGGAGATTTCCGGGGAGGAGCTGCAAGTGGGCCACAGCAGCTCCTCCTTGAAGTTGTCTATAATTCTGGACTTGCTGTGGAATCTGTCGTTTGTGGTGGTTGGGATCACAATGCTGGGGCTGAGCGCGGCGGAGAAGTCTCCGGTGCCTTTGAGGTTTTGGGCGAGTGGGTATGTGTTGCTCTCTGCAGTTCATATTGGGTGTGTGGTTGTAGGCAAGAGAAGAGAGTTGGGTTTCGGCTCAGAGGGTTGGAGTTCTGGAAGTGAAGGCGAAAGTGACGAGAGTGAGCAGGCCCGGGCTGAGGAGTATAGAAGAGATTTTGCAAAGACTGTGAGTACGGCCAATTCCATGGCTTCAGTGGTTTGGTGGCTCGCTGGATTCTACTGGGTGGTTGGTGGCGAAGCTTTAAGTGACGCTCCTCGTCTATTCTGGTTAAGCTTGAACACATTTTCCTCTGATGTGATTTCTTCTGCACGATTGTCTGAAGTGTGTTTATGTGTATTTAACTACTTAGTAAACATGTCTCTCTTGCAGGCTTTGTGTTGCATTTCTACTGTGCGATATCATGATCTTCATTTTATGTGTTGCTGCCACATGTCTTTATTGTCTCTCGGTCTGCTGTTGTCTGCCGTGCATACTTGCAATCTTACCTGCTTTGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

281

Amino Acids

31.15

Weight (kDa)

6.99

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018073)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13390
rosa_chinensis	RchiOBHm_Chr1g0352711
rosa_laevigata	RLG00000028317
rosa_multiflora	Rmu_sc0006445.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302420
rosa_rugosa	Rorug01G0231300 Rorug01G0231400
rosa_samantha	Rh1AG244400 Rh1BG215200 Rh1CG228200 Rh1DG241200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	4 cut(s)	106, 112, 125, 325
AccII	CGCG	2 cut(s)	123, 308
AciI	CCGC	9 cut(s)	8, 66, 82, 91, 100, 103, 123, 308, 311
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	519
AcuI	CTGAAG	2 cut(s)	519, 684
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	120, 517
AfiI	CCNNNNNNNGG	4 cut(s)	45, 50, 122, 481
AflIII	ACRYGT	2 cut(s)	699, 774
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	232, 622
AjnI	CCWGG	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	5 cut(s)	76, 202, 222, 584, 618
AluI	AGCT	5 cut(s)	76, 202, 222, 584, 618
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	3 cut(s)	324, 708, 792
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	4 cut(s)	177, 211, 471, 519
ApeKI	GCWGC	4 cut(s)	166, 202, 219, 768
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	3 cut(s)	109, 144, 308
AspS9I	GGNCC	4 cut(s)	34, 177, 211, 472
AsuC2I	CCSGG	4 cut(s)	181, 193, 475, 476
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	4 cut(s)	106, 112, 125, 325
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	178, 189, 231, 755
BceAI	ACGGC	3 cut(s)	129, 534, 794
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	46
BcnI	CCSGG	4 cut(s)	181, 193, 475, 476
BcoDI	GTCTC	3 cut(s)	324, 708, 792
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	839
BlpI	GCTNAGC	1 cut(s)	302
Bme1390I	CCNGG	5 cut(s)	46, 181, 193, 475, 476
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	4 cut(s)	34, 177, 211, 472
BmiI	GGNNCC	6 cut(s)	36, 108, 114, 127, 137, 327
BmrFI	CCNGG	5 cut(s)	46, 181, 193, 475, 476
BmrI	ACTGGG	1 cut(s)	574
BmuI	ACTGGG	1 cut(s)	574
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuMI	CCSGG	4 cut(s)	181, 193, 475, 476
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	6 cut(s)	44, 45, 180, 192, 474, 528
BsaWI	WCCGGW	2 cut(s)	128, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 50, 122, 481
Bse118I	RCCGGY	4 cut(s)	87, 109, 128, 169
Bse1I	ACTGG	2 cut(s)	116, 569
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	6 cut(s)	44, 45, 180, 192, 474, 528
BseLI	CCNNNNNNNGG	4 cut(s)	45, 50, 122, 481
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	293, 435, 471
BseNI	ACTGG	2 cut(s)	116, 569
BseRI	GAGGAG	5 cut(s)	68, 212, 214, 497, 588
BseXI	GCAGC	4 cut(s)	178, 189, 231, 755
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	636
Bsh1236I	CGCG	2 cut(s)	123, 308
BshFI	GGCC	4 cut(s)	179, 213, 473, 521
BshNI	GGYRCC	4 cut(s)	106, 112, 125, 325
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	8 cut(s)	88, 110, 129, 170, 180, 192, 323, 475
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	45, 50, 122, 481
BsmAI	GTCTC	3 cut(s)	324, 708, 792
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	179, 213, 473, 521
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	285, 748
Bsp1720I	GCTNAGC	1 cut(s)	302
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	9 cut(s)	8, 66, 82, 91, 100, 103, 123, 308, 311
BspANI	GGCC	4 cut(s)	179, 213, 473, 521
BspCNI	CTCAG	3 cut(s)	294, 434, 472
BspFNI	CGCG	2 cut(s)	123, 308
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	6 cut(s)	36, 108, 114, 127, 137, 327
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	4 cut(s)	106, 112, 125, 325
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	4 cut(s)	87, 109, 128, 169
BsrI	ACTGG	2 cut(s)	116, 569
BssAI	RCCGGY	4 cut(s)	87, 109, 128, 169
BssECI	CCNNGG	6 cut(s)	44, 45, 180, 192, 474, 528
BssMI	GATC	2 cut(s)	285, 748
BssNI	GRCGYC	1 cut(s)	107
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	511, 736
Bst6I	CTCTTC	2 cut(s)	397, 487
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	6 cut(s)	6, 105, 111, 471, 552, 714
BstDEI	CTNAG	4 cut(s)	302, 421, 480, 691
BstDSI	CCRYGG	1 cut(s)	528
BstFNI	CGCG	2 cut(s)	123, 308
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	3 cut(s)	109, 144, 308
BstKTI	GATC	2 cut(s)	288, 751
BstMAI	GTCTC	3 cut(s)	324, 708, 792
BstMBI	GATC	2 cut(s)	285, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 100, 106, 163, 219
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	2 cut(s)	703, 778
BstSCI	CCNGG	5 cut(s)	44, 179, 191, 473, 474
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	2 cut(s)	123, 308
BstV1I	GCAGC	4 cut(s)	178, 189, 231, 755
BstXI	CCANNNNNNTGG	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	179, 213, 473, 521
BtgI	CCRYGG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	6 cut(s)	6, 105, 111, 471, 552, 714
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	3 cut(s)	109, 144, 308
Cfr10I	RCCGGY	4 cut(s)	87, 109, 128, 169
Cfr13I	GGNCC	4 cut(s)	34, 177, 211, 472
Cfr9I	CCCGGG	1 cut(s)	474
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	119, 516
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	7 cut(s)	12, 40, 97, 529, 700, 746, 775
CviQI	GTAC	2 cut(s)	119, 516
DdeI	CTNAG	4 cut(s)	302, 421, 480, 691
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	2 cut(s)	287, 750
DpnII	GATC	2 cut(s)	285, 748
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	397, 487
EarI	CTCTTC	2 cut(s)	397, 487
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	519, 684
Eco88I	CYCGRG	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	7 cut(s)	15, 43, 100, 532, 703, 749, 778
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	7 cut(s)	11, 39, 96, 528, 699, 745, 774
FauI	CCCGC	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	78
GlaI	GCGC	3 cut(s)	108, 143, 307
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	179, 213, 473, 521
HapII	CCGG	8 cut(s)	88, 110, 129, 170, 180, 192, 323, 475
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	3 cut(s)	109, 144, 308
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	7 cut(s)	15, 43, 100, 532, 703, 749, 778
Hin6I	GCGC	3 cut(s)	107, 142, 306
HinP1I	GCGC	3 cut(s)	107, 142, 306
HindIII	AAGCTT	2 cut(s)	582, 616
HinfI	GANTC	2 cut(s)	262, 558
HpaII	CCGG	8 cut(s)	88, 110, 129, 170, 180, 192, 323, 475
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	3 cut(s)	424, 637, 664
Hpy188III	TCNNGA	3 cut(s)	248, 438, 746
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	511, 736
HpyCH4V	TGCA	9 cut(s)	4, 205, 368, 503, 653, 712, 726, 814, 822
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 100, 106, 163, 219
HpyF3I	CTNAG	4 cut(s)	302, 421, 480, 691
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	7 cut(s)	15, 43, 100, 532, 703, 749, 778
HspAI	GCGC	3 cut(s)	107, 142, 306
KasI	GGCGCC	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	285, 748
LmnI	GCTCC	5 cut(s)	81, 141, 199, 227, 601
Lsp1109I	GCAGC	4 cut(s)	178, 189, 231, 755
MaeIII	GTNAC	2 cut(s)	455, 590
MalI	GATC	2 cut(s)	287, 750
MboI	GATC	2 cut(s)	285, 748
MboII	GAAGA	4 cut(s)	414, 504, 639, 743
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	243, 523
Mly113I	GGCGCC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	9 cut(s)	89, 147, 190, 235, 327, 418, 475, 609, 643
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	3 cut(s)	587, 614, 684
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	8 cut(s)	88, 110, 129, 170, 180, 192, 323, 475
MspR9I	CCNGG	5 cut(s)	46, 181, 193, 475, 476
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	2 cut(s)	123, 308
MwoI	GCNNNNNNNGC	5 cut(s)	97, 100, 106, 163, 219
NaeI	GCCGGC	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	107
NciI	CCSGG	4 cut(s)	181, 193, 475, 476
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	285, 748
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	7 cut(s)	15, 43, 100, 532, 703, 749, 778
NlaIV	GGNNCC	6 cut(s)	36, 108, 114, 127, 137, 327
NmuCI	GTSAC	2 cut(s)	455, 590
NspI	RCATGY	2 cut(s)	703, 778
PagI	TCATGA	1 cut(s)	745
PasI	CCCWGGG	1 cut(s)	45
PciI	ACATGT	2 cut(s)	699, 774
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	262, 558
PinAI	ACCGGT	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	110
PscI	ACATGT	2 cut(s)	699, 774
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	6 cut(s)	36, 108, 114, 127, 137, 327
PspPI	GGNCC	4 cut(s)	34, 177, 211, 472
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	2 cut(s)	120, 517
RsaNI	GTAC	2 cut(s)	119, 516
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	587, 614, 684
Sau3AI	GATC	2 cut(s)	285, 748
Sau96I	GGNCC	4 cut(s)	34, 177, 211, 472
ScrFI	CCNGG	5 cut(s)	46, 181, 193, 475, 476
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	78, 204, 224, 338, 586, 620, 833
SfcI	CTRYAG	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	34
SmaI	CCCGGG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	23
SrfI	GCCCGGGC	1 cut(s)	476
Sse9I	AATT	2 cut(s)	243, 523
SsiI	CCGC	9 cut(s)	8, 66, 82, 91, 100, 103, 123, 308, 311
SspDI	GGCGCC	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	5 cut(s)	44, 179, 191, 473, 474
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	511, 736
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	2 cut(s)	243, 523
TauI	GCSGC	6 cut(s)	11, 68, 94, 103, 126, 311
TfiI	GAWTC	2 cut(s)	262, 558
Tru1I	TTAA	3 cut(s)	587, 614, 684
Tru9I	TTAA	3 cut(s)	587, 614, 684
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	455, 590
TseI	GCWGC	4 cut(s)	166, 202, 219, 768
Tsp45I	GTSAC	2 cut(s)	455, 590
TspDTI	ATGAA	2 cut(s)	362, 743
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	2 cut(s)	703, 778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.