FvH4_7g13520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018474
Physical Location & Seq
Reverse (-)
12117087 .. 12126998
9912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13520.t1

Sequence Viewer

Length: 600 bp
ATGGCGGATAGGAAGTTGCCAGTCTCAGGTCCTAACAGCAAAAAGATTAAGATTGAAGTCCAAGGGGATAGATCTGAAACCTCGGGCAACTGCTTTTCACCAAGTGGTTTCCAGTCCTTCACATATGCAGATTTATTGTATTATGTAAGCATTGATAAGGAGGGCAAGATTTTCAACTATTCAGATTTGCTGAAGGGAGGTGCAGACAACGAATACTGCACTGTTTGTAAAGTACCCGGGCATGGTACTAATGTGTGTCTCAGACCCTACATAAAAGATTGGCCAGGGTTCCCTATTAATGGCATTGCAATTCTTCAGCGTCCAATTTGGATGCCACCACTTTACCGTCCACAGGTAGCAACTCTTCGGGACTACTGTGCAACTGTTAGACGCCAGCGTCGGGCAACCATTAGACGCCAACATATGCAAATGCGTAGACGCTTGCACATGCCAGTTCATGTCCATTCACTTCAGCGACCATTCATTGTCCCAGCACCTTCAATTTATCGAGTCAGGACTGTGGGCCGTAGGGATCAACCACACTGCAGCCTGTGTGGTGCAATAGGGCACGACATTTGCACTTGCAGCAAGCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.65

Weight (kDa)

9.78

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018474)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13520
rosa_chinensis RchiOBHm_Chr1g0353041
rosa_laevigata RLG00000028295
rosa_roxburghii Rroxscaffold_4G00302150
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG246500 Rh1BG216800 Rh1CG230100 Rh1DG242900
rosa_wichuraiana Rw1G021320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 540
AcoI YGGCCR 1 cut(s) 281
AcuI CTGAAG 3 cut(s) 212, 299, 455
AcyI GRCGYC 2 cut(s) 391, 415
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 234, 247
AfiI CCNNNNNNNGG 5 cut(s) 26, 242, 299, 352, 400
AgsI TTSAA 3 cut(s) 56, 175, 501
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 592
AluI AGCT 1 cut(s) 592
Alw26I GTCTC 2 cut(s) 28, 263
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 2 cut(s) 82, 236
AoxI GGCC 2 cut(s) 281, 523
ApeKI GCWGC 2 cut(s) 546, 585
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 29, 523
AsuC2I CCSGG 2 cut(s) 237, 238
AsuHPI GGTGA 1 cut(s) 90
AvaI CYCGRG 2 cut(s) 82, 236
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 570
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BalI TGGCCA 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbvI GCAGC 1 cut(s) 558
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 2 cut(s) 237, 238
BcoDI GTCTC 2 cut(s) 28, 263
BfmI CTRYAG 1 cut(s) 544
BglII AGATCT 1 cut(s) 71
BisI GCNGC 2 cut(s) 547, 586
BlsI GCNGC 2 cut(s) 548, 587
Bme1390I CCNGG 3 cut(s) 237, 238, 285
Bme18I GGWCC 1 cut(s) 29
BmeT110I CYCGRG 2 cut(s) 82, 236
BmgT120I GGNCC 2 cut(s) 29, 523
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 3 cut(s) 237, 238, 285
BmsI GCATC 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 237, 238
BsaHI GRCGYC 2 cut(s) 391, 415
BsaJI CCNNGG 4 cut(s) 61, 81, 236, 284
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 242, 299, 352, 400
Bse1I ACTGG 3 cut(s) 20, 112, 452
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 61, 81, 236, 284
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 5 cut(s) 26, 242, 299, 352, 400
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 39, 274
BseNI ACTGG 3 cut(s) 20, 112, 452
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 490
BsgI GTGCAG 2 cut(s) 202, 222
BshFI GGCC 2 cut(s) 283, 525
BsiHKCI CYCGRG 2 cut(s) 82, 236
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 383, 473
BslI CCNNNNNNNGG 5 cut(s) 26, 242, 299, 352, 400
BsmAI GTCTC 2 cut(s) 28, 263
BsmFI GGGAC 2 cut(s) 383, 473
BsnI GGCC 2 cut(s) 283, 525
BsoBI CYCGRG 2 cut(s) 82, 236
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 71, 532
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 283, 525
BspCNI CTCAG 2 cut(s) 38, 273
BspLI GGNNCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 548
BspPI GGATC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 3 cut(s) 20, 112, 452
BssECI CCNNGG 4 cut(s) 61, 81, 236, 284
BssMI GATC 2 cut(s) 71, 532
BssNI GRCGYC 2 cut(s) 391, 415
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 5 cut(s) 223, 347, 377, 385, 520
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 2 cut(s) 391, 415
BstC8I GCNNGC 4 cut(s) 395, 443, 590, 594
BstDEI CTNAG 2 cut(s) 25, 260
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 2 cut(s) 74, 535
BstMAI GTCTC 2 cut(s) 28, 263
BstMBI GATC 2 cut(s) 71, 532
BstMWI GCNNNNNNNGC 1 cut(s) 585
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 235, 236, 283
BstSFI CTRYAG 1 cut(s) 544
BstSLI GKGCMC 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 2 cut(s) 283, 525
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 219, 541
Cac8I GCNNGC 4 cut(s) 395, 443, 590, 594
Cfr13I GGNCC 2 cut(s) 29, 523
Cfr9I CCCGGG 1 cut(s) 236
CseI GACGC 5 cut(s) 308, 386, 399, 423, 447
Csp6I GTAC 2 cut(s) 233, 246
CviAII CATG 3 cut(s) 242, 448, 458
CviJI RGCY 5 cut(s) 283, 525, 549, 592, 596
CviKI_1 RGCY 5 cut(s) 283, 525, 549, 592, 596
CviQI GTAC 2 cut(s) 233, 246
DdeI CTNAG 2 cut(s) 25, 260
DpnI GATC 2 cut(s) 73, 534
DpnII GATC 2 cut(s) 71, 532
DraIII CACNNNGTG 1 cut(s) 104
DrdI GACNNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 396
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 3 cut(s) 212, 299, 455
Eco88I CYCGRG 2 cut(s) 82, 236
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 3 cut(s) 245, 451, 461
FaiI YATR 9 cut(s) 124, 126, 144, 243, 272, 423, 425, 449, 459
FaqI GGGAC 2 cut(s) 383, 473
FatI CATG 3 cut(s) 241, 447, 457
FauNDI CATATG 2 cut(s) 124, 423
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 547, 586
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 547, 586
GluI GCNGC 2 cut(s) 547, 586
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 283, 525
HapII CCGG 1 cut(s) 237
HgaI GACGC 5 cut(s) 308, 386, 399, 423, 447
Hin1I GRCGYC 2 cut(s) 391, 415
Hin1II CATG 3 cut(s) 245, 451, 461
HinfI GANTC 1 cut(s) 510
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 350, 437
Hpy188I TCNGA 3 cut(s) 76, 184, 263
Hpy188III TCNNGA 2 cut(s) 368, 514
Hpy8I GTNNAC 2 cut(s) 350, 437
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 3 cut(s) 127, 187, 507
HpyCH4III ACNGT 5 cut(s) 223, 347, 377, 385, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 585
HpyF3I CTNAG 2 cut(s) 25, 260
Hsp92I GRCGYC 2 cut(s) 391, 415
Hsp92II CATG 3 cut(s) 245, 451, 461
Kzo9I GATC 2 cut(s) 71, 532
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 1 cut(s) 321
MalI GATC 2 cut(s) 73, 534
MboI GATC 2 cut(s) 71, 532
MboII GAAGA 2 cut(s) 305, 356
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 283
MluCI AATT 3 cut(s) 309, 324, 501
MluNI TGGCCA 1 cut(s) 283
MlyI GAGTC 1 cut(s) 519
MnlI CCTC 3 cut(s) 91, 154, 191
Mox20I TGGCCA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 283
MseI TTAA 2 cut(s) 48, 297
Msp20I TGGCCA 1 cut(s) 283
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 3 cut(s) 237, 238, 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 585
NciI CCSGG 2 cut(s) 237, 238
NdeI CATATG 2 cut(s) 124, 423
NdeII GATC 2 cut(s) 71, 532
NlaIII CATG 3 cut(s) 245, 451, 461
NlaIV GGNNCC 1 cut(s) 290
NspI RCATGY 1 cut(s) 451
PkrI GCNGC 2 cut(s) 548, 587
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PpuMI RGGWCCY 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 2 cut(s) 29, 523
PspPPI RGGWCCY 1 cut(s) 29
PstI CTGCAG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 2 cut(s) 234, 247
RsaNI GTAC 2 cut(s) 233, 246
SaqAI TTAA 2 cut(s) 48, 297
SatI GCNGC 2 cut(s) 547, 586
Sau3AI GATC 2 cut(s) 71, 532
Sau96I GGNCC 2 cut(s) 29, 523
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 3 cut(s) 237, 238, 285
SduI GDGCHC 1 cut(s) 570
SetI ASST 6 cut(s) 31, 83, 202, 357, 499, 594
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 544
SinI GGWCC 1 cut(s) 29
SmaI CCCGGG 1 cut(s) 238
Sse9I AATT 3 cut(s) 309, 324, 501
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 3 cut(s) 235, 236, 283
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 5 cut(s) 223, 347, 377, 385, 520
TaqI TCGA 1 cut(s) 508
TasI AATT 3 cut(s) 309, 324, 501
Tru1I TTAA 2 cut(s) 48, 297
Tru9I TTAA 2 cut(s) 48, 297
TscAI CASTG 2 cut(s) 226, 548
TseI GCWGC 2 cut(s) 546, 585
TspDTI ATGAA 2 cut(s) 446, 472
TspMI CCCGGG 1 cut(s) 236
TspRI CASTG 2 cut(s) 226, 548
VpaK11BI GGWCC 1 cut(s) 29
VspI ATTAAT 1 cut(s) 297
XceI RCATGY 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.