Rh1BG216800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018474
Physical Location & Seq
Reverse (-)
33687722 .. 33690360
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG216800.1

Sequence Viewer

Length: 504 bp
ATGGCAGATAACTTGCCACTCTCAATTCCTGAAGGCCAGGAGATTAAGATTGAAGTCCAAGGGGATCAATCTGAAACCTTGTTGCTGACCGGAGGTGCAAACAACCTGAGCAATCAATACTGCACTATTTGCAAAGAACCTGGGCATGATACTAATGTTTGTCCCCGACCCTTCATACTAGATTGGCTTGGGTTCCCTATCAATGGCAGCCCAATTGTTCAGCGTCCGCCTTGGATCCCACCAATTGGTCTTCCACACATGCCAACTGTTCGCCAGCACTTGGCAACTGTTAGACGCCAGCGCCGGGCAACCATTAGACGCGGACACATGCAAACTTTTGGACGCCCACAAATGCCAGTTTGTGTCCATTCACTTCAGCAACCATTCATAGTCGGAGCACCTTCAATTGATAGAGACAGGACTGTGGCCAATAGGAGGCAACCAGAGTGCAGTCGTTGCGGCAGGGCTGGGCACAATATTCGTACCTGCGGTGAATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.6

Weight (kDa)

9.26

Isoelectric Point (pI)

72.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018474)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13520
rosa_chinensis RchiOBHm_Chr1g0353041
rosa_laevigata RLG00000028295
rosa_roxburghii Rroxscaffold_4G00302150
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG246500 Rh1BG216800 Rh1CG230100 Rh1DG242900
rosa_wichuraiana Rw1G021320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AccB7I CCANNNNNTGG 2 cut(s) 245, 280
AccII CGCG 1 cut(s) 321
AciI CCGC 4 cut(s) 227, 321, 459, 489
AclWI GGATC 3 cut(s) 72, 229, 242
AcoI YGGCCR 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 51, 359
AcyI GRCGYC 2 cut(s) 295, 343
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 5 cut(s) 203, 245, 280, 304, 435
AgsI TTSAA 2 cut(s) 53, 405
AjnI CCWGG 2 cut(s) 36, 139
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 72, 229, 242
AoxI GGCC 2 cut(s) 34, 426
ApeKI GCWGC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 474
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 2 cut(s) 38, 141
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 208, 460
BlsI GCNGC 2 cut(s) 209, 461
Bme1390I CCNGG 3 cut(s) 38, 141, 305
BmiI GGNNCC 2 cut(s) 194, 236
BmrFI CCNGG 3 cut(s) 38, 141, 305
BpiI GAAGAC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 305
BsaHI GRCGYC 2 cut(s) 295, 343
BsaJI CCNNGG 3 cut(s) 58, 140, 230
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 245, 280, 304, 435
Bse1I ACTGG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 38, 141
BseDI CCNNGG 3 cut(s) 58, 140, 230
BseLI CCNNNNNNNGG 5 cut(s) 203, 245, 280, 304, 435
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 2 cut(s) 106, 469
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 36, 428
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 2 cut(s) 90, 304
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 5 cut(s) 203, 245, 280, 304, 435
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 2 cut(s) 36, 428
Bsp1286I GDGCHC 2 cut(s) 400, 474
Bsp143I GATC 2 cut(s) 64, 234
BspACI CCGC 4 cut(s) 227, 321, 459, 489
BspANI GGCC 2 cut(s) 36, 428
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 194, 236
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 72, 229, 242
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 58, 140, 230
BssMI GATC 2 cut(s) 64, 234
BssNI GRCGYC 2 cut(s) 295, 343
BssT1I CCWWGG 2 cut(s) 58, 230
Bst2UI CCWGG 2 cut(s) 38, 141
Bst4CI ACNGT 3 cut(s) 268, 289, 424
BstACI GRCGYC 2 cut(s) 295, 343
BstAPI GCANNNNNTGC 2 cut(s) 129, 456
BstC8I GCNNGC 2 cut(s) 275, 299
BstDEI CTNAG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 67, 237
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 64, 234
BstMWI GCNNNNNNNGC 2 cut(s) 129, 456
BstNI CCWGG 2 cut(s) 38, 141
BstNSI RCATGY 2 cut(s) 262, 331
BstSCI CCNGG 3 cut(s) 36, 139, 303
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 2 cut(s) 36, 428
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 275, 299
CfoI GCGC 1 cut(s) 303
CseI GACGC 4 cut(s) 212, 303, 327, 351
Csp6I GTAC 1 cut(s) 483
CviAII CATG 3 cut(s) 146, 259, 328
CviJI RGCY 5 cut(s) 36, 187, 210, 428, 467
CviKI_1 RGCY 5 cut(s) 36, 187, 210, 428, 467
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 66, 236
DpnII GATC 2 cut(s) 64, 234
EaeI YGGCCR 1 cut(s) 426
EciI GGCGGA 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 58, 230
Eco57I CTGAAG 2 cut(s) 51, 359
EcoRII CCWGG 2 cut(s) 36, 139
EcoT14I CCWWGG 2 cut(s) 58, 230
ErhI CCWWGG 2 cut(s) 58, 230
FaeI CATG 3 cut(s) 149, 262, 331
FaiI YATR 5 cut(s) 147, 176, 260, 329, 389
FaqI GGGAC 1 cut(s) 147
FatI CATG 3 cut(s) 145, 258, 327
Fnu4HI GCNGC 2 cut(s) 208, 460
Fsp4HI GCNGC 2 cut(s) 208, 460
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 302
GluI GCNGC 2 cut(s) 208, 460
GsaI CCCAGC 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 2 cut(s) 36, 428
HapII CCGG 2 cut(s) 90, 304
HgaI GACGC 4 cut(s) 212, 303, 327, 351
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 2 cut(s) 295, 343
Hin1II CATG 3 cut(s) 149, 262, 331
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 1 cut(s) 494
HpaII CCGG 2 cut(s) 90, 304
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 2 cut(s) 73, 395
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 26, 181, 411
HpyCH4III ACNGT 3 cut(s) 268, 289, 424
HpyCH4V TGCA 5 cut(s) 98, 123, 132, 331, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 456
HpyF3I CTNAG 1 cut(s) 107
Hsp92I GRCGYC 2 cut(s) 295, 343
Hsp92II CATG 3 cut(s) 149, 262, 331
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 64, 234
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 179
MalI GATC 2 cut(s) 66, 236
MboI GATC 2 cut(s) 64, 234
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 3 cut(s) 213, 243, 405
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 400, 474
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 4 cut(s) 24, 213, 243, 405
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 2 cut(s) 86, 429
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 428
MspI CCGG 2 cut(s) 90, 304
MspR9I CCNGG 3 cut(s) 38, 141, 305
MunI CAATTG 3 cut(s) 213, 243, 405
MvaI CCWGG 2 cut(s) 38, 141
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 129, 456
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 64, 234
NlaIII CATG 3 cut(s) 149, 262, 331
NlaIV GGNNCC 2 cut(s) 194, 236
NspI RCATGY 2 cut(s) 262, 331
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 2 cut(s) 245, 280
PkrI GCNGC 2 cut(s) 209, 461
Psp6I CCWGG 2 cut(s) 36, 139
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 36, 139
PspN4I GGNNCC 2 cut(s) 194, 236
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 208, 460
Sau3AI GATC 2 cut(s) 64, 234
ScrFI CCNGG 3 cut(s) 38, 141, 305
SduI GDGCHC 2 cut(s) 400, 474
SetI ASST 6 cut(s) 80, 97, 108, 142, 403, 488
Sse9I AATT 4 cut(s) 24, 213, 243, 405
SsiI CCGC 4 cut(s) 227, 321, 459, 489
SspI AATATT 1 cut(s) 478
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 36, 139, 303
StyI CCWWGG 2 cut(s) 58, 230
TaaI ACNGT 3 cut(s) 268, 289, 424
TasI AATT 4 cut(s) 24, 213, 243, 405
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 163, 376
Van91I CCANNNNNTGG 2 cut(s) 245, 280
XceI RCATGY 2 cut(s) 262, 331
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.