Rroxscaffold_4G00302150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018474
Physical Location & Seq
Forward (+)
22562030 .. 22565951
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302150.1

Sequence Viewer

Length: 609 bp
ATGGCGGATAAGAACTTGCCACTCTCAATTCGTGAAGGCCAGGAGATTAAGATTGAAGTCCAAGGGGATCAATCTGAAACCTTGGGCTACTGCTTTCCACCAAGTGGTTTCCATTCCATAACATATGCAGATGTGTTGCGTTATGTTAACAATGATAAGGAAGCTAAGATTTCCAACTATTCAGCTTTGCTGACCGGAGGTGCAAACAACCTGAGCAATCAATACTGCACTATTTGCAAAGAACCTGGGCATGATACTAATGTTTGTCCCCGACCCTTCATACTAGATTGGCTTGGGTTCCCTATCAATGGCATCCCAATTGTTCAGCGTCCACCTTGGATCCCACCAATTGGTCTTCCACACATGCCAACTATTCGCCAGCACTTGGCAACTGTTAGACGCCGGCGCCGGGCAACCCTCAGACGAGGACACATGCAAACTTTTGGACGCCCGCAAATGCCAATTCGTGTCCATTCACTTCAGCAACCATTCATAGTCCGAGCACCTTCAATTGATAGAGGCAGGACTGTGGCCAATAGGAGGCAACCAGAGTGCAGTCGTTGTGGCAGGGCTGGGCACAATATTCGCACCTGCGGTGAATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

202

Amino Acids

22.77

Weight (kDa)

9.92

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018474)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13520
rosa_chinensis RchiOBHm_Chr1g0353041
rosa_laevigata RLG00000028295
rosa_roxburghii Rroxscaffold_4G00302150
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG246500 Rh1BG216800 Rh1CG230100 Rh1DG242900
rosa_wichuraiana Rw1G021320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 3 cut(s) 104, 350, 385
AciI CCGC 3 cut(s) 5, 452, 594
AclWI GGATC 3 cut(s) 75, 334, 347
AcoI YGGCCR 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 3 cut(s) 400, 406, 448
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
AgsI TTSAA 2 cut(s) 56, 510
AjnI CCWGG 2 cut(s) 39, 244
AluBI AGCT 2 cut(s) 164, 185
AluI AGCT 2 cut(s) 164, 185
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 3 cut(s) 75, 334, 347
AoxI GGCC 2 cut(s) 37, 531
AspLEI GCGC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 579
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 2 cut(s) 41, 246
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 41, 246, 410
BmiI GGNNCC 3 cut(s) 299, 341, 407
BmrFI CCNGG 3 cut(s) 41, 246, 410
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 410
BsaHI GRCGYC 3 cut(s) 400, 406, 448
BsaJI CCNNGG 4 cut(s) 61, 81, 245, 335
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
Bse118I RCCGGY 1 cut(s) 402
BseBI CCWGG 2 cut(s) 41, 246
BseDI CCNNGG 4 cut(s) 61, 81, 245, 335
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
BseMII CTCAG 2 cut(s) 203, 433
BseSI GKGCMC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 211, 574
BshFI GGCC 2 cut(s) 39, 533
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 3 cut(s) 195, 403, 409
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 2 cut(s) 39, 533
Bsp1286I GDGCHC 2 cut(s) 505, 579
Bsp143I GATC 2 cut(s) 67, 339
BspACI CCGC 3 cut(s) 5, 452, 594
BspANI GGCC 2 cut(s) 39, 533
BspCNI CTCAG 2 cut(s) 204, 432
BspLI GGNNCC 3 cut(s) 299, 341, 407
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 3 cut(s) 75, 334, 347
BspT107I GGYRCC 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 4 cut(s) 61, 81, 245, 335
BssMI GATC 2 cut(s) 67, 339
BssNI GRCGYC 3 cut(s) 400, 406, 448
BssT1I CCWWGG 3 cut(s) 61, 81, 335
Bst2UI CCWGG 2 cut(s) 41, 246
Bst4CI ACNGT 2 cut(s) 394, 529
BstACI GRCGYC 3 cut(s) 400, 406, 448
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 380, 404, 452
BstDEI CTNAG 3 cut(s) 165, 212, 419
BstF5I GGATG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 2 cut(s) 70, 342
BstMBI GATC 2 cut(s) 67, 339
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 2 cut(s) 41, 246
BstNSI RCATGY 2 cut(s) 367, 436
BstSCI CCNGG 3 cut(s) 39, 244, 408
BstSLI GKGCMC 1 cut(s) 579
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 2 cut(s) 39, 533
BtsCI GGATG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 380, 404, 452
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 402
CseI GACGC 3 cut(s) 317, 408, 456
CviAII CATG 3 cut(s) 251, 364, 433
CviJI RGCY 7 cut(s) 39, 87, 164, 185, 292, 533, 572
CviKI_1 RGCY 7 cut(s) 39, 87, 164, 185, 292, 533, 572
DdeI CTNAG 3 cut(s) 165, 212, 419
DinI GGCGCC 1 cut(s) 407
DpnI GATC 2 cut(s) 69, 341
DpnII GATC 2 cut(s) 67, 339
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 531
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 61, 81, 335
Eco57I CTGAAG 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 39, 244
EcoT14I CCWWGG 3 cut(s) 61, 81, 335
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
ErhI CCWWGG 3 cut(s) 61, 81, 335
FaeI CATG 3 cut(s) 254, 367, 436
FaiI YATR 9 cut(s) 119, 124, 126, 144, 252, 281, 365, 434, 494
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 250, 363, 432
FauI CCCGC 1 cut(s) 459
FauNDI CATATG 1 cut(s) 124
FokI GGATG 1 cut(s) 299
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 407
GsaI CCCAGC 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 2 cut(s) 39, 533
HapII CCGG 3 cut(s) 195, 403, 409
HgaI GACGC 3 cut(s) 317, 408, 456
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 3 cut(s) 400, 406, 448
Hin1II CATG 3 cut(s) 254, 367, 436
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 599
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 195, 403, 409
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 148, 332
Hpy188I TCNGA 3 cut(s) 76, 422, 500
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 148, 332
HpyAV CCTTC 3 cut(s) 29, 286, 516
HpyCH4III ACNGT 2 cut(s) 394, 529
HpyCH4V TGCA 6 cut(s) 128, 203, 228, 237, 436, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 165, 212, 419
Hsp92I GRCGYC 3 cut(s) 400, 406, 448
Hsp92II CATG 3 cut(s) 254, 367, 436
HspAI GCGC 1 cut(s) 406
KasI GGCGCC 1 cut(s) 405
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 67, 339
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 284
MalI GATC 2 cut(s) 69, 341
MboI GATC 2 cut(s) 67, 339
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 3 cut(s) 318, 348, 510
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 505, 579
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 5 cut(s) 27, 318, 348, 462, 510
MluNI TGGCCA 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 191, 419, 428, 512, 534
Mox20I TGGCCA 1 cut(s) 533
MreI CGCCGGCG 1 cut(s) 402
MroNI GCCGGC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 48, 147
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 3 cut(s) 195, 403, 409
MspR9I CCNGG 3 cut(s) 41, 246, 410
MunI CAATTG 3 cut(s) 318, 348, 510
MvaI CCWGG 2 cut(s) 41, 246
MwoI GCNNNNNNNGC 1 cut(s) 234
NaeI GCCGGC 1 cut(s) 404
NarI GGCGCC 1 cut(s) 406
NciI CCSGG 1 cut(s) 410
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 67, 339
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 3 cut(s) 254, 367, 436
NlaIV GGNNCC 3 cut(s) 299, 341, 407
NspI RCATGY 2 cut(s) 367, 436
PaqCI CACCTGC 1 cut(s) 599
PdiI GCCGGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 3 cut(s) 104, 350, 385
PluTI GGCGCC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 39, 244
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 39, 244
PspN4I GGNNCC 3 cut(s) 299, 341, 407
PsuI RGATCY 1 cut(s) 339
SaqAI TTAA 2 cut(s) 48, 147
Sau3AI GATC 2 cut(s) 67, 339
ScrFI CCNGG 3 cut(s) 41, 246, 410
SduI GDGCHC 2 cut(s) 505, 579
SetI ASST 9 cut(s) 83, 166, 187, 202, 213, 247, 337, 508, 593
SfaNI GCATC 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 407
SgrAI CRCCGGYG 1 cut(s) 402
Sse9I AATT 5 cut(s) 27, 318, 348, 462, 510
SsiI CCGC 3 cut(s) 5, 452, 594
SspDI GGCGCC 1 cut(s) 405
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 39, 244, 408
StyI CCWWGG 3 cut(s) 61, 81, 335
TaaI ACNGT 2 cut(s) 394, 529
TasI AATT 5 cut(s) 27, 318, 348, 462, 510
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 2 cut(s) 48, 147
Tru9I TTAA 2 cut(s) 48, 147
TspDTI ATGAA 2 cut(s) 268, 481
Van91I CCANNNNNTGG 3 cut(s) 104, 350, 385
XceI RCATGY 2 cut(s) 367, 436
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.