RchiOBHm_Chr1g0353041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018474
Physical Location & Seq
Reverse (-)
46366879 .. 46371170
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57869

Sequence Viewer

Length: 609 bp
ATGGTGGATAAGAACGTACCACTCTCAATTCCTGAAGGCCAAGAGATTAAGATTGAAGTCCAATGGACTCAATCTGAAACCTCGGGCTACTGCTTTCCACCAAGTGGTTTCTGTTCCATAACATATGCAGATGTCTTGCGTTATGTTAACGATGACAAGGAAGCCAAGATTTCCAACTATTCAGCTTTGCTGACTGGAGGTGTAAACAACCTGAGCAATCAATACTGCACTATTTGCAAAGAACCTGGGCATGATACTAATGTTTGTCCCCAACCCTTCATGCTAGATTGGCATGGGTTCGTGATCAATGGCATCCCAATTGTTCAGCGGCCGCCTTGGATCCCACCAATTGGTCTTCCACACATGCCAACTGTTCACCAGCACTGGGCAACTGTTAGACGCCGTCGCCGGGCAACCATTAGACGCGGACACATGCAAACTTTTGGACGCCCGTACATGCGAGTTTGTGCCCCTTCACTCCAGCGACCATTCATAGTCCGAGCACCTTCAACTGGCAGAGGCAGGACTGTGGCCAATAGGAGGCAACCAGAGTGCAGTCGTTGTGGCAGGGCTGGGCACAATATTCGCACCTGCGGTGAATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

202

Amino Acids

22.78

Weight (kDa)

9.55

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018474)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13520
rosa_chinensis RchiOBHm_Chr1g0353041
rosa_laevigata RLG00000028295
rosa_roxburghii Rroxscaffold_4G00302150
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG246500 Rh1BG216800 Rh1CG230100 Rh1DG242900
rosa_wichuraiana Rw1G021320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB7I CCANNNNNTGG 2 cut(s) 104, 350
AccII CGCG 1 cut(s) 426
AciI CCGC 4 cut(s) 328, 332, 426, 594
AclWI GGATC 2 cut(s) 334, 347
AcoI YGGCCR 2 cut(s) 329, 531
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 2 cut(s) 400, 448
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 18, 455
AfiI CCNNNNNNNGG 6 cut(s) 104, 350, 385, 409, 512, 540
AgsI TTSAA 2 cut(s) 56, 510
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 2 cut(s) 334, 347
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 3 cut(s) 37, 329, 531
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 368, 608
AvaI CYCGRG 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 472, 579
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 505
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 303
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 2 cut(s) 329, 332
BlsI GCNGC 2 cut(s) 330, 333
Bme1390I CCNGG 2 cut(s) 246, 410
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 2 cut(s) 246, 410
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 2 cut(s) 216, 464
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 410
BsaHI GRCGYC 2 cut(s) 400, 448
BsaJI CCNNGG 3 cut(s) 81, 245, 335
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 350, 385, 409, 512, 540
Bse1I ACTGG 3 cut(s) 199, 389, 517
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 3 cut(s) 81, 245, 335
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 6 cut(s) 104, 350, 385, 409, 512, 540
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 3 cut(s) 199, 389, 517
BseSI GKGCMC 2 cut(s) 472, 579
BseX3I CGGCCG 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 211, 574
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 39, 331, 533
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 6 cut(s) 104, 350, 385, 409, 512, 540
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 3 cut(s) 39, 331, 533
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 3 cut(s) 472, 505, 579
Bsp143I GATC 2 cut(s) 303, 339
BspACI CCGC 4 cut(s) 328, 332, 426, 594
BspANI GGCC 3 cut(s) 39, 331, 533
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 334, 347
BsrI ACTGG 3 cut(s) 199, 389, 517
BssECI CCNNGG 3 cut(s) 81, 245, 335
BssMI GATC 2 cut(s) 303, 339
BssNI GRCGYC 2 cut(s) 400, 448
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 373, 394, 529
BstACI GRCGYC 2 cut(s) 400, 448
BstAPI GCANNNNNTGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 2 cut(s) 306, 342
BstMBI GATC 2 cut(s) 303, 339
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 234, 289
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 3 cut(s) 367, 436, 460
BstSCI CCNGG 2 cut(s) 244, 408
BstSLI GKGCMC 2 cut(s) 472, 579
BstUI CGCG 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BstZI CGGCCG 1 cut(s) 329
BsuRI GGCC 3 cut(s) 39, 331, 533
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 382
BveI ACCTGC 1 cut(s) 599
CciNI GCGGCCGC 1 cut(s) 329
CseI GACGC 3 cut(s) 408, 432, 456
Csp6I GTAC 2 cut(s) 17, 454
CviAII CATG 6 cut(s) 251, 280, 293, 364, 433, 457
CviJI RGCY 7 cut(s) 39, 87, 164, 185, 331, 533, 572
CviKI_1 RGCY 7 cut(s) 39, 87, 164, 185, 331, 533, 572
CviQI GTAC 2 cut(s) 17, 454
DdeI CTNAG 1 cut(s) 212
DpnI GATC 2 cut(s) 305, 341
DpnII GATC 2 cut(s) 303, 339
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 329, 531
EagI CGGCCG 1 cut(s) 329
EclXI CGGCCG 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 6 cut(s) 254, 283, 296, 367, 436, 460
FaqI GGGAC 1 cut(s) 252
FatI CATG 6 cut(s) 250, 279, 292, 363, 432, 456
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 329, 332
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 329, 332
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 329, 332
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 2 cut(s) 216, 464
HaeIII GGCC 3 cut(s) 39, 331, 533
HapII CCGG 1 cut(s) 409
HgaI GACGC 3 cut(s) 408, 432, 456
Hin1I GRCGYC 2 cut(s) 400, 448
Hin1II CATG 6 cut(s) 254, 283, 296, 367, 436, 460
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 67, 599
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 409
HphI GGTGA 2 cut(s) 368, 608
Hpy166II GTNNAC 3 cut(s) 148, 205, 376
Hpy188I TCNGA 2 cut(s) 76, 500
Hpy188III TCNNGA 2 cut(s) 32, 301
Hpy8I GTNNAC 3 cut(s) 148, 205, 376
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 4 cut(s) 29, 286, 483, 516
HpyCH4III ACNGT 3 cut(s) 373, 394, 529
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 128, 228, 237, 436, 555
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 289
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 400, 448
Hsp92II CATG 6 cut(s) 254, 283, 296, 367, 436, 460
Ksp22I TGATCA 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 303, 339
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 305, 341
MboI GATC 2 cut(s) 303, 339
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 2 cut(s) 318, 348
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 3 cut(s) 472, 505, 579
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 3 cut(s) 27, 318, 348
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 91, 191, 512, 534
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 48, 147
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 246, 410
MunI CAATTG 2 cut(s) 318, 348
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 234, 289
NciI CCSGG 1 cut(s) 410
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 303, 339
NlaIII CATG 6 cut(s) 254, 283, 296, 367, 436, 460
NlaIV GGNNCC 1 cut(s) 341
NotI GCGGCCGC 1 cut(s) 329
NspI RCATGY 3 cut(s) 367, 436, 460
PaqCI CACCTGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 599
PflFI GACNNNGTC 1 cut(s) 402
PflMI CCANNNNNTGG 2 cut(s) 104, 350
PkrI GCNGC 2 cut(s) 330, 333
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 339
PsyI GACNNNGTC 1 cut(s) 402
RsaI GTAC 2 cut(s) 18, 455
RsaNI GTAC 2 cut(s) 17, 454
SaqAI TTAA 2 cut(s) 48, 147
SatI GCNGC 2 cut(s) 329, 332
Sau3AI GATC 2 cut(s) 303, 339
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 246, 410
SduI GDGCHC 3 cut(s) 472, 505, 579
SetI ASST 8 cut(s) 18, 83, 187, 202, 213, 247, 508, 593
SfaNI GCATC 1 cut(s) 321
Sse9I AATT 3 cut(s) 27, 318, 348
SsiI CCGC 4 cut(s) 328, 332, 426, 594
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 244, 408
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 3 cut(s) 373, 394, 529
TaiI ACGT 1 cut(s) 18
TasI AATT 3 cut(s) 27, 318, 348
TauI GCSGC 2 cut(s) 331, 334
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 2 cut(s) 48, 147
Tru9I TTAA 2 cut(s) 48, 147
TscAI CASTG 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 268, 481
TspRI CASTG 1 cut(s) 389
Tth111I GACNNNGTC 1 cut(s) 402
Van91I CCANNNNNTGG 2 cut(s) 104, 350
XceI RCATGY 3 cut(s) 367, 436, 460
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.