Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

33575868 .. 33581703

Gene Structure 5836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAGGAGTCTCCGAACCTCAAACCTCTCCATCACCATCACTCTCTCCTCCTCTCCTTAATCCATTCCCTCCACATGGCCACGTGTCTCCCCTTCCGCTCCATCCCCTTCAAACCCAACACCACCTCCTCCTCCTCCCGCCCCGCTAAAATCACCTGCTCCTCCGTCACCGCCCAATCCCGCCTCGCCAAGCAAGACCTCCTCGCCCTCATCGCCGACCAGGACCGCGGCCTCAAGACCCAGACCGACCCCACCAAACGCGCCTCCATCATCAAGGCCATCGACGCCCTGGCCGATCTCGGCAACGGTACCGTCACCACCGGCGGCGACCTCTCCGCCACGTGGAGGCTGCTGTGGACGACGGAGAAGGAGCAGCTCTTCATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGACGTTTTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAATGTCATCACTTTCCCTCCCGATGGAGTCTTCTTTGTTCGCTCCACCATCGAAGTCGCTTCGCCGCAGAGAGTGAATTTTAGGTTTACGAGTGCGGTTCTAAGAGGGAAGAGCTGGGAGTTTCCATTGCCGCCGTTCGGCCAGGGCTGGTTTGAAACTGTATACCTTGATGACGAGATTCGGGTTGTGAAGGATATCAGAGAAGACTATTTGGTTGTAGACCGTGCTCCCTATGCTTGGACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

8.55

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	63 - 227	1.1e-34	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	2 cut(s)	164, 421
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	2 cut(s)	624, 681
AccII	CGCG	5 cut(s)	228, 261, 395, 412, 414
AcoI	YGGCCR	3 cut(s)	78, 291, 601
AcsI	RAATTY	1 cut(s)	538
AcvI	CACGTG	2 cut(s)	84, 342
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	6 cut(s)	76, 342, 345, 485, 599, 699
AflIII	ACRYGT	2 cut(s)	83, 393
AgsI	TTSAA	2 cut(s)	112, 617
AjnI	CCWGG	3 cut(s)	219, 288, 603
AluBI	AGCT	2 cut(s)	376, 576
AluI	AGCT	2 cut(s)	376, 576
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	2 cut(s)	15, 92
AoxI	GGCC	5 cut(s)	78, 229, 276, 291, 601
ApeKI	GCWGC	2 cut(s)	349, 373
ApoI	RAATTY	1 cut(s)	538
Asp718I	GGTACC	1 cut(s)	308
AspLEI	GCGC	3 cut(s)	263, 414, 416
AspS9I	GGNCC	2 cut(s)	223, 454
AsuHPI	GGTGA	4 cut(s)	26, 145, 160, 307
AvaII	GGWCC	2 cut(s)	223, 454
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	308
BbrPI	CACGTG	2 cut(s)	84, 342
BbsI	GAAGAC	2 cut(s)	484, 672
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	2 cut(s)	336, 385
BccI	CCATC	7 cut(s)	39, 45, 110, 275, 287, 479, 518
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	3 cut(s)	221, 290, 605
BcoDI	GTCTC	2 cut(s)	15, 92
BfuAI	ACCTGC	2 cut(s)	164, 421
BisI	GCNGC	6 cut(s)	229, 325, 350, 374, 527, 593
BlsI	GCNGC	6 cut(s)	230, 326, 351, 375, 528, 594
Bme1390I	CCNGG	3 cut(s)	221, 290, 605
Bme18I	GGWCC	2 cut(s)	223, 454
BmgT120I	GGNCC	2 cut(s)	223, 454
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	221, 290, 605
BpiI	GAAGAC	2 cut(s)	484, 672
BpuEI	CTTGAG	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	2 cut(s)	84, 342
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	226, 288, 604
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 463, 493
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 342, 345, 485, 599, 699
Bse118I	RCCGGY	2 cut(s)	320, 416
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	3 cut(s)	221, 290, 605
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	226, 288, 604
BseGI	GGATG	2 cut(s)	102, 384
BseLI	CCNNNNNNNGG	6 cut(s)	76, 342, 345, 485, 599, 699
BseMI	GCAATG	1 cut(s)	587
BsePI	GCGCGC	1 cut(s)	412
BseRI	GAGGAG	7 cut(s)	38, 41, 118, 121, 124, 151, 191
BseXI	GCAGC	2 cut(s)	336, 385
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	5 cut(s)	228, 261, 395, 412, 414
BshFI	GGCC	5 cut(s)	80, 231, 278, 293, 603
BshNI	GGYRCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	3 cut(s)	321, 417, 448
BslI	CCNNNNNNNGG	6 cut(s)	76, 342, 345, 485, 599, 699
BsmAI	GTCTC	2 cut(s)	15, 92
BsnI	GGCC	5 cut(s)	80, 231, 278, 293, 603
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	5 cut(s)	80, 231, 278, 293, 603
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	5 cut(s)	228, 261, 395, 412, 414
BspLI	GGNNCC	1 cut(s)	310
BspMI	ACCTGC	2 cut(s)	164, 421
BspQI	GCTCTTC	2 cut(s)	383, 566
BspT107I	GGYRCC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	320, 416
BssAI	RCCGGY	2 cut(s)	320, 416
BssECI	CCNNGG	3 cut(s)	226, 288, 604
BssHII	GCGCGC	1 cut(s)	412
BssMI	GATC	1 cut(s)	295
BssNAI	GTATAC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	285
Bst1107I	GTATAC	1 cut(s)	625
Bst2UI	CCWGG	3 cut(s)	221, 290, 605
Bst4CI	ACNGT	4 cut(s)	308, 313, 622, 686
Bst6I	CTCTTC	2 cut(s)	383, 566
BstACI	GRCGYC	1 cut(s)	285
BstBAI	YACGTR	2 cut(s)	84, 342
BstC8I	GCNNGC	3 cut(s)	410, 414, 418
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	102, 384
BstFNI	CGCG	5 cut(s)	228, 261, 395, 412, 414
BstHHI	GCGC	3 cut(s)	263, 414, 416
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	15, 92
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 284, 695
BstNI	CCWGG	3 cut(s)	221, 290, 605
BstSCI	CCNGG	3 cut(s)	219, 288, 603
BstUI	CGCG	5 cut(s)	228, 261, 395, 412, 414
BstV1I	GCAGC	2 cut(s)	336, 385
BstV2I	GAAGAC	2 cut(s)	484, 672
BstZ17I	GTATAC	1 cut(s)	625
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	80, 231, 278, 293, 603
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	102, 384
BveI	ACCTGC	2 cut(s)	164, 421
Cac8I	GCNNGC	3 cut(s)	410, 414, 418
CfoI	GCGC	3 cut(s)	263, 414, 416
Cfr10I	RCCGGY	2 cut(s)	320, 416
Cfr13I	GGNCC	2 cut(s)	223, 454
Cfr42I	CCGCGG	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	2 cut(s)	293, 384
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	80, 231, 278, 293, 349, 376, 576, 603, 609
CviKI_1	RGCY	9 cut(s)	80, 231, 278, 293, 349, 376, 576, 603, 609
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	3 cut(s)	78, 291, 601
Eam1104I	CTCTTC	2 cut(s)	383, 566
EarI	CTCTTC	2 cut(s)	383, 566
EciI	GGCGGA	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	223, 454
Eco72I	CACGTG	2 cut(s)	84, 342
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	219, 288, 603
EcoRV	GATATC	1 cut(s)	658
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 625, 696
FatI	CATG	1 cut(s)	75
FauI	CCCGC	3 cut(s)	146, 151, 188
FblI	GTMKAC	2 cut(s)	624, 681
Fnu4HI	GCNGC	6 cut(s)	229, 325, 350, 374, 527, 593
FokI	GGATG	2 cut(s)	89, 371
Fsp4HI	GCNGC	6 cut(s)	229, 325, 350, 374, 527, 593
GlaI	GCGC	3 cut(s)	262, 413, 415
GluI	GCNGC	6 cut(s)	229, 325, 350, 374, 527, 593
GsaI	CCCAGC	1 cut(s)	580
HaeIII	GGCC	5 cut(s)	80, 231, 278, 293, 603
HapII	CCGG	3 cut(s)	321, 417, 448
HgaI	GACGC	2 cut(s)	293, 384
HhaI	GCGC	3 cut(s)	263, 414, 416
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	3 cut(s)	261, 412, 414
HinP1I	GCGC	3 cut(s)	261, 412, 414
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	8, 489, 640
HpaII	CCGG	3 cut(s)	321, 417, 448
HphI	GGTGA	4 cut(s)	26, 145, 160, 307
Hpy166II	GTNNAC	5 cut(s)	357, 445, 549, 625, 682
Hpy188I	TCNGA	2 cut(s)	15, 662
Hpy188III	TCNNGA	3 cut(s)	235, 388, 482
Hpy8I	GTNNAC	5 cut(s)	357, 445, 549, 625, 682
Hpy99I	CGWCG	3 cut(s)	287, 364, 425
HpyAV	CCTTC	5 cut(s)	103, 118, 361, 445, 646
HpyCH4III	ACNGT	4 cut(s)	308, 313, 622, 686
HpyCH4IV	ACGT	3 cut(s)	83, 341, 423
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 284, 695
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	3 cut(s)	83, 341, 423
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	3 cut(s)	261, 412, 414
KpnI	GGTACC	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	2 cut(s)	383, 566
LmnI	GCTCC	5 cut(s)	104, 164, 370, 509, 694
Lsp1109I	GCAGC	2 cut(s)	336, 385
MaeII	ACGT	3 cut(s)	83, 341, 423
MaeIII	GTNAC	2 cut(s)	166, 313
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	1 cut(s)	295
MboII	GAAGA	4 cut(s)	370, 484, 583, 677
MhlI	GDGCHC	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	538
MluI	ACGCGT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	17, 498
Mox20I	TGGCCA	1 cut(s)	80
MreI	CGCCGGCG	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	321, 417, 448
MspR9I	CCNGG	3 cut(s)	221, 290, 605
MvaI	CCWGG	3 cut(s)	221, 290, 605
MvnI	CGCG	5 cut(s)	228, 261, 395, 412, 414
MwoI	GCNNNNNNNGC	3 cut(s)	212, 284, 695
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	166, 313
PaqCI	CACCTGC	1 cut(s)	164
PauI	GCGCGC	1 cut(s)	412
PciSI	GCTCTTC	2 cut(s)	383, 566
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	640
PkrI	GCNGC	6 cut(s)	230, 326, 351, 375, 528, 594
PleI	GAGTC	2 cut(s)	16, 497
PmaCI	CACGTG	2 cut(s)	84, 342
PmlI	CACGTG	2 cut(s)	84, 342
PpsI	GAGTC	2 cut(s)	16, 497
Ppu21I	YACGTR	2 cut(s)	84, 342
PpuMI	RGGWCCY	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	3 cut(s)	219, 288, 603
PspCI	CACGTG	2 cut(s)	84, 342
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	3 cut(s)	219, 288, 603
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	223, 454
PspPPI	RGGWCCY	1 cut(s)	454
PteI	GCGCGC	1 cut(s)	412
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	229
SapI	GCTCTTC	2 cut(s)	383, 566
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	6 cut(s)	229, 325, 350, 374, 527, 593
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	223, 454
SchI	GAGTC	2 cut(s)	17, 498
ScrFI	CCNGG	3 cut(s)	221, 290, 605
SduI	GDGCHC	1 cut(s)	691
Sfr303I	CCGCGG	1 cut(s)	229
SgrAI	CRCCGGYG	2 cut(s)	320, 416
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	2 cut(s)	223, 454
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	219, 288, 603
TaaI	ACNGT	4 cut(s)	308, 313, 622, 686
TaiI	ACGT	3 cut(s)	86, 344, 426
TaqI	TCGA	3 cut(s)	282, 438, 513
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	538
TauI	GCSGC	4 cut(s)	231, 327, 529, 595
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	2 cut(s)	166, 313
TseI	GCWGC	2 cut(s)	349, 373
Tsp45I	GTSAC	2 cut(s)	166, 313
TspDTI	ATGAA	2 cut(s)	17, 370
TspGWI	ACGGA	3 cut(s)	154, 377, 388
VpaK11BI	GGWCC	2 cut(s)	223, 454
XapI	RAATTY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	2 cut(s)	624, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.