Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

45039861 .. 45040238

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTATTGCCAAGGCGTGGATGTGTATGGTCCATTTTGGGATCACATGTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTATATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGAAATTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCACTATGATGGAGCAGAGAATGTCCAAAGTCATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

125

Amino Acids

14.84

Weight (kDa)

5.77

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	2 - 125	4.5e-30	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	2 cut(s)	56, 104
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	73, 100, 139, 203, 277
AluBI	AGCT	3 cut(s)	69, 217, 308
AluI	AGCT	3 cut(s)	69, 217, 308
Alw26I	GTCTC	2 cut(s)	70, 224
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	116, 340
BcoDI	GTCTC	2 cut(s)	70, 224
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	309
BsaI	GGTCTC	2 cut(s)	70, 224
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	62, 265
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	165, 300
BseNI	ACTGG	2 cut(s)	62, 265
BseRI	GAGGAG	3 cut(s)	191, 194, 197
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	70, 224
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	70, 224
Bsp143I	GATC	2 cut(s)	40, 249
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	166, 301
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	2 cut(s)	70, 224
BsrI	ACTGG	2 cut(s)	62, 265
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	40, 249
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	174, 309
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	43, 252
BstMAI	GTCTC	2 cut(s)	70, 224
BstMBI	GATC	2 cut(s)	40, 249
BstNSI	RCATGY	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	2 cut(s)	157, 346
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	55, 103
CviAII	CATG	4 cut(s)	46, 112, 235, 280
CviJI	RGCY	4 cut(s)	69, 149, 217, 308
CviKI_1	RGCY	4 cut(s)	69, 149, 217, 308
CviQI	GTAC	2 cut(s)	55, 103
DdeI	CTNAG	2 cut(s)	174, 309
DpnI	GATC	2 cut(s)	42, 251
DpnII	GATC	2 cut(s)	40, 249
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	2 cut(s)	70, 224
Eco47I	GGWCC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	49, 115, 238, 283
FaiI	YATR	9 cut(s)	27, 47, 113, 130, 209, 236, 281, 344, 371
FatI	CATG	4 cut(s)	45, 111, 234, 279
FokI	GGATG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	49, 115, 238, 283
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HpaI	GTTAAC	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	97, 274
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	174, 309
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	49, 115, 238, 283
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	40, 249
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	3 cut(s)	43, 246, 308
MaeII	ACGT	1 cut(s)	266
MalI	GATC	2 cut(s)	42, 251
MboI	GATC	2 cut(s)	40, 249
MboII	GAAGA	4 cut(s)	85, 127, 215, 250
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	149
MnlI	CCTC	5 cut(s)	100, 169, 172, 175, 304
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	149
NdeII	GATC	2 cut(s)	40, 249
NlaIII	CATG	4 cut(s)	49, 115, 238, 283
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	16
PscI	ACATGT	1 cut(s)	45
Psp1406I	AACGTT	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	56, 104
RsaNI	GTAC	2 cut(s)	55, 103
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	40, 249
Sau96I	GGNCC	1 cut(s)	29
SetI	ASST	7 cut(s)	71, 82, 219, 269, 297, 310, 315
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	269
TasI	AATT	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	128, 251
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	29
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.