Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

16231070 .. 16232029

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCATCACTGAAAACCCACCATTAGATCATGAAGAGGAAAAACTCAGTGATGAGTGCAAGAAACTCCTTCTTTCTCTCCCAAAAGAGAAAGGTTGGAGAACCCTTCACCTCTTTCAATTCCAAGGCTTCTGCATTCCAAAATCAGGCACCACATGGTTAAAAGCCTTGACTTTCGCTATTGTAAACCGACGCCATTTCGCAGTCTCAAAGTCCCATCCTTTACTCACTTCCAATCCTCATGATGTTGTGCCTTTCCTTGAGTACAAGCTCTATGCAAACAACCCACTTCCTGACCTCTCCAAATTTCCTGAGCCAAGACTGTTTGGGACACACATTCCTTATCCTTCTCTGAGTACAATAAAAAAGTCCAACTGTAAGATTGTTTACATTTGCAGAAACCCATTTGATACATTTGTGTCCTCTTGGCATTTCATTAACAAAGTGAAGCCACAATCTCAAGCTCCGATCTCTCTCGATGAGGCCTTTGATATGTATTGCAAGGGCATAGTTGGGTTTGGTCCGCTTTGGGAGCACATGTTGGGGTACTGGAAAGAGAGCTTGAACAGACCTGACAATGTTTTGTGTTTGAAGTATGAGGACATGAAGGAAAATGGTGTGTTTCAGTTAAAGAAATTGGCAAATTTTCTGGGGTTCCTTTTTAGTTTGGAGGAGGAGAGAGGTGGTGAGATTGAGGAAATAGCAAAGCTTTGTGGTTTTCAGAACATGAAGAAATTGGAGGTCAATAGAAGTGGCAAGTCTATTAAGAACTTTGAGAATAAGAACCTATTTAGAAAAGCCGAGGTGGGGGATTGGATGAACTATTTGACCCCTAATATGGTTGAAAGGTTGTCCAAAGTCCTTGAAGAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

292

Amino Acids

33.85

Weight (kDa)

8.68

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	46 - 292	3.3e-64	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	305, 643
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	3 cut(s)	266, 358, 548
AfiI	CCNNNNNNNGG	3 cut(s)	146, 807, 838
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	5 cut(s)	119, 565, 592, 845, 866
AluBI	AGCT	4 cut(s)	271, 464, 561, 709
AluI	AGCT	4 cut(s)	271, 464, 561, 709
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	3, 483
ApoI	RAATTY	2 cut(s)	305, 643
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	101, 698
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	537
BccI	CCATC	2 cut(s)	14, 225
BcoDI	GTCTC	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	151, 656
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	281, 444
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	124, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 807, 838
Bse1I	ACTGG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	124, 801
BseGI	GGATG	2 cut(s)	217, 822
BseLI	CCNNNNNNNGG	3 cut(s)	146, 807, 838
BseMII	CTCAG	3 cut(s)	61, 303, 344
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	686, 689
BshFI	GGCC	2 cut(s)	5, 485
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	537
BslFI	GGGAC	2 cut(s)	199, 343
BslI	CCNNNNNNNGG	3 cut(s)	146, 807, 838
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	199, 343
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	5, 485
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	28, 468
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	2 cut(s)	5, 485
BspCNI	CTCAG	3 cut(s)	60, 304, 345
BspHI	TCATGA	2 cut(s)	31, 241
BspLI	GGNNCC	2 cut(s)	151, 656
BspT107I	GGYRCC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	124, 801
BssMI	GATC	2 cut(s)	28, 468
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	324, 377
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	47, 312, 353
BstF5I	GGATG	2 cut(s)	217, 822
BstKTI	GATC	2 cut(s)	31, 471
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	28, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	5, 485
BtsCI	GGATG	2 cut(s)	217, 822
BtsIMutI	CAGTG	2 cut(s)	9, 55
CciI	TCATGA	2 cut(s)	31, 241
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	265, 357, 547
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	6 cut(s)	32, 156, 242, 538, 604, 727
CviQI	GTAC	3 cut(s)	265, 357, 547
DdeI	CTNAG	3 cut(s)	47, 312, 353
DpnI	GATC	2 cut(s)	30, 470
DpnII	GATC	2 cut(s)	28, 468
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	6 cut(s)	35, 159, 245, 541, 607, 730
FaqI	GGGAC	2 cut(s)	199, 343
FatI	CATG	6 cut(s)	31, 155, 241, 537, 603, 726
FokI	GGATG	2 cut(s)	204, 829
HaeIII	GGCC	2 cut(s)	5, 485
HgaI	GACGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	35, 159, 245, 541, 607, 730
HindIII	AAGCTT	1 cut(s)	707
HphI	GGTGA	2 cut(s)	101, 698
Hpy166II	GTNNAC	2 cut(s)	187, 388
Hpy188I	TCNGA	3 cut(s)	354, 468, 723
Hpy188III	TCNNGA	5 cut(s)	32, 242, 293, 311, 476
Hpy8I	GTNNAC	2 cut(s)	187, 388
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	4 cut(s)	80, 116, 357, 601
HpyCH4III	ACNGT	2 cut(s)	324, 377
HpyCH4V	TGCA	5 cut(s)	60, 135, 278, 396, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	3 cut(s)	47, 312, 353
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	6 cut(s)	35, 159, 245, 541, 607, 730
Kzo9I	GATC	2 cut(s)	28, 468
LmnI	GCTCC	2 cut(s)	469, 532
LpnPI	CCDG	6 cut(s)	132, 306, 324, 535, 585, 635
MalI	GATC	2 cut(s)	30, 470
MboI	GATC	2 cut(s)	28, 468
MboII	GAAGA	3 cut(s)	47, 742, 878
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	119, 305, 635, 643, 734
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	77, 396
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	161, 438, 629, 765
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeII	GATC	2 cut(s)	28, 468
NlaIII	CATG	6 cut(s)	35, 159, 245, 541, 607, 730
NlaIV	GGNNCC	2 cut(s)	151, 656
NmeAIII	GCCGAG	1 cut(s)	826
NspI	RCATGY	1 cut(s)	541
PagI	TCATGA	2 cut(s)	31, 241
PceI	AGGCCT	1 cut(s)	485
PciI	ACATGT	1 cut(s)	537
PctI	GAATGC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	151, 656
PspPI	GGNCC	1 cut(s)	521
RsaI	GTAC	3 cut(s)	266, 358, 548
RsaNI	GTAC	3 cut(s)	265, 357, 547
SaqAI	TTAA	4 cut(s)	161, 438, 629, 765
Sau3AI	GATC	2 cut(s)	28, 468
Sau96I	GGNCC	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	537
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	260, 459
SmoI	CTYRAG	2 cut(s)	260, 459
Sse9I	AATT	5 cut(s)	119, 305, 635, 643, 734
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	324, 377
TaqI	TCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	119, 305, 635, 643, 734
TatI	WGTACW	2 cut(s)	264, 356
Tru1I	TTAA	4 cut(s)	161, 438, 629, 765
Tru9I	TTAA	4 cut(s)	161, 438, 629, 765
TscAI	CASTG	2 cut(s)	16, 55
TspDTI	ATGAA	5 cut(s)	48, 424, 620, 743, 833
TspRI	CASTG	2 cut(s)	16, 55
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	305, 643
XceI	RCATGY	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.