Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

52233167 .. 52233502

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG353100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGAAAGATGGTGTATATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGAAGTTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGGAGCAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTAGTTCAGGCTTGACTTTCAAAGGGACTCCCGAGCTAGCAGATCATGTCCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

5.72

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	1 - 94	2.7e-17	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	28, 92, 166, 295
AluBI	AGCT	3 cut(s)	106, 197, 310
AluI	AGCT	3 cut(s)	106, 197, 310
Alw26I	GTCTC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	185
AsuNHI	GCTAGC	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	198
BccI	CCATC	2 cut(s)	5, 229
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	311, 334
BmeT110I	CYCGRG	1 cut(s)	305
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	54, 189
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	3 cut(s)	80, 83, 86
BshFI	GGCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	138, 316
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	55, 190
BspOI	GCTAGC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	138, 316
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	63, 198
BstKTI	GATC	2 cut(s)	141, 319
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	138, 316
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	312
CviAII	CATG	3 cut(s)	124, 169, 320
CviJI	RGCY	5 cut(s)	38, 106, 197, 285, 310
CviKI_1	RGCY	5 cut(s)	38, 106, 197, 285, 310
DdeI	CTNAG	2 cut(s)	63, 198
DpnI	GATC	2 cut(s)	140, 318
DpnII	GATC	2 cut(s)	138, 316
EaeI	YGGCCR	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	305
FaeI	CATG	3 cut(s)	127, 172, 323
FaiI	YATR	7 cut(s)	19, 98, 125, 170, 233, 260, 321
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	123, 168, 319
FspBI	CTAG	2 cut(s)	311, 334
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	127, 172, 323
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	301
HpaI	GTTAAC	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	163, 305
Hpy8I	GTNNAC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	63, 198
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	127, 172, 323
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	138, 316
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	135, 197, 267
MaeI	CTAG	2 cut(s)	311, 334
MaeII	ACGT	1 cut(s)	155
MalI	GATC	2 cut(s)	140, 318
MboI	GATC	2 cut(s)	138, 316
MboII	GAAGA	4 cut(s)	16, 104, 139, 275
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	58, 61, 64, 193
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	38
NdeII	GATC	2 cut(s)	138, 316
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	127, 172, 323
PdmI	GAANNNNTTC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	138, 316
SchI	GAGTC	1 cut(s)	295
SetI	ASST	6 cut(s)	108, 158, 186, 199, 204, 312
SspMI	CTAG	2 cut(s)	311, 334
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	17, 140
TspRI	CASTG	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	2 cut(s)	311, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.