Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

46208500 .. 46209795

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACTGAAAATCAACCGGCTGACGATGAAGAAAAATACCTTGGTAATGAGTGCAAGGAACTCCTCCTTTCTCTCCCCAAAAAAAGAGGCTGGAGAACCCTCCACCTATATCAATTCCAAGGCTTTTGGTGGGAAACACAAGCAATCGAAGCCGTAATCTCTTTCCAAAAGCACTTCCAAGCTAGGGACTCCGACATAGTTGTGGCCACCCTACCCAAATCCGGAACAACATGGTTGAAAGCCTTGACTTTTGCTGTTGTGAATCGACACCGTTTTGCAATAAAGACCCATCCCTTGCTCACTTCCAACCCTCATGATCTTGTGCCATACTTTGAGTTACATCTCTATGCAAACAACCAGCTGGTTCCTGATCTCTCCAAGTTTCCTGAGCCAAGACTCTTTGGGACTCATATTCCTTTTCCTTCTTTGGGTACAATTACAGAGTCCAACTGTAAGATCGTTTATGTTTGCAGAAACCCATTTGACACATTTATTTCTGCTTGGCATTTCGCTAACAAAATCAAGCCACAACATCAAGCTCCACTGTCGCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGAGTCCGTATGGTCCATTTTGGGATCATGTGTTGGAGTACTGGAAAGAGAGCTTGAAAAGACCTCAGAATGTGTTATTCTTCAAGTACGAGGACATGAAGGAAGATGTTGTGTTGCACTTGAAAAGATTGGCCGAGTTTTTAGACTACCCTTTCACTATGGAGGAGGAGAGAAATGGTGTGATTGAAGATATAGCAAAGCTCTGTTCTTTTGAGTCCTTGAAGGCTTTGGAGGTCAACAAAACTGGCATGATTCGCATGTCGAAGTTTGAGAATAAGGTCTTTTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTAAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAAATTGGGTGGTTCAGGCTTGACATTCAAAGTGATTCCAGATGTAGCAAATCCTGTCCAGCAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

338

Amino Acids

39.41

Weight (kDa)

6.28

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	63 - 322	1.8e-70	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	221
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	2 cut(s)	204, 714
AfaI	GTAC	3 cut(s)	433, 623, 671
AfiI	CCNNNNNNNGG	4 cut(s)	184, 221, 428, 916
AgsI	TTSAA	7 cut(s)	238, 640, 667, 706, 770, 805, 976
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	6 cut(s)	182, 361, 539, 636, 784, 878
AluI	AGCT	6 cut(s)	182, 361, 539, 636, 784, 878
AlwI	GGATC	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	3 cut(s)	204, 558, 714
AspS9I	GGNCC	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	596
BalI	TGGCCA	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	879
BccI	CCATC	2 cut(s)	297, 910
BceAI	ACGGC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	2 cut(s)	387, 879
BsaJI	CCNNGG	3 cut(s)	40, 118, 577
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	4 cut(s)	879, 909, 914, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 221, 428, 916
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	629, 832
BseAI	TCCGGA	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	40, 118, 577
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	4 cut(s)	184, 221, 428, 916
BseMII	CTCAG	3 cut(s)	378, 662, 870
BseNI	ACTGG	2 cut(s)	629, 832
BseRI	GAGGAG	4 cut(s)	53, 761, 764, 935
BshFI	GGCC	3 cut(s)	206, 560, 716
BsiSI	CCGG	2 cut(s)	17, 222
BslFI	GGGAC	2 cut(s)	200, 418
BslI	CCNNNNNNNGG	4 cut(s)	184, 221, 428, 916
BsmFI	GGGAC	2 cut(s)	200, 418
BsnI	GGCC	3 cut(s)	206, 560, 716
Bsp13I	TCCGGA	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	316, 370, 456, 607
BspANI	GGCC	3 cut(s)	206, 560, 716
BspCNI	CTCAG	3 cut(s)	379, 661, 871
BspEI	TCCGGA	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	629, 832
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	40, 118, 577
BssMI	GATC	4 cut(s)	316, 370, 456, 607
BssT1I	CCWWGG	3 cut(s)	40, 118, 577
Bst4CI	ACNGT	3 cut(s)	272, 452, 546
BstDEI	CTNAG	4 cut(s)	387, 648, 879, 912
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	319, 373, 459, 610
BstMBI	GATC	4 cut(s)	316, 370, 456, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 837
BstNSI	RCATGY	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	206, 560, 716
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	3 cut(s)	432, 622, 670
CviAII	CATG	7 cut(s)	231, 314, 583, 611, 679, 832, 841
CviQI	GTAC	3 cut(s)	432, 622, 670
DdeI	CTNAG	4 cut(s)	387, 648, 879, 912
DpnI	GATC	4 cut(s)	318, 372, 458, 609
DpnII	GATC	4 cut(s)	316, 370, 456, 607
EaeI	YGGCCR	2 cut(s)	204, 714
Eco130I	CCWWGG	3 cut(s)	40, 118, 577
Eco147I	AGGCCT	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	596
EcoT14I	CCWWGG	3 cut(s)	40, 118, 577
ErhI	CCWWGG	3 cut(s)	40, 118, 577
FaeI	CATG	7 cut(s)	234, 317, 586, 614, 682, 835, 844
FaqI	GGGAC	2 cut(s)	200, 418
FatI	CATG	7 cut(s)	230, 313, 582, 610, 678, 831, 840
FokI	GGATG	1 cut(s)	276
FspBI	CTAG	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	206, 560, 716
HapII	CCGG	2 cut(s)	17, 222
Hin1II	CATG	7 cut(s)	234, 317, 586, 614, 682, 835, 844
HincII	GTYRAC	2 cut(s)	820, 898
HindII	GTYRAC	2 cut(s)	820, 898
HinfI	GANTC	9 cut(s)	188, 262, 396, 406, 443, 586, 797, 835, 982
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	2 cut(s)	17, 222
Hpy166II	GTNNAC	2 cut(s)	820, 898
Hpy188I	TCNGA	3 cut(s)	193, 651, 872
Hpy188III	TCNNGA	5 cut(s)	222, 314, 368, 386, 986
Hpy8I	GTNNAC	2 cut(s)	820, 898
HpyAV	CCTTC	3 cut(s)	432, 676, 799
HpyCH4III	ACNGT	3 cut(s)	272, 452, 546
HpyCH4V	TGCA	5 cut(s)	54, 278, 350, 471, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 837
HpyF3I	CTNAG	4 cut(s)	387, 648, 879, 912
Hsp92II	CATG	7 cut(s)	234, 317, 586, 614, 682, 835, 844
Kpn2I	TCCGGA	1 cut(s)	221
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	316, 370, 456, 607
LmnI	GCTCC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	4 cut(s)	318, 372, 458, 609
MboI	GATC	4 cut(s)	316, 370, 456, 607
MboII	GAAGA	5 cut(s)	41, 655, 698, 782, 956
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	113, 435, 950, 1012
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	6 cut(s)	182, 390, 400, 452, 595, 806
MmeI	TCCRAC	4 cut(s)	216, 330, 471, 597
Mox20I	TGGCCA	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	2 cut(s)	200, 345
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	2 cut(s)	17, 222
MwoI	GCNNNNNNNGC	2 cut(s)	149, 837
NdeII	GATC	4 cut(s)	316, 370, 456, 607
NlaIII	CATG	7 cut(s)	234, 317, 586, 614, 682, 835, 844
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	742
NspI	RCATGY	1 cut(s)	844
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	262, 835, 982
PleI	GAGTC	6 cut(s)	182, 390, 400, 451, 594, 805
PpsI	GAGTC	6 cut(s)	182, 390, 400, 451, 594, 805
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	3 cut(s)	433, 623, 671
RsaNI	GTAC	3 cut(s)	432, 622, 670
RseI	CAYNNNNRTG	2 cut(s)	200, 345
SaqAI	TTAA	1 cut(s)	897
Sau3AI	GATC	4 cut(s)	316, 370, 456, 607
Sau96I	GGNCC	1 cut(s)	596
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	6 cut(s)	182, 390, 400, 452, 595, 806
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	2 cut(s)	200, 345
Sse9I	AATT	4 cut(s)	113, 435, 950, 1012
SseBI	AGGCCT	1 cut(s)	560
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	560
StyI	CCWWGG	3 cut(s)	40, 118, 577
TaaI	ACNGT	3 cut(s)	272, 452, 546
TaqI	TCGA	3 cut(s)	147, 265, 845
TasI	AATT	4 cut(s)	113, 435, 950, 1012
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	3 cut(s)	262, 835, 982
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TscAI	CASTG	1 cut(s)	549
TspDTI	ATGAA	2 cut(s)	42, 695
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	596
XceI	RCATGY	1 cut(s)	844
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.