Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000584.1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

106508 .. 107516

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000584.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgactgaaaatcagccggctggtgatggagaaacagacctcagtaatgagtgtaaggaactcctttctctccccaaaggaggaggctggatatcccttcaccaacatcaataccaaggcttttggtgcccaacagaaatattccaaggcataatcgctttccaaaagcacttccaagctagggactccgatatagttgtggccagcgtacccaaatccggcaccacatggttgaaagccttgatttttgctattgtgaatcaacaacgtttcaaaataaagatccatcccttgctcacttccaactctcataatcttgtccccttcttagaggtggatctctatataaacaacctagttcctgatttctcatccaagtttcctgagccaagactctttgcgacccattttcctttctttctttggccacaatctttagctccattgtcccttgatgaggcctttgatatgtattgccaaggtgtggatgtgtatggtccattttgggatcacatgttggggtactggaaagagagcttgaagagacctaacaatgtgttattcttgaagtacgaggacatgaagaaagatggtaagttggagatcaacaaaactggaacgtttgtcttgaatatggcgagtaagaacctgttcagaaaagctgaggtgggagattgggttaactatttggccactatgatggagcagagaatgtccaaagtcatagaagaaacgttgggtagttcaggcttgactttcaaagggactcccgagctagcagatcatgtccagcagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

266

Amino Acids

30.43

Weight (kDa)

5.91

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 221
AccB7I	CCANNNNNTGG	1 cut(s)	484
AclI	AACGTT	3 cut(s)	268, 620, 734
AclWI	GGATC	3 cut(s)	277, 345, 516
AcoI	YGGCCR	3 cut(s)	201, 425, 690
AfaI	GTAC	3 cut(s)	210, 524, 572
AfiI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 457, 484
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	235, 274, 541, 568, 631, 760
AluBI	AGCT	5 cut(s)	179, 440, 537, 662, 775
AluI	AGCT	5 cut(s)	179, 440, 537, 662, 775
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	3 cut(s)	277, 345, 516
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	4 cut(s)	201, 425, 459, 690
Asp700I	GAANNNNTTC	1 cut(s)	650
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	35, 92
AsuNHI	GCTAGC	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	3 cut(s)	203, 427, 692
BanI	GGYRCC	2 cut(s)	126, 221
BbvCI	CCTCAGC	1 cut(s)	663
BccI	CCATC	4 cut(s)	20, 294, 584, 694
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	4 cut(s)	180, 356, 776, 799
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	128, 223
BmtI	GCTAGC	1 cut(s)	779
Bpu10I	CCTNAGC	2 cut(s)	384, 663
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	115, 145, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 457, 484
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	530, 619
BseDI	CCNNGG	3 cut(s)	115, 145, 478
BseGI	GGATG	3 cut(s)	286, 371, 493
BseLI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 457, 484
BseMII	CTCAG	3 cut(s)	55, 375, 654
BseNI	ACTGG	2 cut(s)	530, 619
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	203, 427, 461, 692
BshNI	GGYRCC	2 cut(s)	126, 221
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	4 cut(s)	197, 305, 433, 778
BslI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 457, 484
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	4 cut(s)	197, 305, 433, 778
BsnI	GGCC	4 cut(s)	203, 427, 461, 692
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	282, 337, 508, 603, 781
BspANI	GGCC	4 cut(s)	203, 427, 461, 692
BspCNI	CTCAG	3 cut(s)	54, 376, 655
BspLI	GGNNCC	2 cut(s)	128, 223
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	277, 345, 516
BspT107I	GGYRCC	2 cut(s)	126, 221
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	530, 619
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	115, 145, 478
BssMI	GATC	5 cut(s)	282, 337, 508, 603, 781
BssT1I	CCWWGG	3 cut(s)	115, 145, 478
Bst6I	CTCTTC	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	18, 205, 777
BstDEI	CTNAG	4 cut(s)	41, 328, 384, 663
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	286, 371, 493
BstKTI	GATC	5 cut(s)	285, 340, 511, 606, 784
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	282, 337, 508, 603, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	282, 337
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	2 cut(s)	282, 337
BsuRI	GGCC	4 cut(s)	203, 427, 461, 692
BtsCI	GGATG	3 cut(s)	286, 371, 493
Cac8I	GCNNGC	3 cut(s)	18, 205, 777
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	209, 523, 571
CviAII	CATG	4 cut(s)	228, 514, 580, 785
CviQI	GTAC	3 cut(s)	209, 523, 571
DdeI	CTNAG	4 cut(s)	41, 328, 384, 663
DpnI	GATC	5 cut(s)	284, 339, 510, 605, 783
DpnII	GATC	5 cut(s)	282, 337, 508, 603, 781
EaeI	YGGCCR	3 cut(s)	201, 425, 690
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	3 cut(s)	115, 145, 478
Eco147I	AGGCCT	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	770
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	115, 145, 478
ErhI	CCWWGG	3 cut(s)	115, 145, 478
FaeI	CATG	4 cut(s)	231, 517, 583, 788
FaqI	GGGAC	4 cut(s)	197, 305, 433, 778
FatI	CATG	4 cut(s)	227, 513, 579, 784
FokI	GGATG	3 cut(s)	273, 358, 500
FspBI	CTAG	4 cut(s)	180, 356, 776, 799
HaeIII	GGCC	4 cut(s)	203, 427, 461, 692
HapII	CCGG	2 cut(s)	17, 219
Hin1II	CATG	4 cut(s)	231, 517, 583, 788
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	185, 259, 393, 766
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	2 cut(s)	35, 92
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	2 cut(s)	190, 656
Hpy188III	TCNNGA	5 cut(s)	362, 383, 565, 628, 770
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	2 cut(s)	107, 334
HpyCH4IV	ACGT	3 cut(s)	268, 620, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	41, 328, 384, 663
HpySE526I	ACGT	3 cut(s)	268, 620, 734
Hsp92II	CATG	4 cut(s)	231, 517, 583, 788
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	282, 337, 508, 603, 781
LmnI	GCTCC	2 cut(s)	445, 703
MaeI	CTAG	4 cut(s)	180, 356, 776, 799
MaeII	ACGT	3 cut(s)	268, 620, 734
MalI	GATC	5 cut(s)	284, 339, 510, 605, 783
MboI	GATC	5 cut(s)	282, 337, 508, 603, 781
MboII	GAAGA	3 cut(s)	553, 595, 740
MflI	RGATCY	2 cut(s)	282, 337
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	3 cut(s)	203, 427, 692
MluNI	TGGCCA	3 cut(s)	203, 427, 692
MlyI	GAGTC	3 cut(s)	179, 387, 760
MmeI	TCCRAC	2 cut(s)	327, 579
MnlI	CCTC	7 cut(s)	50, 74, 77, 325, 451, 568, 658
Mox20I	TGGCCA	3 cut(s)	203, 427, 692
MroNI	GCCGGC	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	650
MscI	TGGCCA	3 cut(s)	203, 427, 692
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	3 cut(s)	203, 427, 692
MspI	CCGG	2 cut(s)	17, 219
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	5 cut(s)	282, 337, 508, 603, 781
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	775
NlaIII	CATG	4 cut(s)	231, 517, 583, 788
NlaIV	GGNNCC	2 cut(s)	128, 223
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	461
PciI	ACATGT	1 cut(s)	513
PdiI	GCCGGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	484
PleI	GAGTC	3 cut(s)	179, 387, 760
PpsI	GAGTC	3 cut(s)	179, 387, 760
PscI	ACATGT	1 cut(s)	513
Psp1406I	AACGTT	3 cut(s)	268, 620, 734
PspN4I	GGNNCC	2 cut(s)	128, 223
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	282, 337
RsaI	GTAC	3 cut(s)	210, 524, 572
RsaNI	GTAC	3 cut(s)	209, 523, 571
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	1 cut(s)	681
Sau3AI	GATC	5 cut(s)	282, 337, 508, 603, 781
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	3 cut(s)	179, 387, 760
SduI	GDGCHC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	698
SseBI	AGGCCT	1 cut(s)	461
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	4 cut(s)	180, 356, 776, 799
StuI	AGGCCT	1 cut(s)	461
StyI	CCWWGG	3 cut(s)	115, 145, 478
TaiI	ACGT	3 cut(s)	271, 623, 737
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TspDTI	ATGAA	1 cut(s)	596
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	455
XceI	RCATGY	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	4 cut(s)	180, 356, 776, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.