Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

16425660 .. 16427084

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCCCCCTAAAGCTTCAATGGCTATCACAGAAAACCAGCCGGCTGATCACGAGGAAGAAAAGCTCAGTGATGAGTGCAAGGCACTCCTTCTTTCTCTCCCCAAAGAGAAAGGGTGGAGAACCCTGCACCAATATCGATTCCAGGGTTTCTGGTGCCAATCTGCTGAAATCCAATCCATAATGGCTTTCCAAAACCACTTCCAAGCTAATGACTCCGACGTAGTCTTGGCCACCATCCCAAAATCGGGCACAACATGGTTAAAAGCCTTGACTTTTGCTATCGTGAACCGACACCGCTTCTCAATCAAGAGCCATCCTTTGCTCACTTCCAACCCTCATCATCTTGTGCCATTCTTCGAGTACAATCTCTATGCAAACAACCAACTTCCTGATCTCTCCAAATTTCCTGAGCCAAGACTGTTTGGGACACACATTCCTTATCCTTCTTTGGGTACAATCAAAAAGTCCAACTGTAAGATGGTTTATATCTGCAGAAACCCATTCGACACATTTGTTTCTAGTTGGCATTTCATCAACAAAGGGAAGCCACAGTCTGAAACTCCAATGTCCCTTGAGGAGGCCTTTGATATGTATTGCAAGGGCATCGTTGGGTTTGGTCCATTTTGGGAGCACATGTTGGGGTACTGGAAAGAGAGCTTGAACAGACCCGACAAGGTCTTGTTCTTAAAGTACGAGGACATGAAGGAAGATAGTGCACTTCACTTGAAAAGATTGGCAAAGTTCCTGGAGTACCCTTTTACTTTGGAGGAGGAGAGAAATGGTGTAATTCAAGATATAGAAAAGCTCTGTTCTTTTGAGACCATGAAGAAATTGGAGGTGAATAAAAGTGGCATGTTTGTCAAGAACTTCGAGAATAAGAGCCTGTTTAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGAGCCCTAAGATGGCGGAGAGGTTGTCCAAAGTCATAGAAGAAAGGTTGGGTGGTTCTGGTTTGAGATTCAATGTGTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

335

Amino Acids

38.9

Weight (kDa)

8.38

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	71 - 328	1.7e-70	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	2 cut(s)	295, 938
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	5 cut(s)	362, 454, 644, 692, 752
AfiI	CCNNNNNNNGG	5 cut(s)	244, 245, 449, 577, 934
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	5 cut(s)	18, 661, 727, 791, 994
AjnI	CCWGG	2 cut(s)	141, 744
AluBI	AGCT	6 cut(s)	14, 64, 206, 657, 805, 896
AluI	AGCT	6 cut(s)	14, 64, 206, 657, 805, 896
Alw21I	GWGCWC	2 cut(s)	633, 718
Alw26I	GTCTC	1 cut(s)	812
Alw44I	GTGCAC	1 cut(s)	714
AoxI	GGCC	2 cut(s)	228, 579
ApaLI	GTGCAC	1 cut(s)	714
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	2 cut(s)	251, 718
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	929
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	633, 718
BbvCI	CCTCAGC	1 cut(s)	897
BccI	CCATC	4 cut(s)	242, 321, 472, 928
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 586, 620
BciT130I	CCWGG	2 cut(s)	143, 746
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	143, 746
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	143, 746
BmsI	GCATC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	2 cut(s)	408, 897
BpuEI	CTTGAG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	812
BsaJI	CCNNGG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	6 cut(s)	620, 650, 897, 927, 932, 962
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 245, 449, 577, 934
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	2 cut(s)	143, 746
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	234, 313
BseLI	CCNNNNNNNGG	5 cut(s)	244, 245, 449, 577, 934
BseMII	CTCAG	3 cut(s)	79, 399, 888
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	3 cut(s)	590, 782, 785
BseSI	GKGCMC	2 cut(s)	251, 718
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	230, 581
BshNI	GGYRCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	633, 718
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	439, 553
BslI	CCNNNNNNNGG	5 cut(s)	244, 245, 449, 577, 934
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	2 cut(s)	439, 553
BsnI	GGCC	2 cut(s)	230, 581
Bso31I	GGTCTC	1 cut(s)	812
Bsp1286I	GDGCHC	4 cut(s)	251, 633, 718, 929
Bsp143I	GATC	2 cut(s)	46, 391
BspACI	CCGC	2 cut(s)	295, 938
BspANI	GGCC	2 cut(s)	230, 581
BspCNI	CTCAG	3 cut(s)	78, 400, 889
BspDI	ATCGAT	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	650
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	46, 391
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	143, 746
Bst4CI	ACNGT	3 cut(s)	420, 473, 552
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	5 cut(s)	65, 408, 897, 930, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	234, 313
BstKTI	GATC	2 cut(s)	49, 394
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	2 cut(s)	46, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	143, 746
BstNSI	RCATGY	2 cut(s)	637, 856
BstSCI	CCNGG	2 cut(s)	141, 744
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	2 cut(s)	251, 718
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	230, 581
BsuTUI	ATCGAT	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	234, 313
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	617
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	5 cut(s)	361, 453, 643, 691, 751
CviAII	CATG	5 cut(s)	255, 634, 700, 823, 853
CviQI	GTAC	5 cut(s)	361, 453, 643, 691, 751
DdeI	CTNAG	5 cut(s)	65, 408, 897, 930, 1005
DpnI	GATC	2 cut(s)	48, 393
DpnII	GATC	2 cut(s)	46, 391
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	953
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	812
Eco47I	GGWCC	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	141, 744
EcoT38I	GRGCYC	1 cut(s)	929
FaeI	CATG	5 cut(s)	258, 637, 703, 826, 856
FaqI	GGGAC	2 cut(s)	439, 553
FatI	CATG	5 cut(s)	254, 633, 699, 822, 852
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	2 cut(s)	221, 300
FriOI	GRGCYC	1 cut(s)	929
FspBI	CTAG	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	230, 581
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	5 cut(s)	258, 637, 703, 826, 856
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	3 cut(s)	138, 212, 990
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	286, 716, 916
Hpy188I	TCNGA	2 cut(s)	217, 556
Hpy188III	TCNNGA	8 cut(s)	50, 283, 307, 389, 407, 791, 862, 871
Hpy8I	GTNNAC	3 cut(s)	286, 716, 916
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	98, 453, 697
HpyCH4III	ACNGT	3 cut(s)	420, 473, 552
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	6 cut(s)	78, 127, 374, 492, 597, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	5 cut(s)	65, 408, 897, 930, 1005
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	258, 637, 703, 826, 856
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	46
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	46, 391
LmnI	GCTCC	1 cut(s)	628
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	219
MalI	GATC	2 cut(s)	48, 393
MboI	GATC	2 cut(s)	46, 391
MboII	GAAGA	5 cut(s)	68, 346, 719, 838, 974
MhlI	GDGCHC	4 cut(s)	251, 633, 718, 929
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	401, 786, 830
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	3 cut(s)	240, 354, 492
Mox20I	TGGCCA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	3 cut(s)	260, 686, 915
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	143, 746
MvaI	CCWGG	2 cut(s)	143, 746
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	46, 391
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	258, 637, 703, 826, 856
NlaIV	GGNNCC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	637, 856
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	1 cut(s)	633
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	138, 990
PflFI	GACNNNGTC	2 cut(s)	221, 674
PfoI	TCCNGGA	1 cut(s)	744
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	141, 744
PspGI	CCWGG	2 cut(s)	141, 744
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	494
PsyI	GACNNNGTC	2 cut(s)	221, 674
RsaI	GTAC	5 cut(s)	362, 454, 644, 692, 752
RsaNI	GTAC	5 cut(s)	361, 453, 643, 691, 751
SaqAI	TTAA	3 cut(s)	260, 686, 915
Sau3AI	GATC	2 cut(s)	46, 391
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	143, 746
SduI	GDGCHC	4 cut(s)	251, 633, 718, 929
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	401, 786, 830
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	2 cut(s)	295, 938
SspMI	CTAG	1 cut(s)	519
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	141, 744
TaaI	ACNGT	3 cut(s)	420, 473, 552
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	4 cut(s)	136, 357, 504, 870
TasI	AATT	3 cut(s)	401, 786, 830
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	138, 990
Tru1I	TTAA	3 cut(s)	260, 686, 915
Tru9I	TTAA	3 cut(s)	260, 686, 915
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	520, 716, 839
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	2 cut(s)	221, 674
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	2 cut(s)	637, 856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	475, 829
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.