Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008840.1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

49323 .. 50935

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008840.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgagtacatttggtccattttgggatcacattttggggtactggaaagagagcttgaagagacctaacaatgtgttattcttgaagtacgaggacatgaaggaagatggtgtagttcacttgaaggcattggctaagtttttagactgccctttcactgaggaggaggagagaaatggtgtgattgaagcaatagcaaagctctgttcttttgaggccatgaaaaagttggagatcaacaaaactggaacgcggaggcccactggccaaggcccatctctgacccctctccttcccagacccgactacttcagactccaagagagcaacctccattcaccagtccggcggccggccgtggacctccaccatggccatggtcaagactggactttgatcaaacggcctgtgcaaccccgcagcctcctcgctacaaagctcggatggatggatcagaaacaagatccaaacaccgtctcaacccgaaaccacgaacggagccgaacacacctggagcaaacaacgccgtcgaccgcccctgcccacgccgcgatcaaagactgtcaccgcttggatcgaagcctgccaacacgatctgagaagccaccaaaccaggagccctgccgcacccacaatcagagaagcctccgatcagaaaagcctccgatcgaaaacttctgccgcaccctacgatcgtcgccaagaacccacctcgcgccgtcaccgtacctcgtcacggtcgtccacttgcctgaggggaaagcgccgccgccactccacaaaacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

262

Amino Acids

30.0

Weight (kDa)

9.57

Isoelectric Point (pI)

74.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	3 cut(s)	253, 551, 716
AclWI	GGATC	4 cut(s)	33, 458, 459, 582
AcoI	YGGCCR	4 cut(s)	265, 350, 354, 373
AcuI	CTGAAG	1 cut(s)	295
AfaI	GTAC	4 cut(s)	7, 41, 89, 728
AfiI	CCNNNNNNNGG	2 cut(s)	352, 736
AgsI	TTSAA	4 cut(s)	58, 85, 124, 188
AjnI	CCWGG	2 cut(s)	510, 612
AluBI	AGCT	3 cut(s)	54, 202, 439
AluI	AGCT	3 cut(s)	54, 202, 439
Alw26I	GTCTC	2 cut(s)	55, 481
AlwI	GGATC	4 cut(s)	33, 458, 459, 582
AoxI	GGCC	8 cut(s)	216, 257, 265, 271, 350, 354, 373, 404
ApeKI	GCWGC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	718, 766
AspS9I	GGNCC	4 cut(s)	14, 258, 272, 361
AsuHPI	GGTGA	3 cut(s)	330, 557, 714
AvaII	GGWCC	2 cut(s)	14, 361
AxyI	CCTNAGG	1 cut(s)	753
BalI	TGGCCA	2 cut(s)	267, 375
BanII	GRGCYC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	4 cut(s)	101, 283, 438, 442
BceAI	ACGGC	4 cut(s)	341, 419, 511, 703
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	2 cut(s)	512, 614
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	55, 481
BfaI	CTAG	1 cut(s)	787
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	7 cut(s)	350, 421, 549, 625, 682, 767, 770
BlsI	GCNGC	7 cut(s)	351, 422, 550, 626, 683, 768, 771
Bme1390I	CCNGG	2 cut(s)	512, 614
Bme18I	GGWCC	2 cut(s)	14, 361
BmgT120I	GGNCC	4 cut(s)	14, 258, 272, 361
BmiI	GGNNCC	2 cut(s)	500, 618
BmrFI	CCNGG	2 cut(s)	512, 614
BpmI	CTGGAG	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	268, 357, 370, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 736
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	5 cut(s)	47, 250, 268, 341, 392
Bse21I	CCTNAGG	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	512, 614
BseDI	CCNNGG	4 cut(s)	268, 357, 370, 376
BseGI	GGATG	2 cut(s)	449, 453
BseLI	CCNNNNNNNGG	2 cut(s)	352, 736
BseMII	CTCAG	3 cut(s)	150, 588, 744
BseNI	ACTGG	5 cut(s)	47, 250, 268, 341, 392
BseRI	GAGGAG	4 cut(s)	176, 179, 182, 416
BseX3I	CGGCCG	2 cut(s)	350, 354
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	3 cut(s)	253, 551, 716
Bsh1285I	CGRYCG	6 cut(s)	353, 357, 534, 669, 695, 741
BshFI	GGCC	8 cut(s)	218, 259, 267, 273, 352, 356, 375, 406
BsiEI	CGRYCG	6 cut(s)	353, 357, 534, 669, 695, 741
BsiSI	CCGG	2 cut(s)	346, 353
BslI	CCNNNNNNNGG	2 cut(s)	352, 736
BsmAI	GTCTC	2 cut(s)	55, 481
BsmBI	CGTCTC	1 cut(s)	481
BsnI	GGCC	8 cut(s)	218, 259, 267, 273, 352, 356, 375, 406
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp19I	CCATGG	2 cut(s)	370, 376
BspANI	GGCC	8 cut(s)	218, 259, 267, 273, 352, 356, 375, 406
BspCNI	CTCAG	3 cut(s)	151, 589, 745
BspFNI	CGCG	3 cut(s)	253, 551, 716
BspLI	GGNNCC	2 cut(s)	500, 618
BspPI	GGATC	4 cut(s)	33, 458, 459, 582
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	5 cut(s)	47, 250, 268, 341, 392
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	268, 357, 370, 376
BssT1I	CCWWGG	3 cut(s)	268, 370, 376
Bst2UI	CCWGG	2 cut(s)	512, 614
Bst4CI	ACNGT	4 cut(s)	475, 563, 726, 739
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	354, 584
BstDEI	CTNAG	4 cut(s)	135, 159, 597, 753
BstDSI	CCRYGG	3 cut(s)	357, 370, 376
BstF5I	GGATG	2 cut(s)	449, 453
BstFNI	CGCG	3 cut(s)	253, 551, 716
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	718, 766
BstMAI	GTCTC	2 cut(s)	55, 481
BstMCI	CGRYCG	6 cut(s)	353, 357, 534, 669, 695, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 548
BstNI	CCWGG	2 cut(s)	512, 614
BstSCI	CCNGG	2 cut(s)	510, 612
BstUI	CGCG	3 cut(s)	253, 551, 716
BstV1I	GCAGC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	463
BstZI	CGGCCG	2 cut(s)	350, 354
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	8 cut(s)	218, 259, 267, 273, 352, 356, 375, 406
BtgI	CCRYGG	3 cut(s)	357, 370, 376
BtsCI	GGATG	2 cut(s)	449, 453
BtsIMutI	CAGTG	2 cut(s)	156, 261
Cac8I	GCNNGC	2 cut(s)	354, 584
CfoI	GCGC	2 cut(s)	718, 766
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	14, 258, 272, 361
Csp6I	GTAC	4 cut(s)	6, 40, 88, 727
CviAII	CATG	4 cut(s)	97, 220, 371, 377
CviQI	GTAC	4 cut(s)	6, 40, 88, 727
DdeI	CTNAG	4 cut(s)	135, 159, 597, 753
EaeI	YGGCCR	4 cut(s)	265, 350, 354, 373
EagI	CGGCCG	2 cut(s)	350, 354
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	2 cut(s)	350, 354
Eco130I	CCWWGG	3 cut(s)	268, 370, 376
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	14, 361
Eco52I	CGGCCG	2 cut(s)	350, 354
Eco57I	CTGAAG	1 cut(s)	295
Eco81I	CCTNAGG	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	510, 612
EcoT14I	CCWWGG	3 cut(s)	268, 370, 376
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	3 cut(s)	268, 370, 376
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	4 cut(s)	100, 223, 374, 380
FaiI	YATR	4 cut(s)	98, 221, 372, 378
FatI	CATG	4 cut(s)	96, 219, 370, 376
FauI	CCCGC	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	7 cut(s)	350, 421, 549, 625, 682, 767, 770
FokI	GGATG	2 cut(s)	456, 460
FriOI	GRGCYC	1 cut(s)	621
FseI	GGCCGGCC	1 cut(s)	356
Fsp4HI	GCNGC	7 cut(s)	350, 421, 549, 625, 682, 767, 770
FspBI	CTAG	1 cut(s)	787
GlaI	GCGC	2 cut(s)	717, 765
GluI	GCNGC	7 cut(s)	350, 421, 549, 625, 682, 767, 770
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	8 cut(s)	218, 259, 267, 273, 352, 356, 375, 406
HapII	CCGG	2 cut(s)	346, 353
HhaI	GCGC	2 cut(s)	718, 766
Hin1II	CATG	4 cut(s)	100, 223, 374, 380
Hin6I	GCGC	2 cut(s)	716, 764
HinP1I	GCGC	2 cut(s)	716, 764
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	346, 353
HphI	GGTGA	3 cut(s)	330, 557, 714
Hpy166II	GTNNAC	4 cut(s)	118, 361, 531, 745
Hpy188I	TCNGA	9 cut(s)	282, 314, 443, 456, 598, 639, 650, 655, 666
Hpy188III	TCNNGA	2 cut(s)	82, 383
Hpy8I	GTNNAC	4 cut(s)	118, 361, 531, 745
Hpy99I	CGWCG	2 cut(s)	532, 700
HpyAV	CCTTC	3 cut(s)	94, 118, 302
HpyCH4III	ACNGT	4 cut(s)	475, 563, 726, 739
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 548
HpyF3I	CTNAG	4 cut(s)	135, 159, 597, 753
Hsp92II	CATG	4 cut(s)	100, 223, 374, 380
HspAI	GCGC	2 cut(s)	716, 764
KroI	GCCGGC	1 cut(s)	352
KroNI	GCCGGC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	498, 514, 616
Lsp1109I	GCAGC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	787
MaeIII	GTNAC	3 cut(s)	563, 720, 733
MboII	GAAGA	2 cut(s)	70, 116
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	2 cut(s)	267, 375
MluNI	TGGCCA	2 cut(s)	267, 375
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	210
Mox20I	TGGCCA	2 cut(s)	267, 375
MroNI	GCCGGC	1 cut(s)	352
MscI	TGGCCA	2 cut(s)	267, 375
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	2 cut(s)	267, 375
MspI	CCGG	2 cut(s)	346, 353
MspR9I	CCNGG	2 cut(s)	512, 614
MvaI	CCWGG	2 cut(s)	512, 614
MvnI	CGCG	3 cut(s)	253, 551, 716
MwoI	GCNNNNNNNGC	2 cut(s)	523, 548
NaeI	GCCGGC	1 cut(s)	354
NcoI	CCATGG	2 cut(s)	370, 376
NgoMIV	GCCGGC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	100, 223, 374, 380
NlaIV	GGNNCC	2 cut(s)	500, 618
NmuCI	GTSAC	3 cut(s)	563, 720, 733
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	354
PkrI	GCNGC	7 cut(s)	351, 422, 550, 626, 683, 768, 771
Ple19I	CGATCG	2 cut(s)	669, 695
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	510, 612
PspGI	CCWGG	2 cut(s)	510, 612
PspN4I	GGNNCC	2 cut(s)	500, 618
PspPI	GGNCC	4 cut(s)	14, 258, 272, 361
PsuI	RGATCY	1 cut(s)	463
PvuI	CGATCG	2 cut(s)	669, 695
RigI	GGCCGGCC	1 cut(s)	356
RsaI	GTAC	4 cut(s)	7, 41, 89, 728
RsaNI	GTAC	4 cut(s)	6, 40, 88, 727
RseI	CAYNNNNRTG	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	529
SatI	GCNGC	7 cut(s)	350, 421, 549, 625, 682, 767, 770
Sau96I	GGNCC	4 cut(s)	14, 258, 272, 361
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	512, 614
SduI	GDGCHC	1 cut(s)	621
SinI	GGWCC	2 cut(s)	14, 361
SmiMI	CAYNNNNRTG	1 cut(s)	375
SspMI	CTAG	1 cut(s)	787
StyD4I	CCNGG	2 cut(s)	510, 612
StyI	CCWWGG	3 cut(s)	268, 370, 376
TaaI	ACNGT	4 cut(s)	475, 563, 726, 739
TaqI	TCGA	3 cut(s)	530, 577, 669
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	6 cut(s)	352, 551, 627, 684, 769, 772
TscAI	CASTG	2 cut(s)	163, 268
TseFI	GTSAC	3 cut(s)	563, 720, 733
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	3 cut(s)	563, 720, 733
TspDTI	ATGAA	2 cut(s)	113, 236
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	163, 268
VpaK11BI	GGWCC	2 cut(s)	14, 361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 374
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.