Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

13507842 .. 13508831

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTATCACAGAAAACCAGCCGGCTGATCACGAGGAAGAAAAGCTCAGTGATGAGTGCAAGGCACTCCTTCTTTCTCTCCCCAAAGAGAGAGGCTGGAGAACCCTGCACCAATATCGATTCCAGGGTTTCTGGTGCCAATCTGCTGAAATCCAATCCATAATGGCTTTCCAAAACCACTTCCAAGCTAATGACTCCGACGTAGTCTTGGCCACCATCCCAAAATCGGGCACAACATGGTTAAAAGCCTTGACTTTTGCTATCGTGAACCGACACCGCTTCTCAATCAAGAGCCATCCTTTGCTCACTTCCAACCCTCATCATCTTGTGCCATTCTTCGAGTACAATCTCTATGCAAACAACCAACTTCCTGATCTCTCCAAATTTCCTGAGCCAAGACTGTTTGGGACACACATTCCTTATCCTTCTTTGGGTACAATCAAAAAGTCCAACTGTAAGATGGTTTATATCTGCAGAAACCCATTCGACACATTTGTTTCTAGTTGGCATTTCATCAACAAAGGGAAGCCACAGTCTGAAACTCCAATGTCCCTTGAGGAGGCCTTTGATATGTATTGCAAGGGCATCGTTGGGTTTGGTCCATTTTGGGAGCACATGTTGGGTTACTGGAAAGAGAGCTTGAACAGACCCGACAAGGTCTTGTTCTTAAAGTACGAGGACATGAAGGAAGATAGTGCACTTCACTTGAAAAGATTGGCAAAGTTCCTGGAGTACCCTTTTACTTTGGAGGAGGAGAGAAATGGTGTAATTCAAGATATAGAAAAGCTCTGTTCTTTTGAGACCATGAAGAAATTGGAGGTGAATAAAAGTGGCATGTTTGTCAAGAACTTCGAGAATAAGAGCCTGTTTAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGAGCCCTAAGATGGCGGAGAGGTTGTCCAAAGTCATAGAAGAAAGGTTGGGTGGTTCTGGTTTGAGATTCAATGTGTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

329

Amino Acids

38.32

Weight (kDa)

8.11

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	65 - 322	1.6e-70	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AciI	CCGC	2 cut(s)	277, 920
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	4 cut(s)	344, 436, 674, 734
AfiI	CCNNNNNNNGG	5 cut(s)	226, 227, 431, 559, 916
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	4 cut(s)	643, 709, 773, 976
AjnI	CCWGG	2 cut(s)	123, 726
AluBI	AGCT	5 cut(s)	46, 188, 639, 787, 878
AluI	AGCT	5 cut(s)	46, 188, 639, 787, 878
Alw21I	GWGCWC	2 cut(s)	615, 700
Alw26I	GTCTC	1 cut(s)	794
Alw44I	GTGCAC	1 cut(s)	696
AoxI	GGCC	2 cut(s)	210, 561
ApaLI	GTGCAC	1 cut(s)	696
ApoI	RAATTY	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	832
AvaII	GGWCC	1 cut(s)	599
BaeGI	GKGCMC	2 cut(s)	233, 700
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	911
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	615, 700
BbvCI	CCTCAGC	1 cut(s)	879
BccI	CCATC	4 cut(s)	224, 303, 454, 910
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 568, 602
BciT130I	CCWGG	2 cut(s)	125, 728
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	125, 728
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	125, 728
BmsI	GCATC	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	118, 749
Bpu10I	CCTNAGC	2 cut(s)	390, 879
BpuEI	CTTGAG	1 cut(s)	575
Bsa29I	ATCGAT	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	6 cut(s)	602, 632, 879, 909, 914, 944
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 227, 431, 559, 916
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	125, 728
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	216, 295
BseLI	CCNNNNNNNGG	5 cut(s)	226, 227, 431, 559, 916
BseMII	CTCAG	3 cut(s)	61, 381, 870
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	3 cut(s)	572, 764, 767
BseSI	GKGCMC	2 cut(s)	233, 700
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	212, 563
BshNI	GGYRCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	615, 700
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	421, 535
BslI	CCNNNNNNNGG	5 cut(s)	226, 227, 431, 559, 916
BsmAI	GTCTC	1 cut(s)	794
BsmFI	GGGAC	2 cut(s)	421, 535
BsnI	GGCC	2 cut(s)	212, 563
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	4 cut(s)	233, 615, 700, 911
Bsp143I	GATC	2 cut(s)	28, 373
BspACI	CCGC	2 cut(s)	277, 920
BspANI	GGCC	2 cut(s)	212, 563
BspCNI	CTCAG	3 cut(s)	60, 382, 871
BspDI	ATCGAT	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	794
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	632
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	28, 373
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	125, 728
Bst4CI	ACNGT	3 cut(s)	402, 455, 534
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	5 cut(s)	47, 390, 879, 912, 987
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	216, 295
BstKTI	GATC	2 cut(s)	31, 376
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	2 cut(s)	28, 373
BstNI	CCWGG	2 cut(s)	125, 728
BstNSI	RCATGY	2 cut(s)	619, 838
BstSCI	CCNGG	2 cut(s)	123, 726
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	2 cut(s)	233, 700
Bsu15I	ATCGAT	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	212, 563
BsuTUI	ATCGAT	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	216, 295
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	599
ClaI	ATCGAT	1 cut(s)	118
Csp6I	GTAC	4 cut(s)	343, 435, 673, 733
CviAII	CATG	5 cut(s)	237, 616, 682, 805, 835
CviQI	GTAC	4 cut(s)	343, 435, 673, 733
DdeI	CTNAG	5 cut(s)	47, 390, 879, 912, 987
DpnI	GATC	2 cut(s)	30, 375
DpnII	GATC	2 cut(s)	28, 373
EaeI	YGGCCR	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	935
Eco147I	AGGCCT	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	911
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	123, 726
EcoT38I	GRGCYC	1 cut(s)	911
FaeI	CATG	5 cut(s)	240, 619, 685, 808, 838
FaqI	GGGAC	2 cut(s)	421, 535
FatI	CATG	5 cut(s)	236, 615, 681, 804, 834
FbaI	TGATCA	1 cut(s)	28
FokI	GGATG	2 cut(s)	203, 282
FriOI	GRGCYC	1 cut(s)	911
FspBI	CTAG	1 cut(s)	501
GsuI	CTGGAG	2 cut(s)	118, 749
HaeIII	GGCC	2 cut(s)	212, 563
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	5 cut(s)	240, 619, 685, 808, 838
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HinfI	GANTC	3 cut(s)	120, 194, 972
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	832
Hpy166II	GTNNAC	3 cut(s)	268, 698, 898
Hpy188I	TCNGA	2 cut(s)	199, 538
Hpy188III	TCNNGA	8 cut(s)	32, 265, 289, 371, 389, 773, 844, 853
Hpy8I	GTNNAC	3 cut(s)	268, 698, 898
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	80, 435, 679
HpyCH4III	ACNGT	3 cut(s)	402, 455, 534
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	6 cut(s)	60, 109, 356, 474, 579, 698
HpyF3I	CTNAG	5 cut(s)	47, 390, 879, 912, 987
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	240, 619, 685, 808, 838
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	2 cut(s)	28, 373
LmnI	GCTCC	1 cut(s)	610
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	2 cut(s)	30, 375
MboI	GATC	2 cut(s)	28, 373
MboII	GAAGA	5 cut(s)	50, 328, 701, 820, 956
MhlI	GDGCHC	4 cut(s)	233, 615, 700, 911
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	3 cut(s)	383, 768, 812
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	3 cut(s)	222, 336, 474
Mox20I	TGGCCA	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	242, 668, 897
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	125, 728
MvaI	CCWGG	2 cut(s)	125, 728
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	28, 373
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	240, 619, 685, 808, 838
NlaIV	GGNNCC	1 cut(s)	137
NspI	RCATGY	2 cut(s)	619, 838
PceI	AGGCCT	1 cut(s)	563
PciI	ACATGT	1 cut(s)	615
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	120, 972
PflFI	GACNNNGTC	2 cut(s)	203, 656
PfoI	TCCNGGA	1 cut(s)	726
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	123, 726
PspGI	CCWGG	2 cut(s)	123, 726
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	476
PsyI	GACNNNGTC	2 cut(s)	203, 656
RsaI	GTAC	4 cut(s)	344, 436, 674, 734
RsaNI	GTAC	4 cut(s)	343, 435, 673, 733
SaqAI	TTAA	3 cut(s)	242, 668, 897
Sau3AI	GATC	2 cut(s)	28, 373
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	125, 728
SduI	GDGCHC	4 cut(s)	233, 615, 700, 911
SfaNI	GCATC	1 cut(s)	594
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	3 cut(s)	383, 768, 812
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	2 cut(s)	277, 920
SspMI	CTAG	1 cut(s)	501
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	123, 726
TaaI	ACNGT	3 cut(s)	402, 455, 534
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	118, 339, 486, 852
TasI	AATT	3 cut(s)	383, 768, 812
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	120, 972
Tru1I	TTAA	3 cut(s)	242, 668, 897
Tru9I	TTAA	3 cut(s)	242, 668, 897
TscAI	CASTG	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	502, 698, 821
TspRI	CASTG	1 cut(s)	55
Tth111I	GACNNNGTC	2 cut(s)	203, 656
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	599
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	2 cut(s)	619, 838
XcmI	CCANNNNNNNNNTGG	2 cut(s)	457, 811
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.