Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

21103914 .. 21104932

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACTGAAAATCAGCCGCCTGACCATGAAGAAAAAAACCTCAGCAGTGAGCGTAAGGAACTCCTTTCTGTCCCCAAAGAAAGAGGCTGGATAACCCTTCTGCGCCAATATCAATTCCAAGGCTTTTGGTGCCCATCAGCAGAAGTATTCCAAGCCGTAATCTCTTTCCAAAAGCACTTCCATGCTAAAGACTCCGACATAGTTGTGGCCAGCCTACCCAAATCCGGCACAACATGGTTGAAAGCCTTGACTTTTGCAATTTTGAATCGACACCGTTTCGAAATACAGACCCATCCCTTGCTCACTTCCAACTCTCACAATCTTGTGCCATTTTTTGAGTTGGATCTCTATACAAGCAACCTAGTTCCTGATTTCTCATCCAAAAATCCATTCGACTCATTTGTTTCTGCTTGGCATTCCGTTAACGAAGTCCTTCCGCAATCTTCATCTCCATTGTCGCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGAGTGCGTTTGGTCCATTTTGGGATCACATTTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTAGTTCACTTGAAGGCATTGGCTAAGTTTTTAGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGCAATAGCAAAGCTCTGTTCTTTTGAGGCCATGAAAAAGTTGGAGATCAACAAAACTGGAACGTTTGTCATGAACTGGGAGAATAAGACCCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTGGACCCCTAAGATGGAGGAGAGAATGTCTAAAGTCATAGAAGAAAAGTTGGGTGGTTCAGGCTTGACATTCAAAGTGATTCCCGAGCTAGCAGATCCTGTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

306

Amino Acids

35.16

Weight (kDa)

5.77

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	64 - 114	1.8e-10	Sulfotransferase domain
Sulfotransfer_1	PF00685	128 - 291	2.3e-37	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	2 cut(s)	17, 437
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	3 cut(s)	351, 525, 899
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	2 cut(s)	533, 581
AfiI	CCNNNNNNNGG	2 cut(s)	224, 823
AgsI	TTSAA	7 cut(s)	241, 265, 550, 577, 616, 680, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	4 cut(s)	546, 694, 785, 898
AluI	AGCT	4 cut(s)	546, 694, 785, 898
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	3 cut(s)	351, 525, 899
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	207, 468, 708
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	506, 813
AsuII	TTCGAA	1 cut(s)	279
AsuNHI	GCTAGC	1 cut(s)	898
AvaI	CYCGRG	1 cut(s)	893
AvaII	GGWCC	2 cut(s)	506, 813
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	129
BbvCI	CCTCAGC	2 cut(s)	41, 786
BccI	CCATC	4 cut(s)	142, 300, 593, 817
BceAI	ACGGC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	362, 899
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme18I	GGWCC	2 cut(s)	506, 813
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	506, 813
BmiI	GGNNCC	2 cut(s)	131, 815
BmrI	ACTGGG	1 cut(s)	766
BmtI	GCTAGC	1 cut(s)	902
BmuI	ACTGGG	1 cut(s)	766
Bpu10I	CCTNAGC	2 cut(s)	41, 786
Bpu14I	TTCGAA	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	118, 487
BsaXI	ACNNNNNCTCC	4 cut(s)	786, 816, 821, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 823
Bse1I	ACTGG	4 cut(s)	539, 742, 761, 913
BseDI	CCNNGG	2 cut(s)	118, 487
BseGI	GGATG	2 cut(s)	292, 377
BseLI	CCNNNNNNNGG	2 cut(s)	224, 823
BseMII	CTCAG	3 cut(s)	55, 642, 777
BseNI	ACTGG	4 cut(s)	539, 742, 761, 913
BseRI	GAGGAG	4 cut(s)	668, 671, 674, 842
BseSI	GKGCMC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	209, 470, 710
BshNI	GGYRCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	224, 823
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	209, 470, 710
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	343, 517, 726, 904
BspACI	CCGC	2 cut(s)	17, 437
BspANI	GGCC	3 cut(s)	209, 470, 710
BspCNI	CTCAG	3 cut(s)	54, 643, 778
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	131, 815
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	3 cut(s)	351, 525, 899
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	547
BsrI	ACTGG	4 cut(s)	539, 742, 761, 913
BssECI	CCNNGG	2 cut(s)	118, 487
BssMI	GATC	4 cut(s)	343, 517, 726, 904
BssT1I	CCWWGG	2 cut(s)	118, 487
Bst4CI	ACNGT	2 cut(s)	275, 671
Bst6I	CTCTTC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	211, 900
BstDEI	CTNAG	5 cut(s)	41, 627, 651, 786, 819
BstF5I	GGATG	2 cut(s)	292, 377
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	346, 520, 729, 907
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	4 cut(s)	343, 517, 726, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	343, 904
BstYI	RGATCY	2 cut(s)	343, 904
BsuRI	GGCC	3 cut(s)	209, 470, 710
BtsCI	GGATG	2 cut(s)	292, 377
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 648
Cac8I	GCNNGC	2 cut(s)	211, 900
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	506, 813
Csp6I	GTAC	2 cut(s)	532, 580
CviAII	CATG	7 cut(s)	26, 182, 234, 493, 589, 712, 751
CviQI	GTAC	2 cut(s)	532, 580
DdeI	CTNAG	5 cut(s)	41, 627, 651, 786, 819
DpnI	GATC	4 cut(s)	345, 519, 728, 906
DpnII	GATC	4 cut(s)	343, 517, 726, 904
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	118, 487
Eco147I	AGGCCT	1 cut(s)	470
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	506, 813
Eco88I	CYCGRG	1 cut(s)	893
EcoT14I	CCWWGG	2 cut(s)	118, 487
ErhI	CCWWGG	2 cut(s)	118, 487
FaeI	CATG	7 cut(s)	29, 185, 237, 496, 592, 715, 754
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	7 cut(s)	25, 181, 233, 492, 588, 711, 750
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	2 cut(s)	279, 364
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	362, 899
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	209, 470, 710
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	7 cut(s)	29, 185, 237, 496, 592, 715, 754
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	424, 805
HindII	GTYRAC	2 cut(s)	424, 805
HinfI	GANTC	4 cut(s)	191, 265, 395, 889
HpaI	GTTAAC	2 cut(s)	424, 805
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	3 cut(s)	424, 610, 805
Hpy188I	TCNGA	2 cut(s)	196, 779
Hpy188III	TCNNGA	4 cut(s)	368, 574, 751, 893
Hpy8I	GTNNAC	3 cut(s)	424, 610, 805
HpyAV	CCTTC	3 cut(s)	107, 443, 610
HpyCH4III	ACNGT	2 cut(s)	275, 671
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	5 cut(s)	41, 627, 651, 786, 819
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	7 cut(s)	29, 185, 237, 496, 592, 715, 754
HspAI	GCGC	1 cut(s)	103
KspAI	GTTAAC	2 cut(s)	424, 805
Kzo9I	GATC	4 cut(s)	343, 517, 726, 904
MaeI	CTAG	2 cut(s)	362, 899
MaeII	ACGT	1 cut(s)	743
MalI	GATC	4 cut(s)	345, 519, 728, 906
MboI	GATC	4 cut(s)	343, 517, 726, 904
MboII	GAAGA	5 cut(s)	41, 435, 562, 604, 863
MflI	RGATCY	2 cut(s)	343, 904
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	113, 258
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	185, 389
MmeI	TCCRAC	4 cut(s)	219, 321, 333, 702
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	423, 804
MslI	CAYNNNNRTG	2 cut(s)	180, 203
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	4 cut(s)	343, 517, 726, 904
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	7 cut(s)	29, 185, 237, 496, 592, 715, 754
NlaIV	GGNNCC	2 cut(s)	131, 815
NspV	TTCGAA	1 cut(s)	279
PagI	TCATGA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	470
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	265, 889
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	2 cut(s)	185, 389
PpsI	GAGTC	2 cut(s)	185, 389
Psp1406I	AACGTT	1 cut(s)	743
PspN4I	GGNNCC	2 cut(s)	131, 815
PspPI	GGNCC	2 cut(s)	506, 813
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	2 cut(s)	343, 904
RsaI	GTAC	2 cut(s)	533, 581
RsaNI	GTAC	2 cut(s)	532, 580
RseI	CAYNNNNRTG	2 cut(s)	180, 203
SaqAI	TTAA	2 cut(s)	423, 804
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	4 cut(s)	343, 517, 726, 904
Sau96I	GGNCC	2 cut(s)	506, 813
SchI	GAGTC	2 cut(s)	185, 389
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	42, 363, 548, 559, 696, 746, 787, 792, 900
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	506, 813
SmiMI	CAYNNNNRTG	2 cut(s)	180, 203
Sse9I	AATT	2 cut(s)	113, 258
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	2 cut(s)	17, 437
SspMI	CTAG	2 cut(s)	362, 899
StuI	AGGCCT	1 cut(s)	470
StyI	CCWWGG	2 cut(s)	118, 487
TaaI	ACNGT	2 cut(s)	275, 671
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	3 cut(s)	268, 279, 393
TasI	AATT	2 cut(s)	113, 258
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	265, 889
Tru1I	TTAA	2 cut(s)	423, 804
Tru9I	TTAA	2 cut(s)	423, 804
TscAI	CASTG	2 cut(s)	52, 655
TspDTI	ATGAA	5 cut(s)	42, 435, 605, 728, 767
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	52, 655
VpaK11BI	GGWCC	2 cut(s)	506, 813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	362, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.