Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

54215104 .. 54215550

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTATTGCCAAGGCGTGGATGTGTATGGTCATTTTTGGGATCACATGTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTATATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCATTGAGGAGGACGAGAGAAACGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTCAGACCATGAAGAAGTTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGGAGCAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTAGTTCAGGCTTGACTTTCAAAGGGACTCCCGAGCTAGCAGATCATGTCCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

148

Amino Acids

17.31

Weight (kDa)

6.09

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	2 - 131	2.5e-31	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	2 cut(s)	56, 104
AfiI	CCNNNNNNNGG	2 cut(s)	16, 346
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	6 cut(s)	73, 100, 139, 203, 277, 406
AluBI	AGCT	4 cut(s)	69, 217, 308, 421
AluI	AGCT	4 cut(s)	69, 217, 308, 421
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	116, 340
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	422, 445
BmeT110I	CYCGRG	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 346
Bse1I	ACTGG	2 cut(s)	62, 265
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	16, 346
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	62, 265
BseRI	GAGGAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	16, 346
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	40, 249, 427
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	62, 265
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	40, 249, 427
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	3 cut(s)	43, 252, 430
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	40, 249, 427
BstNSI	RCATGY	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	55, 103
CviAII	CATG	5 cut(s)	46, 112, 235, 280, 431
CviJI	RGCY	6 cut(s)	69, 149, 217, 308, 396, 421
CviKI_1	RGCY	6 cut(s)	69, 149, 217, 308, 396, 421
CviQI	GTAC	2 cut(s)	55, 103
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	42, 251, 429
DpnII	GATC	3 cut(s)	40, 249, 427
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	5 cut(s)	49, 115, 238, 283, 434
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	5 cut(s)	45, 111, 234, 279, 430
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	2 cut(s)	422, 445
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	49, 115, 238, 283, 434
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	412
HpaI	GTTAAC	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	231, 302
Hpy188III	TCNNGA	3 cut(s)	97, 274, 416
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	5 cut(s)	49, 115, 238, 283, 434
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	40, 249, 427
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	4 cut(s)	43, 246, 308, 378
MaeI	CTAG	2 cut(s)	422, 445
MaeII	ACGT	1 cut(s)	266
MalI	GATC	3 cut(s)	42, 251, 429
MboI	GATC	3 cut(s)	40, 249, 427
MboII	GAAGA	5 cut(s)	85, 127, 215, 250, 386
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	100, 169, 172, 304
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	149
NdeII	GATC	3 cut(s)	40, 249, 427
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	5 cut(s)	49, 115, 238, 283, 434
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	45
Psp1406I	AACGTT	1 cut(s)	266
RsaI	GTAC	2 cut(s)	56, 104
RsaNI	GTAC	2 cut(s)	55, 103
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	40, 249, 427
SchI	GAGTC	1 cut(s)	406
SetI	ASST	8 cut(s)	71, 82, 219, 269, 297, 310, 315, 423
SspMI	CTAG	2 cut(s)	422, 445
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	128, 160, 251
Van91I	CCANNNNNTGG	1 cut(s)	16
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	422, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.