Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

4434850 .. 4435839

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTATCACAGAAAACCAGTCGGCTGATCACGAAGAAGAAAAGCTTAGTGATGAGTGCAAGGCCCACCTTCTTTCTCTTCCAAAAGAGAAGGGCTGGAGAACCCTTCACCAATATCAATTCCAGGGCTTCTGGTGCCAAGCAGCTGAAATCCAATCCATAATGGCTTTCCAGAACCACTTCCAAGCTAGTGACTCCGACGTAGTCTTGGCCAGCATCCCAAAATCTGGCACAACATGGTTAAAAGCCTTGGCTTTTGCTGTCGTGAACCGACACCGTTTCGACATCAAGAGCCATCCCTTGCTCACTTCCAACCCTCATCATCTTGTGCCATTCCTCGAGTACAATCTTTATGCAGACAACCAACTTCCTGATCTCTCCAAATTTCCTGAGCCACGACTGTTTGGGACACACGTCCCGTATCCTTCGTTGGGTACAATCAAAAAGTCCAACTGTAAGATAGTTTATATCTGCAGAAACCCATTCGACACATTTGTTTCTACTTGGCATTTCATCAACAAAGGGAAGCCACAGTCTCAAGCTCCAATGTTGCTTGAGGAGGCCTTTGATATGTATTGCAAAGGCATCATTGGGTTTGGTCCATTTTGGGAGCACATGTTGGGGTACTGGAAAGAGAGCTTGAACAGACCCGACAAAGTCTTGTTCTTGAAATACGAGGACATGAAGGAGGATGGTGCATTTCACTTGAAAAGATTGGCAAAGTTTTTGGAGTACCCTTTTACTCTGGAAGAGGAGAGAAATGGGGTGATTCAAGACATAGAAAAGCTCTGTTCTTTTGAGACCATGAAGAAATTGGAGGTGAATAAAAGTGGCATGTTTGTCAAGAACTTTGAGAATAAGAGCCTCTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGAACCCTAAGATGGCGGAGAGATTGTCCAAAGTTATAGAAGAAAGGTTGGGTGGATCTGGTTTGCGATTCAATGTGTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

330

Amino Acids

38.19

Weight (kDa)

7.19

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	65 - 322	1.8e-69	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	853
AfaI	GTAC	4 cut(s)	344, 436, 626, 734
AfiI	CCNNNNNNNGG	3 cut(s)	227, 431, 916
AflIII	ACRYGT	2 cut(s)	412, 615
AgsI	TTSAA	6 cut(s)	643, 670, 709, 773, 907, 976
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	7 cut(s)	46, 146, 188, 542, 639, 787, 878
AluI	AGCT	7 cut(s)	46, 146, 188, 542, 639, 787, 878
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	2 cut(s)	540, 794
AlwI	GGATC	1 cut(s)	967
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	63, 210, 561
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	64, 599
AsuHPI	GGTGA	3 cut(s)	101, 778, 832
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	3 cut(s)	303, 686, 910
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	540, 794
BfaI	CTAG	2 cut(s)	189, 988
BfmI	CTRYAG	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	64, 599
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	225, 594
BoxI	GACNNNNGTC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	2 cut(s)	390, 879
BpuEI	CTTGAG	2 cut(s)	522, 575
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	2 cut(s)	124, 249
BsaXI	ACNNNNNCTCC	6 cut(s)	602, 632, 879, 909, 914, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 431, 916
Bse1I	ACTGG	2 cut(s)	19, 632
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	124, 249
BseGI	GGATG	3 cut(s)	216, 295, 697
BseLI	CCNNNNNNNGG	3 cut(s)	227, 431, 916
BseMII	CTCAG	2 cut(s)	381, 870
BseNI	ACTGG	2 cut(s)	19, 632
BseRI	GAGGAG	2 cut(s)	572, 767
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	3 cut(s)	65, 212, 563
BshNI	GGYRCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	401, 421
BslI	CCNNNNNNNGG	3 cut(s)	227, 431, 916
BsmAI	GTCTC	2 cut(s)	540, 794
BsmFI	GGGAC	2 cut(s)	401, 421
BsnI	GGCC	3 cut(s)	65, 212, 563
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	28, 373, 959
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	3 cut(s)	65, 212, 563
BspCNI	CTCAG	2 cut(s)	382, 871
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	967
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	19, 632
BssECI	CCNNGG	2 cut(s)	124, 249
BssMI	GATC	3 cut(s)	28, 373, 959
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	4 cut(s)	278, 402, 455, 534
Bst6I	CTCTTC	3 cut(s)	84, 744, 872
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	4 cut(s)	47, 390, 879, 912
BstF5I	GGATG	3 cut(s)	216, 295, 697
BstKTI	GATC	3 cut(s)	31, 376, 962
BstMAI	GTCTC	2 cut(s)	540, 794
BstMBI	GATC	3 cut(s)	28, 373, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	619, 838
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	959
BstYI	RGATCY	1 cut(s)	959
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	65, 212, 563
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	216, 295, 697
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	64, 599
Csp6I	GTAC	4 cut(s)	343, 435, 625, 733
CviAII	CATG	5 cut(s)	237, 616, 682, 805, 835
CviQI	GTAC	4 cut(s)	343, 435, 625, 733
DdeI	CTNAG	4 cut(s)	47, 390, 879, 912
DpnI	GATC	3 cut(s)	30, 375, 961
DpnII	GATC	3 cut(s)	28, 373, 959
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	84, 744, 872
EarI	CTCTTC	3 cut(s)	84, 744, 872
EciI	GGCGGA	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	853
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	240, 619, 685, 808, 838
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 851, 883
FaqI	GGGAC	2 cut(s)	401, 421
FatI	CATG	5 cut(s)	236, 615, 681, 804, 834
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	3 cut(s)	203, 282, 704
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	189, 988
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	65, 212, 563
Hin1II	CATG	5 cut(s)	240, 619, 685, 808, 838
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	194, 769, 972
HpaI	GTTAAC	1 cut(s)	898
HphI	GGTGA	3 cut(s)	101, 778, 832
Hpy166II	GTNNAC	2 cut(s)	268, 898
Hpy188I	TCNGA	2 cut(s)	199, 872
Hpy8I	GTNNAC	2 cut(s)	268, 898
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	5 cut(s)	80, 85, 116, 435, 679
HpyCH4III	ACNGT	4 cut(s)	278, 402, 455, 534
HpyCH4IV	ACGT	2 cut(s)	201, 414
HpyCH4V	TGCA	5 cut(s)	60, 356, 474, 579, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	4 cut(s)	47, 390, 879, 912
HpySE526I	ACGT	2 cut(s)	201, 414
Hsp92II	CATG	5 cut(s)	240, 619, 685, 808, 838
Ksp22I	TGATCA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	28, 373, 959
LmnI	GCTCC	2 cut(s)	547, 610
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	225, 594
MaeI	CTAG	2 cut(s)	189, 988
MaeII	ACGT	2 cut(s)	201, 414
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	30, 375, 961
MboI	GATC	3 cut(s)	28, 373, 959
MboII	GAAGA	7 cut(s)	47, 50, 71, 761, 820, 859, 956
MflI	RGATCY	1 cut(s)	959
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	3 cut(s)	119, 383, 812
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	3 cut(s)	222, 336, 474
Mox20I	TGGCCA	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	2 cut(s)	242, 897
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	28, 373, 959
NlaIII	CATG	5 cut(s)	240, 619, 685, 808, 838
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	2 cut(s)	619, 838
PaeR7I	CTCGAG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	563
PciI	ACATGT	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	769, 972
PflFI	GACNNNGTC	2 cut(s)	203, 656
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	615
PshAI	GACNNNNGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	64, 599
PspXI	VCTCGAGB	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	959
PsyI	GACNNNGTC	2 cut(s)	203, 656
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	4 cut(s)	344, 436, 626, 734
RsaNI	GTAC	4 cut(s)	343, 435, 625, 733
SaqAI	TTAA	2 cut(s)	242, 897
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	28, 373, 959
Sau96I	GGNCC	2 cut(s)	64, 599
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	225, 594
SfcI	CTRYAG	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	338, 537, 554
SmoI	CTYRAG	3 cut(s)	338, 537, 554
Sse9I	AATT	3 cut(s)	119, 383, 812
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	1 cut(s)	920
SspMI	CTAG	2 cut(s)	189, 988
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	278, 402, 455, 534
TaiI	ACGT	2 cut(s)	204, 417
TaqI	TCGA	3 cut(s)	282, 339, 486
TasI	AATT	3 cut(s)	119, 383, 812
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	769, 972
Tru1I	TTAA	2 cut(s)	242, 897
Tru9I	TTAA	2 cut(s)	242, 897
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	502, 698, 821
Tth111I	GACNNNGTC	2 cut(s)	203, 656
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	2 cut(s)	619, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	2 cut(s)	189, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.