Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

22695313 .. 22696328

Gene Structure 1016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACTGAAAATCAACCTGCTGACGATGAAGAAAAGAGCCTTAGTAATGAGTGTAAGGAACTCCTTCTTTCTCTCCCCAAAGAAAGAGGTTGGAGAACCCTTCACCAATATCAATTCCAAGGCTTTTGGTGCGCATCAGCAGCAATCGAAGCCGTAATCTCATTCCAAAAGCACTTCCAAGCTAGGGACTCCGACATAGTTGTGGCCAGCCTACCCAAATCCGGCACCATGTGGTTGAAAGCCTTGACTTTTGCTATTGTGAATCGACACCTTCCGGATCTCTCCGAGTTTCCTGAGCCAAGACTCTTTGGGACTCATATTCCTTTTCCTTCTTTGGGTACAATCACAGAGTCTAACTGTAAGATCGTTTATGTTTGCAGAAACCCATTTGACACATTTATTTCTTCTTGGCATTTCTTTGACAAAGTCAGGCCGCAACATCAAGCTCCATTGTCCCTTGATGAGGCCTTTGATATGTATTGCCGAGGCATGAGTGCGTTTGGTCCATGGTGGGATCACATTTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTCAGAATATGTTATTCTTGAAGTACGAGGACATGGCGGAAGATGTTGTGTTGCACTTGAAAAGATTGGCCAAGTTTTTAGAGTATCCTTTCACTTTGGAGGAAGAGAGAGATGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGACTTTGGAGATCAACAAAACTGGCACGACTGTCAAGAATGTTGAGAATAAGAACATGTTCAGAAAAGCTGAGGTGGGAGATTGGGTAAACTATTTGACCCCTAAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAACCTGGGCGGTTCAGGCTTGACATTCAAAGTGATTTCTGAGGTAGCAAATCCTGTCGAGCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

306

Amino Acids

35.41

Weight (kDa)

5.59

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	93 - 290	1.6e-54	Sulfotransferase domain
Sulfotransfer_3	PF13469	119 - 216	2.2e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	3 cut(s)	434, 590, 861
AclWI	GGATC	2 cut(s)	285, 522
AcoI	YGGCCR	2 cut(s)	204, 621
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	340, 530, 578
AfiI	CCNNNNNNNGG	5 cut(s)	184, 221, 335, 463, 820
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	6 cut(s)	238, 547, 574, 613, 677, 880
AjnI	CCWGG	1 cut(s)	855
AluBI	AGCT	5 cut(s)	182, 446, 543, 691, 782
AluI	AGCT	5 cut(s)	182, 446, 543, 691, 782
Alw26I	GTCTC	2 cut(s)	544, 698
AlwI	GGATC	2 cut(s)	285, 522
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	4 cut(s)	204, 431, 465, 621
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	63, 770
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	503
BalI	TGGCCA	2 cut(s)	206, 623
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	684, 719
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	659, 814
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	544, 698
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	141, 434
BlsI	GCNGC	2 cut(s)	142, 435
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	857
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	684, 719
Bpu10I	CCTNAGC	2 cut(s)	294, 783
BsaI	GGTCTC	2 cut(s)	544, 698
BsaJI	CCNNGG	4 cut(s)	118, 484, 506, 856
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	783, 813, 818, 848
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 221, 335, 463, 820
Bse1I	ACTGG	2 cut(s)	536, 739
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	4 cut(s)	118, 484, 506, 856
BseLI	CCNNNNNNNGG	5 cut(s)	184, 221, 335, 463, 820
BseMII	CTCAG	4 cut(s)	285, 569, 774, 882
BseNI	ACTGG	2 cut(s)	536, 739
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	4 cut(s)	206, 433, 467, 623
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	222, 275
BslFI	GGGAC	3 cut(s)	200, 325, 439
BslI	CCNNNNNNNGG	5 cut(s)	184, 221, 335, 463, 820
BsmAI	GTCTC	2 cut(s)	544, 698
BsmFI	GGGAC	3 cut(s)	200, 325, 439
BsnI	GGCC	4 cut(s)	206, 433, 467, 623
Bso31I	GGTCTC	2 cut(s)	544, 698
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	277, 363, 514, 723
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	3 cut(s)	434, 590, 861
BspANI	GGCC	4 cut(s)	206, 433, 467, 623
BspCNI	CTCAG	4 cut(s)	286, 568, 775, 883
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	285, 522
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	544, 698
BsrI	ACTGG	2 cut(s)	536, 739
BssECI	CCNNGG	4 cut(s)	118, 484, 506, 856
BssMI	GATC	4 cut(s)	277, 363, 514, 723
BssT1I	CCWWGG	2 cut(s)	118, 506
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	2 cut(s)	359, 745
Bst6I	CTCTTC	2 cut(s)	542, 651
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	6 cut(s)	41, 294, 555, 783, 816, 891
BstDSI	CCRYGG	1 cut(s)	506
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	280, 366, 517, 726
BstMAI	GTCTC	2 cut(s)	544, 698
BstMBI	GATC	4 cut(s)	277, 363, 514, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 867
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	855
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	2 cut(s)	684, 719
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	4 cut(s)	206, 433, 467, 623
BtgI	CCRYGG	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	339, 529, 577
CviAII	CATG	6 cut(s)	229, 490, 507, 586, 709, 769
CviQI	GTAC	3 cut(s)	339, 529, 577
DdeI	CTNAG	6 cut(s)	41, 294, 555, 783, 816, 891
DpnI	GATC	4 cut(s)	279, 365, 516, 725
DpnII	GATC	4 cut(s)	277, 363, 514, 723
DraIII	CACNNNGTG	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	204, 621
Eam1104I	CTCTTC	2 cut(s)	542, 651
EarI	CTCTTC	2 cut(s)	542, 651
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	118, 506
Eco147I	AGGCCT	1 cut(s)	467
Eco31I	GGTCTC	2 cut(s)	544, 698
Eco47I	GGWCC	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	118, 506
ErhI	CCWWGG	2 cut(s)	118, 506
FaeI	CATG	6 cut(s)	232, 493, 510, 589, 712, 772
FaqI	GGGAC	3 cut(s)	200, 325, 439
FatI	CATG	6 cut(s)	228, 489, 506, 585, 708, 768
Fnu4HI	GCNGC	2 cut(s)	141, 434
Fsp4HI	GCNGC	2 cut(s)	141, 434
FspAI	RTGCGCAY	1 cut(s)	133
FspBI	CTAG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	141, 434
HaeIII	GGCC	4 cut(s)	206, 433, 467, 623
HapII	CCGG	2 cut(s)	222, 275
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	6 cut(s)	232, 493, 510, 589, 712, 772
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	188, 262, 303, 313, 350
HpaII	CCGG	2 cut(s)	222, 275
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	5 cut(s)	193, 286, 558, 776, 892
Hpy188III	TCNNGA	4 cut(s)	275, 293, 571, 748
Hpy8I	GTNNAC	1 cut(s)	802
HpyAV	CCTTC	4 cut(s)	74, 110, 281, 339
HpyCH4III	ACNGT	2 cut(s)	359, 745
HpyCH4V	TGCA	2 cut(s)	378, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 867
HpyF3I	CTNAG	6 cut(s)	41, 294, 555, 783, 816, 891
Hsp92II	CATG	6 cut(s)	232, 493, 510, 589, 712, 772
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	277, 363, 514, 723
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	183
MalI	GATC	4 cut(s)	279, 365, 516, 725
MboI	GATC	4 cut(s)	277, 363, 514, 723
MboII	GAAGA	8 cut(s)	41, 396, 559, 605, 668, 689, 724, 860
MflI	RGATCY	1 cut(s)	277
MlsI	TGGCCA	2 cut(s)	206, 623
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	2 cut(s)	206, 623
MlyI	GAGTC	4 cut(s)	182, 297, 307, 359
MmeI	TCCRAC	2 cut(s)	71, 216
MnlI	CCTC	9 cut(s)	80, 457, 479, 564, 574, 646, 778, 817, 886
Mox20I	TGGCCA	2 cut(s)	206, 623
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	2 cut(s)	63, 770
MscI	TGGCCA	2 cut(s)	206, 623
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	2 cut(s)	206, 623
MspI	CCGG	2 cut(s)	222, 275
MspR9I	CCNGG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 867
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	277, 363, 514, 723
NlaIII	CATG	6 cut(s)	232, 493, 510, 589, 712, 772
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	509
NsbI	TGCGCA	1 cut(s)	133
NspI	RCATGY	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	467
PciI	ACATGT	1 cut(s)	768
PdmI	GAANNNNTTC	2 cut(s)	63, 770
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	142, 435
PleI	GAGTC	4 cut(s)	182, 297, 307, 358
PpsI	GAGTC	4 cut(s)	182, 297, 307, 358
PscI	ACATGT	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	3 cut(s)	340, 530, 578
RsaNI	GTAC	3 cut(s)	339, 529, 577
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	141, 434
Sau3AI	GATC	4 cut(s)	277, 363, 514, 723
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	4 cut(s)	182, 297, 307, 359
ScrFI	CCNGG	1 cut(s)	857
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	3 cut(s)	434, 590, 861
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	855
StyI	CCWWGG	2 cut(s)	118, 506
TaaI	ACNGT	2 cut(s)	359, 745
TaqI	TCGA	3 cut(s)	147, 265, 909
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	42, 725
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	461
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	2 cut(s)	63, 770
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.