Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

45752765 .. 45753775

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTGAAAATCAGCCGCCTGACCATGAAGAAAAAAACCTCAGCAGTGAGTGTAAGGAACTCCTTTCTGTCCCCAAAGAAAGAGGCTGGATAACCCATCTGCGCCAATATCAATTCCAAGGCTTTTGGTGCCCATCAGCAGAAGTATTCCAAGCCGTAATCTCTTTCCAAAAGCACTTCCATGCTAAAGACTCCGACGTGGTTGTGGCCAGCCTACCCAAATCCGGCACAACATGGTTAAAAGCCTTGACTTTTGCTATTTTGAATCGACACCGTTTCGAAATACAGACCCATCCCTTGCTCACTTCCAACTCTCACAATCTTGTGCCATTTTTTGAGTTGGATCTCTATACAAGCAACCTAGTTCCTGATTTCTCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCCTTTCCATCTTTGGGTACAATTAAAGAATCCAATTCAAAGATCATTTATGTTTGCAGAAATCCATTCGACTCATTTGTTTCTGCCTGGCATTTCGTTAACGAAGTCCGTCCGCAATCTTCATCTCCATTGTCGCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGAGTGCGTTTGGTCCATTTTGGGATCACATTTTGGGGTACTGGAAAGAGAACTCGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGGAAGATGGTGTAGTTCACTTGAAGGCATTGGCTAAGTTTTTAGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGCAATAGCAAAGCTCTGTTCTTTTGAGGCCATGAAAAAGTTGGAGATCAACAAAACTGGAACGTTTGTCATGAACTGGGAGAACAAGACCCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTAAGATGGAGGAGAGAATGTCTAAAGTCATAGAAGAAAAGTTGGGTGGTTCAGGCTTGACTTTCAAAGTGATTCCCGAGCTAGCAGATCCTGTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

336

Amino Acids

38.7

Weight (kDa)

5.92

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	64 - 322	2.9e-68	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	2 cut(s)	17, 530
AclI	AACGTT	1 cut(s)	836
AclWI	GGATC	3 cut(s)	351, 618, 992
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	3 cut(s)	436, 626, 674
AfiI	CCNNNNNNNGG	3 cut(s)	224, 431, 916
AgsI	TTSAA	6 cut(s)	265, 456, 670, 709, 773, 976
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	3 cut(s)	787, 878, 991
AluI	AGCT	3 cut(s)	787, 878, 991
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	3 cut(s)	351, 618, 992
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	3 cut(s)	207, 561, 801
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	599
AsuII	TTCGAA	1 cut(s)	279
AsuNHI	GCTAGC	1 cut(s)	991
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	129
BbvCI	CCTCAGC	2 cut(s)	41, 879
BccI	CCATC	6 cut(s)	105, 142, 300, 433, 686, 910
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	362, 992
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	859
BmtI	GCTAGC	1 cut(s)	995
BmuI	ACTGGG	1 cut(s)	859
Bpu10I	CCTNAGC	3 cut(s)	41, 390, 879
Bpu14I	TTCGAA	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	2 cut(s)	118, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	879, 909, 914, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 431, 916
Bse1I	ACTGG	4 cut(s)	632, 835, 854, 1006
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	118, 580
BseGI	GGATG	2 cut(s)	292, 377
BseLI	CCNNNNNNNGG	3 cut(s)	224, 431, 916
BseMII	CTCAG	4 cut(s)	55, 381, 735, 870
BseNI	ACTGG	4 cut(s)	632, 835, 854, 1006
BseRI	GAGGAG	4 cut(s)	761, 764, 767, 935
BseSI	GKGCMC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	209, 563, 803
BshNI	GGYRCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	224, 431, 916
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	209, 563, 803
Bso31I	GGTCTC	1 cut(s)	640
BsoBI	CYCGRG	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	343, 459, 610, 819, 997
BspACI	CCGC	2 cut(s)	17, 530
BspANI	GGCC	3 cut(s)	209, 563, 803
BspCNI	CTCAG	4 cut(s)	54, 382, 736, 871
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	995
BspPI	GGATC	3 cut(s)	351, 618, 992
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	640
BsrI	ACTGG	4 cut(s)	632, 835, 854, 1006
BssECI	CCNNGG	2 cut(s)	118, 580
BssMI	GATC	5 cut(s)	343, 459, 610, 819, 997
BssT1I	CCWWGG	2 cut(s)	118, 580
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	275, 764
Bst6I	CTCTTC	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	211, 993
BstDEI	CTNAG	6 cut(s)	41, 390, 720, 744, 879, 912
BstF5I	GGATG	2 cut(s)	292, 377
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	346, 462, 613, 822, 1000
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	5 cut(s)	343, 459, 610, 819, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	343, 997
BstYI	RGATCY	2 cut(s)	343, 997
BsuRI	GGCC	3 cut(s)	209, 563, 803
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	292, 377
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 741
Cac8I	GCNNGC	2 cut(s)	211, 993
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	435, 625, 673
CviAII	CATG	7 cut(s)	26, 182, 234, 586, 682, 805, 844
CviQI	GTAC	3 cut(s)	435, 625, 673
DdeI	CTNAG	6 cut(s)	41, 390, 720, 744, 879, 912
DpnI	GATC	5 cut(s)	345, 461, 612, 821, 999
DpnII	GATC	5 cut(s)	343, 459, 610, 819, 997
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco130I	CCWWGG	2 cut(s)	118, 580
Eco147I	AGGCCT	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	118, 580
ErhI	CCWWGG	2 cut(s)	118, 580
FaeI	CATG	7 cut(s)	29, 185, 237, 589, 685, 808, 847
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	7 cut(s)	25, 181, 233, 585, 681, 804, 843
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	2 cut(s)	279, 364
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	362, 992
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	209, 563, 803
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	7 cut(s)	29, 185, 237, 589, 685, 808, 847
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	517, 898
HindII	GTYRAC	2 cut(s)	517, 898
HinfI	GANTC	6 cut(s)	191, 265, 399, 446, 488, 982
HpaI	GTTAAC	2 cut(s)	517, 898
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	3 cut(s)	517, 703, 898
Hpy188I	TCNGA	2 cut(s)	196, 872
Hpy188III	TCNNGA	5 cut(s)	368, 389, 667, 844, 986
Hpy8I	GTNNAC	3 cut(s)	517, 703, 898
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	679, 703
HpyCH4III	ACNGT	2 cut(s)	275, 764
HpyCH4IV	ACGT	2 cut(s)	198, 836
HpyCH4V	TGCA	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	6 cut(s)	41, 390, 720, 744, 879, 912
HpySE526I	ACGT	2 cut(s)	198, 836
Hsp92II	CATG	7 cut(s)	29, 185, 237, 589, 685, 808, 847
HspAI	GCGC	1 cut(s)	103
KspAI	GTTAAC	2 cut(s)	517, 898
Kzo9I	GATC	5 cut(s)	343, 459, 610, 819, 997
MaeI	CTAG	2 cut(s)	362, 992
MaeII	ACGT	2 cut(s)	198, 836
MalI	GATC	5 cut(s)	345, 461, 612, 821, 999
MboI	GATC	5 cut(s)	343, 459, 610, 819, 997
MboII	GAAGA	5 cut(s)	41, 528, 655, 701, 956
MflI	RGATCY	2 cut(s)	343, 997
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	3 cut(s)	113, 438, 451
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	185, 393, 482
MmeI	TCCRAC	4 cut(s)	219, 321, 333, 795
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	4 cut(s)	239, 441, 516, 897
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	5 cut(s)	343, 459, 610, 819, 997
NheI	GCTAGC	1 cut(s)	991
NlaIII	CATG	7 cut(s)	29, 185, 237, 589, 685, 808, 847
NlaIV	GGNNCC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	279
PagI	TCATGA	1 cut(s)	843
PceI	AGGCCT	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	265, 446, 982
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	3 cut(s)	185, 393, 482
PpsI	GAGTC	3 cut(s)	185, 393, 482
Psp1406I	AACGTT	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	599
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	2 cut(s)	343, 997
RsaI	GTAC	3 cut(s)	436, 626, 674
RsaNI	GTAC	3 cut(s)	435, 625, 673
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	239, 441, 516, 897
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	5 cut(s)	343, 459, 610, 819, 997
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	3 cut(s)	185, 393, 482
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	42, 201, 363, 652, 789, 839, 880, 885, 993
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	113, 438, 451
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	2 cut(s)	17, 530
SspMI	CTAG	2 cut(s)	362, 992
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	2 cut(s)	118, 580
TaaI	ACNGT	2 cut(s)	275, 764
TaiI	ACGT	2 cut(s)	201, 839
TaqI	TCGA	4 cut(s)	268, 279, 486, 641
TasI	AATT	3 cut(s)	113, 438, 451
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	265, 446, 982
Tru1I	TTAA	4 cut(s)	239, 441, 516, 897
Tru9I	TTAA	4 cut(s)	239, 441, 516, 897
TscAI	CASTG	2 cut(s)	52, 748
TspDTI	ATGAA	5 cut(s)	42, 528, 698, 821, 860
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	2 cut(s)	52, 748
VpaK11BI	GGWCC	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XspI	CTAG	2 cut(s)	362, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.