Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011915.1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

32946 .. 33965

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011915.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgagtgaaaatcagccggctgagcatgaaggaaaaaacctcagtagtgagtgtaaggaactccttctttctctcccaaaagaaagaggctggatagcccttcatgaatatcaataccaaggcttctggtgcccaacagcagaaatattcgcagccataatcgctttccaaaagcacttccaagctagggactccgacatagttgtggccagcttaccgaaatccggcaccacatggttgaaagccttgacttttgctattgtgaatcgacaccgtttcgaattaaagacccatcccttgctcacttccaactctcataatcttgtgccattctttgatttggatctctatctaaacaacctagttcctgatttctcatccaagtttcctgagccaagaagactctttgcgacccatattccttttccttctttgggtacaattaaagagtccaattgtaagatcgtttatgtttgcagaaacccatttgactcatttgtttcctattggcatttcattaaaaaagtcaggccacaatctttacctccattgtcccttgatgaggcctttgatatgtattgccaaggcatggatgggtatggtccattttgggatcacattttggggtactggaaagagagcttgaggagacctaacaatgtgttattcttcaagtatgaggacataaagaaagatgatgtatttcacttgaaaacattggctaagtttttagactgccctttcactgaggaggaggagagaaacggtgtgattgaagatatagcaaagctttgttcttttgagaccatgaagaagttggagatcaacaaaactggaacgtttaccctgaacatggagaataagaacctgttcagaaaagctgaggtgggagattgggttaactatttgacccctatgatggagaagagaatgtccaaagtcatagaagaaaagttgggtggttcaggcttgacattcaaagtgattcccgagctagcagatcctgtccagcagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

339

Amino Acids

39.35

Weight (kDa)

6.38

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	129, 227
AccB7I	CCANNNNNTGG	1 cut(s)	589
AclI	AACGTT	1 cut(s)	839
AclWI	GGATC	3 cut(s)	351, 621, 995
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	2 cut(s)	439, 629
AfiI	CCNNNNNNNGG	7 cut(s)	187, 224, 434, 562, 589, 853, 919
AgsI	TTSAA	5 cut(s)	241, 673, 712, 776, 979
AluBI	AGCT	6 cut(s)	185, 213, 642, 790, 881, 994
AluI	AGCT	6 cut(s)	185, 213, 642, 790, 881, 994
Alw26I	GTCTC	2 cut(s)	643, 797
AlwI	GGATC	3 cut(s)	351, 621, 995
AlwNI	CAGNNNCTG	1 cut(s)	1004
Ama87I	CYCGRG	1 cut(s)	989
AoxI	GGCC	3 cut(s)	207, 530, 564
ApeKI	GCWGC	1 cut(s)	152
Asp700I	GAANNNNTTC	2 cut(s)	63, 869
AspS9I	GGNCC	1 cut(s)	602
AsuII	TTCGAA	1 cut(s)	279
AsuNHI	GCTAGC	1 cut(s)	994
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	129, 227
BbsI	GAAGAC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	3 cut(s)	300, 587, 913
BcoDI	GTCTC	2 cut(s)	643, 797
BfaI	CTAG	4 cut(s)	186, 362, 995, 1018
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	131, 229
BmtI	GCTAGC	1 cut(s)	998
BpiI	GAAGAC	1 cut(s)	406
Bpu10I	CCTNAGC	2 cut(s)	390, 882
Bpu1102I	GCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	664
BsaBI	GATNNNNATC	2 cut(s)	342, 348
BsaI	GGTCTC	2 cut(s)	643, 797
BsaJI	CCNNGG	2 cut(s)	118, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 224, 434, 562, 589, 853, 919
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	635, 838
Bse8I	GATNNNNATC	2 cut(s)	342, 348
BseDI	CCNNGG	2 cut(s)	118, 583
BseGI	GGATG	3 cut(s)	292, 377, 598
BseJI	GATNNNNATC	2 cut(s)	342, 348
BseLI	CCNNNNNNNGG	7 cut(s)	187, 224, 434, 562, 589, 853, 919
BseMII	CTCAG	5 cut(s)	12, 55, 381, 738, 873
BseNI	ACTGG	2 cut(s)	635, 838
BseRI	GAGGAG	4 cut(s)	661, 764, 767, 770
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	209, 532, 566
BshNI	GGYRCC	2 cut(s)	129, 227
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	2 cut(s)	17, 225
BslFI	GGGAC	2 cut(s)	203, 538
BslI	CCNNNNNNNGG	7 cut(s)	187, 224, 434, 562, 589, 853, 919
BsmAI	GTCTC	2 cut(s)	643, 797
BsmFI	GGGAC	2 cut(s)	203, 538
BsnI	GGCC	3 cut(s)	209, 532, 566
Bso31I	GGTCTC	2 cut(s)	643, 797
BsoBI	CYCGRG	1 cut(s)	989
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	343, 462, 613, 822, 1000
Bsp1720I	GCTNAGC	1 cut(s)	21
BspANI	GGCC	3 cut(s)	209, 532, 566
BspCNI	CTCAG	5 cut(s)	13, 54, 382, 739, 874
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	131, 229
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	3 cut(s)	351, 621, 995
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	2 cut(s)	129, 227
BspTNI	GGTCTC	2 cut(s)	643, 797
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	635, 838
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	118, 583
BssMI	GATC	5 cut(s)	343, 462, 613, 822, 1000
BssT1I	CCWWGG	2 cut(s)	118, 583
Bst4CI	ACNGT	2 cut(s)	275, 767
Bst6I	CTCTTC	1 cut(s)	920
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	18, 211, 996
BstDEI	CTNAG	6 cut(s)	21, 41, 390, 723, 747, 882
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	3 cut(s)	292, 377, 598
BstKTI	GATC	5 cut(s)	346, 465, 616, 825, 1003
BstMAI	GTCTC	2 cut(s)	643, 797
BstMBI	GATC	5 cut(s)	343, 462, 613, 822, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 129, 161
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	343, 1000
BstYI	RGATCY	2 cut(s)	343, 1000
BsuRI	GGCC	3 cut(s)	209, 532, 566
BtsCI	GGATG	3 cut(s)	292, 377, 598
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	3 cut(s)	18, 211, 996
CaiI	CAGNNNCTG	1 cut(s)	1004
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	438, 628
CviAII	CATG	6 cut(s)	26, 104, 234, 589, 808, 853
CviQI	GTAC	2 cut(s)	438, 628
DdeI	CTNAG	6 cut(s)	21, 41, 390, 723, 747, 882
DpnI	GATC	5 cut(s)	345, 464, 615, 824, 1002
DpnII	GATC	5 cut(s)	343, 462, 613, 822, 1000
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
Eco130I	CCWWGG	2 cut(s)	118, 583
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	2 cut(s)	643, 797
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	989
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoT14I	CCWWGG	2 cut(s)	118, 583
ErhI	CCWWGG	2 cut(s)	118, 583
FaeI	CATG	6 cut(s)	29, 107, 237, 592, 811, 856
FaqI	GGGAC	2 cut(s)	203, 538
FatI	CATG	6 cut(s)	25, 103, 233, 588, 807, 852
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	3 cut(s)	279, 364, 605
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	4 cut(s)	186, 362, 995, 1018
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	209, 532, 566
HapII	CCGG	2 cut(s)	17, 225
Hin1II	CATG	6 cut(s)	29, 107, 237, 592, 811, 856
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	6 cut(s)	191, 265, 402, 449, 491, 985
HpaI	GTTAAC	1 cut(s)	901
HpaII	CCGG	2 cut(s)	17, 225
Hpy166II	GTNNAC	2 cut(s)	843, 901
Hpy188I	TCNGA	2 cut(s)	196, 875
Hpy188III	TCNNGA	4 cut(s)	104, 368, 389, 989
Hpy8I	GTNNAC	2 cut(s)	843, 901
HpyAV	CCTTC	4 cut(s)	23, 74, 110, 438
HpyCH4III	ACNGT	2 cut(s)	275, 767
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 129, 161
HpyF3I	CTNAG	6 cut(s)	21, 41, 390, 723, 747, 882
HpySE526I	ACGT	1 cut(s)	839
Hsp92II	CATG	6 cut(s)	29, 107, 237, 592, 811, 856
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	901
Kzo9I	GATC	5 cut(s)	343, 462, 613, 822, 1000
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	4 cut(s)	186, 362, 995, 1018
MaeII	ACGT	1 cut(s)	839
MalI	GATC	5 cut(s)	345, 464, 615, 824, 1002
MboI	GATC	5 cut(s)	343, 462, 613, 822, 1000
MboII	GAAGA	6 cut(s)	411, 661, 788, 823, 937, 959
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	2 cut(s)	343, 1000
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	3 cut(s)	281, 441, 454
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	4 cut(s)	185, 396, 458, 485
MmeI	TCCRAC	3 cut(s)	219, 333, 798
Mox20I	TGGCCA	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	16
MroXI	GAANNNNTTC	2 cut(s)	63, 869
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	4 cut(s)	284, 444, 519, 900
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	2 cut(s)	17, 225
MunI	CAATTG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	22, 129, 161
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	5 cut(s)	343, 462, 613, 822, 1000
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	6 cut(s)	29, 107, 237, 592, 811, 856
NlaIV	GGNNCC	2 cut(s)	131, 229
NspV	TTCGAA	1 cut(s)	279
PagI	TCATGA	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	566
PdiI	GCCGGC	1 cut(s)	18
PdmI	GAANNNNTTC	2 cut(s)	63, 869
PfeI	GAWTC	2 cut(s)	265, 985
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	4 cut(s)	185, 396, 457, 485
PpsI	GAGTC	4 cut(s)	185, 396, 457, 485
Psp1406I	AACGTT	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	131, 229
PspPI	GGNCC	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	1004
PsuI	RGATCY	2 cut(s)	343, 1000
RsaI	GTAC	2 cut(s)	439, 629
RsaNI	GTAC	2 cut(s)	438, 628
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	284, 444, 519, 900
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	5 cut(s)	343, 462, 613, 822, 1000
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	4 cut(s)	185, 396, 458, 485
SduI	GDGCHC	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	3 cut(s)	281, 441, 454
SseBI	AGGCCT	1 cut(s)	566
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	4 cut(s)	186, 362, 995, 1018
StuI	AGGCCT	1 cut(s)	566
StyI	CCWWGG	2 cut(s)	118, 583
TaaI	ACNGT	2 cut(s)	275, 767
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	2 cut(s)	268, 279
TasI	AATT	3 cut(s)	281, 441, 454
TfiI	GAWTC	2 cut(s)	265, 985
Tru1I	TTAA	4 cut(s)	284, 444, 519, 900
Tru9I	TTAA	4 cut(s)	284, 444, 519, 900
TscAI	CASTG	1 cut(s)	751
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	42, 92, 120, 505, 824
TspRI	CASTG	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	2 cut(s)	590, 814
XmnI	GAANNNNTTC	2 cut(s)	63, 869
XspI	CTAG	4 cut(s)	186, 362, 995, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.