Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003600.1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

100164 .. 101156

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003600.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggccatcactgaaaacccaccattagatcatgaagaggaaaaactcagtgatgagtgcaagaaactccttctttctctcccaaaagagaaaggttggagaactcttcacctctttcaattccaaggcttctggtgccaatcagccgaaatccagtccatactcgctttccaaaaccacttccaaactagtgactcggacatagtcttggccagcattccaaaatcaggcaccacatggttaaaagccttgactttcgctattgtaaaccgacgccatttcgcagtctcaaagtcccatcctttactcacttccaatcctcatgatcttgtgcctttccttgagtacaagctctatgcaaacaacccacttcctgacctctccaaatttcctgagccaagactgtttgggacacacattccttatccttctctgagtacaataaaaaagtccaactgtaagattgtttacatttgcagaaacccatttgatacatttgtgtcctcttggcatttcattaacaaagtgaagccacaatctcaagctccgatctctcttgatgaggcctttgatatgtattgcaagggcatagttgggtttggtccgttttgggagcacatgttggggtactggaaagagagcttgaacagacctgacaatgttttgttcttgaagtatgaggacatgaaggaaaatggtgtgtttcagttaatgaaattggcaaattttctggggttcccttttagtttggaggaggagagaggtggtgagattgaggaaatagcaaagctttgtggttttgagaacatgaagaaattggaggtcaatagaactggtaagtctattaagaactttgagaataagaacctatttagaaaagccgaggtgggggattggatgaactatttgacccctaatatggttgaaaggttgtccaaagtccttgaagaaaatttgggaggttcaggtttgaaattcaatgtgcttccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

330

Amino Acids

38.02

Weight (kDa)

7.11

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	135, 230
AcoI	YGGCCR	2 cut(s)	3, 210
AcsI	RAATTY	4 cut(s)	386, 724, 952, 974
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	3 cut(s)	347, 439, 629
AfiI	CCNNNNNNNGG	3 cut(s)	227, 888, 919
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	7 cut(s)	119, 646, 673, 926, 947, 973, 979
AhlI	ACTAGT	1 cut(s)	188
AluBI	AGCT	4 cut(s)	352, 545, 642, 790
AluI	AGCT	4 cut(s)	352, 545, 642, 790
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	3 cut(s)	3, 210, 564
ApoI	RAATTY	4 cut(s)	386, 724, 952, 974
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	101, 779
AvaII	GGWCC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BalI	TGGCCA	2 cut(s)	5, 212
BanI	GGYRCC	2 cut(s)	135, 230
Bbv12I	GWGCWC	1 cut(s)	618
BccI	CCATC	2 cut(s)	14, 306
BcoDI	GTCTC	1 cut(s)	292
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	137, 232, 737
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	362, 525
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	124, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 888, 919
Bse1I	ACTGG	3 cut(s)	154, 635, 838
BseDI	CCNNGG	2 cut(s)	124, 882
BseGI	GGATG	2 cut(s)	298, 903
BseLI	CCNNNNNNNGG	3 cut(s)	227, 888, 919
BseMII	CTCAG	3 cut(s)	61, 384, 425
BseNI	ACTGG	3 cut(s)	154, 635, 838
BseRI	GAGGAG	2 cut(s)	767, 770
BshFI	GGCC	3 cut(s)	5, 212, 566
BshNI	GGYRCC	2 cut(s)	135, 230
BsiHKAI	GWGCWC	1 cut(s)	618
BslFI	GGGAC	2 cut(s)	280, 424
BslI	CCNNNNNNNGG	3 cut(s)	227, 888, 919
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	280, 424
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	5, 212, 566
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	28, 325, 549
BspANI	GGCC	3 cut(s)	5, 212, 566
BspCNI	CTCAG	3 cut(s)	60, 385, 426
BspHI	TCATGA	2 cut(s)	31, 322
BspLI	GGNNCC	3 cut(s)	137, 232, 737
BspT107I	GGYRCC	2 cut(s)	135, 230
BsrI	ACTGG	3 cut(s)	154, 635, 838
BssECI	CCNNGG	2 cut(s)	124, 882
BssMI	GATC	3 cut(s)	28, 325, 549
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	405, 458
Bst6I	CTCTTC	2 cut(s)	30, 111
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	47, 393, 434
BstF5I	GGATG	2 cut(s)	298, 903
BstKTI	GATC	3 cut(s)	31, 328, 552
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	28, 325, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	5, 212, 566
BtsCI	GGATG	2 cut(s)	298, 903
BtsIMutI	CAGTG	2 cut(s)	9, 55
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	2 cut(s)	31, 322
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	346, 438, 628
CviAII	CATG	6 cut(s)	32, 237, 323, 619, 685, 808
CviQI	GTAC	3 cut(s)	346, 438, 628
DdeI	CTNAG	3 cut(s)	47, 393, 434
DpnI	GATC	3 cut(s)	30, 327, 551
DpnII	GATC	3 cut(s)	28, 325, 549
EaeI	YGGCCR	2 cut(s)	3, 210
Eam1104I	CTCTTC	2 cut(s)	30, 111
EarI	CTCTTC	2 cut(s)	30, 111
Eco130I	CCWWGG	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	6 cut(s)	35, 240, 326, 622, 688, 811
FaqI	GGGAC	2 cut(s)	280, 424
FatI	CATG	6 cut(s)	31, 236, 322, 618, 684, 807
FokI	GGATG	2 cut(s)	285, 910
FspBI	CTAG	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	5, 212, 566
HgaI	GACGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	6 cut(s)	35, 240, 326, 622, 688, 811
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	101, 779
Hpy166II	GTNNAC	2 cut(s)	268, 469
Hpy188I	TCNGA	3 cut(s)	199, 435, 549
Hpy188III	TCNNGA	6 cut(s)	32, 323, 374, 392, 557, 670
Hpy8I	GTNNAC	2 cut(s)	268, 469
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	3 cut(s)	80, 438, 682
HpyCH4III	ACNGT	2 cut(s)	405, 458
HpyCH4V	TGCA	4 cut(s)	60, 359, 477, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	3 cut(s)	47, 393, 434
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	6 cut(s)	35, 240, 326, 622, 688, 811
Kzo9I	GATC	3 cut(s)	28, 325, 549
LmnI	GCTCC	2 cut(s)	550, 613
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	30, 327, 551
MboI	GATC	3 cut(s)	28, 325, 549
MboII	GAAGA	4 cut(s)	47, 98, 823, 959
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	2 cut(s)	5, 212
MluCI	AATT	7 cut(s)	119, 386, 716, 724, 815, 952, 974
MluNI	TGGCCA	2 cut(s)	5, 212
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	77, 477
Mox20I	TGGCCA	2 cut(s)	5, 212
MscI	TGGCCA	2 cut(s)	5, 212
MseI	TTAA	4 cut(s)	242, 519, 710, 846
Msp20I	TGGCCA	2 cut(s)	5, 212
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	28, 325, 549
NlaIII	CATG	6 cut(s)	35, 240, 326, 622, 688, 811
NlaIV	GGNNCC	3 cut(s)	137, 232, 737
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	2 cut(s)	31, 322
PceI	AGGCCT	1 cut(s)	566
PciI	ACATGT	1 cut(s)	618
PctI	GAATGC	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	137, 232, 737
PspPI	GGNCC	1 cut(s)	602
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	3 cut(s)	347, 439, 629
RsaNI	GTAC	3 cut(s)	346, 438, 628
SaqAI	TTAA	4 cut(s)	242, 519, 710, 846
Sau3AI	GATC	3 cut(s)	28, 325, 549
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	618
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	341, 540
SmoI	CTYRAG	2 cut(s)	341, 540
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	7 cut(s)	119, 386, 716, 724, 815, 952, 974
SseBI	AGGCCT	1 cut(s)	566
SspMI	CTAG	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	405, 458
TasI	AATT	7 cut(s)	119, 386, 716, 724, 815, 952, 974
TatI	WGTACW	2 cut(s)	345, 437
Tru1I	TTAA	4 cut(s)	242, 519, 710, 846
Tru9I	TTAA	4 cut(s)	242, 519, 710, 846
TscAI	CASTG	2 cut(s)	16, 55
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	6 cut(s)	48, 505, 701, 728, 824, 914
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	16, 55
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	4 cut(s)	386, 724, 952, 974
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.