Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

26012937 .. 26014664

Gene Structure 1728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTGACCATGAAGAAAAAAACCTGAGTGATGAGTGTAAGGAACTCCTTCTTTCTCTCCCCAAAGAAAGAGGAGGCTGGTTAGGCCCTCCCCAATATCAATACCAAGGCTTCTGGTGCGTGACAGCAGATATAGTCCAAGCCACAATCGCTTTCCAAAGGCAGTTCCAAGCTAGAGACTCTGACATAGTTGTGGCCAGCGTACCCAAATGCGGCACCACATGGTTGAAGGCCTTGACTTTTGCTGTGGTGAATCGACACCGTTTTGAAATAGAGGCACATCCCTTGCTCACATCCAACTCCCATAATCTTGTGCAACACTTCGAGGTTGATCTCTACATAAACAACCGAGTTCCTGATTTCTCATCCAAGTTTCCTGGTGAGCCAAGGCGACTCTTTGCAACCCATATTCCTTTTCCTTCGTTGGGTACAATTACAAAGTCCAATTGTAAGATCGTTTATGTTTGCAGAAACCCATTCGACTCATTTGTTTCTTACTGGCATTTCATTAACAAGGTCAGGCCACAATCTTTAGGTCCATTGTCCCTCGATGAGACTTTTGATAAGTATTGCCAAGGCATGGATGGGTTTGGTCCATTTTGGGATCACATTTTGCGTTACTGGAAAGAGAGCTTGAAAAGACCTAACAATGTGTTGTTCTTCAAGTACGAGGACATGAAGAAAGATGTTGTACTTCACTTGAAAGCATTAGCCAAGTTTATAGACTGCCCTTTCACCGAGGAGGAGGAGAGAAACGGTGTGATTGAAGACATGGCAAAGCTCTGTTCTTTTGACACCATGAAGAAGTTGGAGGTCAACAAAACCGGAACGTTTGTCATGAATTTGGAGAGTAAACACCTGTTCAGAAAAGCCGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGAAGGAGAGGATGTCCAGACTCATAGAAGAAAAGTTCAGTGGTTCAGGCTTGACATTTGAAGTGACTCCCGAGCTAGCAGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

333

Amino Acids

38.49

Weight (kDa)

6.38

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	60 - 320	1.6e-61	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	580
AciI	CCGC	1 cut(s)	213
AclI	AACGTT	1 cut(s)	830
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	841
AfaI	GTAC	4 cut(s)	204, 430, 668, 693
AfiI	CCNNNNNNNGG	3 cut(s)	212, 425, 580
AgsI	TTSAA	7 cut(s)	229, 269, 637, 664, 703, 767, 971
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	5 cut(s)	173, 633, 781, 985, 996
AluI	AGCT	5 cut(s)	173, 633, 781, 985, 996
Alw26I	GTCTC	2 cut(s)	171, 548
AlwI	GGATC	1 cut(s)	612
Ama87I	CYCGRG	1 cut(s)	980
AoxI	GGCC	4 cut(s)	85, 195, 231, 521
ApoI	RAATTY	1 cut(s)	841
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	86, 536, 593
AsuHPI	GGTGA	3 cut(s)	262, 392, 727
AsuNHI	GCTAGC	1 cut(s)	985
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	2 cut(s)	536, 593
BalI	TGGCCA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	774
BccI	CCATC	1 cut(s)	578
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	171, 548
BfaI	CTAG	3 cut(s)	174, 986, 997
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	536, 593
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	3 cut(s)	86, 536, 593
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	378
BmtI	GCTAGC	1 cut(s)	989
BpiI	GAAGAC	1 cut(s)	774
BsaJI	CCNNGG	5 cut(s)	106, 386, 574, 738, 873
BsaWI	WCCGGW	1 cut(s)	824
BsaXI	ACNNNNNCTCC	4 cut(s)	873, 903, 908, 938
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 425, 580
Bse1I	ACTGG	2 cut(s)	503, 626
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	5 cut(s)	106, 386, 574, 738, 873
BseGI	GGATG	5 cut(s)	280, 293, 365, 589, 927
BseLI	CCNNNNNNNGG	3 cut(s)	212, 425, 580
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	503, 626
BseRI	GAGGAG	4 cut(s)	87, 755, 758, 761
BshFI	GGCC	4 cut(s)	87, 197, 233, 523
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	1 cut(s)	825
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	212, 425, 580
BsmAI	GTCTC	2 cut(s)	171, 548
BsmFI	GGGAC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	87, 197, 233, 523
BsoBI	CYCGRG	1 cut(s)	980
Bsp143I	GATC	3 cut(s)	331, 453, 604
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	4 cut(s)	87, 197, 233, 523
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	989
BspPI	GGATC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	503, 626
BssECI	CCNNGG	5 cut(s)	106, 386, 574, 738, 873
BssMI	GATC	3 cut(s)	331, 453, 604
BssT1I	CCWWGG	3 cut(s)	106, 386, 574
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	263, 758
BstC8I	GCNNGC	2 cut(s)	199, 987
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	5 cut(s)	280, 293, 365, 589, 927
BstKTI	GATC	3 cut(s)	334, 456, 607
BstMAI	GTCTC	2 cut(s)	171, 548
BstMBI	GATC	3 cut(s)	331, 453, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 117, 149
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	774
BsuRI	GGCC	4 cut(s)	87, 197, 233, 523
BtsCI	GGATG	5 cut(s)	280, 293, 365, 589, 927
BtsIMutI	CAGTG	1 cut(s)	955
Cac8I	GCNNGC	2 cut(s)	199, 987
CciI	TCATGA	1 cut(s)	837
Cfr13I	GGNCC	3 cut(s)	86, 536, 593
Csp6I	GTAC	4 cut(s)	203, 429, 667, 692
CviAII	CATG	7 cut(s)	11, 222, 580, 676, 772, 799, 838
CviQI	GTAC	4 cut(s)	203, 429, 667, 692
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	333, 455, 606
DpnII	GATC	3 cut(s)	331, 453, 604
EaeI	YGGCCR	1 cut(s)	195
Eco130I	CCWWGG	3 cut(s)	106, 386, 574
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	536, 593
Eco88I	CYCGRG	1 cut(s)	980
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	3 cut(s)	106, 386, 574
ErhI	CCWWGG	3 cut(s)	106, 386, 574
FaeI	CATG	7 cut(s)	14, 225, 583, 679, 775, 802, 841
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	7 cut(s)	10, 221, 579, 675, 771, 798, 837
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	5 cut(s)	267, 280, 352, 596, 934
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	174, 986, 997
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	4 cut(s)	87, 197, 233, 523
HapII	CCGG	1 cut(s)	825
Hin1II	CATG	7 cut(s)	14, 225, 583, 679, 775, 802, 841
HincII	GTYRAC	2 cut(s)	817, 892
HindII	GTYRAC	2 cut(s)	817, 892
HinfI	GANTC	6 cut(s)	179, 253, 393, 482, 930, 976
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	1 cut(s)	825
HphI	GGTGA	3 cut(s)	262, 392, 727
Hpy166II	GTNNAC	3 cut(s)	817, 854, 892
Hpy188I	TCNGA	2 cut(s)	184, 866
Hpy188III	TCNNGA	4 cut(s)	356, 838, 927, 980
Hpy8I	GTNNAC	3 cut(s)	817, 854, 892
HpyAV	CCTTC	4 cut(s)	59, 223, 429, 907
HpyCH4III	ACNGT	2 cut(s)	263, 758
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	3 cut(s)	316, 401, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 117, 149
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	7 cut(s)	14, 225, 583, 679, 775, 802, 841
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	331, 453, 604
MaeI	CTAG	3 cut(s)	174, 986, 997
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	3 cut(s)	121, 617, 973
MalI	GATC	3 cut(s)	333, 455, 606
MboI	GATC	3 cut(s)	331, 453, 604
MboII	GAAGA	6 cut(s)	26, 652, 691, 779, 814, 950
MfeI	CAATTG	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	3 cut(s)	432, 445, 841
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	5 cut(s)	173, 387, 476, 924, 970
MmeI	TCCRAC	2 cut(s)	321, 789
Mox20I	TGGCCA	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	2 cut(s)	510, 891
MslI	CAYNNNNRTG	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	84, 117, 149
NdeII	GATC	3 cut(s)	331, 453, 604
NheI	GCTAGC	1 cut(s)	985
NlaIII	CATG	7 cut(s)	14, 225, 583, 679, 775, 802, 841
NlaIV	GGNNCC	1 cut(s)	217
NmeAIII	GCCGAG	1 cut(s)	898
NmuCI	GTSAC	2 cut(s)	121, 973
PagI	TCATGA	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	5 cut(s)	173, 387, 476, 924, 970
PpsI	GAGTC	5 cut(s)	173, 387, 476, 924, 970
Psp1406I	AACGTT	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	86, 536, 593
RsaI	GTAC	4 cut(s)	204, 430, 668, 693
RsaNI	GTAC	4 cut(s)	203, 429, 667, 692
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	510, 891
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	331, 453, 604
Sau96I	GGNCC	3 cut(s)	86, 536, 593
SchI	GAGTC	5 cut(s)	173, 387, 476, 924, 970
ScrFI	CCNGG	1 cut(s)	378
SinI	GGWCC	2 cut(s)	536, 593
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	432, 445, 841
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	3 cut(s)	174, 986, 997
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	3 cut(s)	106, 386, 574
TaaI	ACNGT	2 cut(s)	263, 758
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	4 cut(s)	256, 324, 480, 549
TasI	AATT	3 cut(s)	432, 445, 841
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	510, 891
Tru9I	TTAA	2 cut(s)	510, 891
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	2 cut(s)	121, 973
Tsp45I	GTSAC	2 cut(s)	121, 973
TspDTI	ATGAA	6 cut(s)	27, 496, 692, 815, 854, 926
TspRI	CASTG	1 cut(s)	955
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	536, 593
XapI	RAATTY	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 805
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	3 cut(s)	174, 986, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.