Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

22738880 .. 22743330

Gene Structure 4451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCTCCTTCTTTGAAAGTCTTCACTAGGAGTTCTCTTCTTCGCAGTACCGATCAAAGCAAGACCAAAGGAGTCTCTGTTGAAATTGCCTCTTCTCTCTTTCGCACCTTACTTGATCGGTTCATTGTGGTGAACCGTAAACTTGATCATCTTCGGACGGATGTGGTTCAGGAGTTACCTAGAGCATGCTGCAAGCTAATAGACTATATATGTGGGTGTCTCTGTGAGCAAATTTTCGTGCTCAGTCCAATTTCTAGCAACCACTCCCTGCTTACTATGACAGAAAATCAGCTGGCTGACCATGAAGAAAAAAACCTCAGCAATGAGTGTAAGGAACTCCTTCTTTCTCTCCCCAAAGAAAAAGGCTGGATTTCCCTTCACCAATATCAATACCAAGGCTTTTGGTGCCCAACAGCAGAAATATTCCAAGCCATAATCGCTTTCCAAAAGCACTTCCAAGCTAGGAACTCCGACATAGTTTTAGCTACAGCACCAAAAGCAGGCACCACATGGTTAAAAGCCTTGGTTTTTGCTACTGTGAACCGACACCGTTTCGCAATAAACACCCACCCCTTGCTCACTTCCAACCCTCATGATCTTGTGCGATACTTTGAGTTGGATCTCTTTGCAAACAACCTAGTTCCTGATCTCTCCAAGTTACCTGAGCCAAGACTCTTTGGGACTCATGTTCCTTTTCTTTCTTTGGGTGCAATCAAAGAGTCCAACTGTAAGATCATTTATGTTTGCAGAAACCCATTTGATGCATTTATTTCTACTTGGCATTTCTTTAACAAACTCAAGCCACAACATCAAGCTCCATTGTCCCTTGATGAGGCCTTTGACATGTTTTGCAAAGGCACAGTTGGGTTTGGTCCATTTTGGGATCACATGTTGGGGTATTGGAAAGAGAGCTTGAAAAGGCCTCAGAATGTGTTATTCTTGAAGTACGAGTACATGAAGGAAGATGTTGTGTTGCAGTTGAAAAGATTGGCTAAGTTTTTAGACTACCCTTTCACTATGGAGGAGGAGAGAAATGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGACTTTGGAGATCAACAAAACTGGCATGACTACCATGAAGTTTGAGAATAAGGCCCTATTCAGAAAAGCTGAAGTGGGAGATTGGGTTAACTATTTCACCCCTAAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTGGTTCAGGCTTGACATTCAAAGTGATTCCCGAGCTATCAGATCCTGTGCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

429

Amino Acids

49.41

Weight (kDa)

8.19

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	157 - 413	1.4e-69	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	405, 503
AclWI	GGATC	3 cut(s)	627, 891, 1265
AcsI	RAATTY	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	1173
AfaI	GTAC	3 cut(s)	49, 947, 953
AfiI	CCNNNNNNNGG	3 cut(s)	500, 832, 1189
AflIII	ACRYGT	2 cut(s)	843, 888
AgsI	TTSAA	7 cut(s)	16, 83, 916, 943, 982, 1046, 1249
AluBI	AGCT	9 cut(s)	196, 292, 461, 485, 815, 912, 1060, 1151, 1264
AluI	AGCT	9 cut(s)	196, 292, 461, 485, 815, 912, 1060, 1151, 1264
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	79, 224, 1067
AlwI	GGATC	3 cut(s)	627, 891, 1265
AlwNI	CAGNNNCTG	1 cut(s)	1274
Ama87I	CYCGRG	1 cut(s)	1259
AoxI	GGCC	3 cut(s)	834, 920, 1134
ApeKI	GCWGC	2 cut(s)	189, 1279
ApoI	RAATTY	1 cut(s)	231
Asp700I	GAANNNNTTC	2 cut(s)	20, 339
AspS9I	GGNCC	2 cut(s)	872, 1135
AsuHPI	GGTGA	3 cut(s)	142, 371, 1171
AvaI	CYCGRG	1 cut(s)	1259
AvaII	GGWCC	1 cut(s)	872
BaeGI	GKGCMC	1 cut(s)	410
BanI	GGYRCC	2 cut(s)	405, 503
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
BbsI	GAAGAC	3 cut(s)	13, 1053, 1088
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	1183
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	79, 224, 1067
BfaI	CTAG	6 cut(s)	27, 180, 255, 462, 638, 1288
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	190, 1280
BlsI	GCNGC	2 cut(s)	191, 1281
Bme18I	GGWCC	1 cut(s)	872
BmeT110I	CYCGRG	1 cut(s)	1259
BmgT120I	GGNCC	2 cut(s)	872, 1135
BmiI	GGNNCC	3 cut(s)	6, 407, 505
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	3 cut(s)	13, 1053, 1088
Bpu10I	CCTNAGC	2 cut(s)	317, 663
BpuEI	CTTGAG	1 cut(s)	782
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	394, 522
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 1152, 1182, 1187, 1217
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 832, 1189
Bse1I	ACTGG	1 cut(s)	1108
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	394, 522
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	500, 832, 1189
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	4 cut(s)	256, 331, 654, 938
BseNI	ACTGG	1 cut(s)	1108
BseRI	GAGGAG	3 cut(s)	1037, 1040, 1208
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	3 cut(s)	836, 922, 1136
BshNI	GGYRCC	2 cut(s)	405, 503
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	1259
BslFI	GGGAC	2 cut(s)	694, 808
BslI	CCNNNNNNNGG	3 cut(s)	500, 832, 1189
BsmAI	GTCTC	3 cut(s)	79, 224, 1067
BsmFI	GGGAC	2 cut(s)	694, 808
BsnI	GGCC	3 cut(s)	836, 922, 1136
Bso31I	GGTCTC	1 cut(s)	1067
BsoBI	CYCGRG	1 cut(s)	1259
Bsp1286I	GDGCHC	2 cut(s)	243, 410
BspANI	GGCC	3 cut(s)	836, 922, 1136
BspCNI	CTCAG	4 cut(s)	255, 330, 655, 937
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	6, 407, 505
BspPI	GGATC	3 cut(s)	627, 891, 1265
BspT107I	GGYRCC	2 cut(s)	405, 503
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	1108
BssECI	CCNNGG	2 cut(s)	394, 522
BssT1I	CCWWGG	2 cut(s)	394, 522
Bst4CI	ACNGT	5 cut(s)	137, 538, 551, 728, 862
Bst6I	CTCTTC	2 cut(s)	42, 97
BstC8I	GCNNGC	4 cut(s)	187, 194, 294, 502
BstDEI	CTNAG	6 cut(s)	242, 317, 663, 924, 993, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	1 cut(s)	166
BstMAI	GTCTC	3 cut(s)	79, 224, 1067
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 437, 497
BstNSI	RCATGY	3 cut(s)	189, 847, 892
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	3 cut(s)	13, 1053, 1088
BstX2I	RGATCY	2 cut(s)	619, 1270
BstYI	RGATCY	2 cut(s)	619, 1270
BsuRI	GGCC	3 cut(s)	836, 922, 1136
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	4 cut(s)	187, 194, 294, 502
CaiI	CAGNNNCTG	1 cut(s)	1274
CciI	TCATGA	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	872, 1135
Csp6I	GTAC	3 cut(s)	48, 946, 952
CviQI	GTAC	3 cut(s)	48, 946, 952
DdeI	CTNAG	6 cut(s)	242, 317, 663, 924, 993, 1185
Eam1104I	CTCTTC	2 cut(s)	42, 97
EarI	CTCTTC	2 cut(s)	42, 97
Eco130I	CCWWGG	2 cut(s)	394, 522
Eco147I	AGGCCT	2 cut(s)	836, 922
Eco31I	GGTCTC	1 cut(s)	1067
Eco47I	GGWCC	1 cut(s)	872
Eco57I	CTGAAG	1 cut(s)	1173
Eco88I	CYCGRG	1 cut(s)	1259
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoT14I	CCWWGG	2 cut(s)	394, 522
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	2 cut(s)	394, 522
FaqI	GGGAC	2 cut(s)	694, 808
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	190, 1280
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	190, 1280
FspBI	CTAG	6 cut(s)	27, 180, 255, 462, 638, 1288
GluI	GCNGC	2 cut(s)	190, 1280
HaeIII	GGCC	3 cut(s)	836, 922, 1136
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HinfI	GANTC	5 cut(s)	72, 672, 682, 719, 1255
HpaI	GTTAAC	1 cut(s)	1171
HphI	GGTGA	3 cut(s)	142, 371, 1171
Hpy166II	GTNNAC	4 cut(s)	133, 140, 541, 1171
Hpy188I	TCNGA	5 cut(s)	156, 472, 927, 1145, 1270
Hpy188III	TCNNGA	5 cut(s)	170, 593, 644, 940, 1259
Hpy8I	GTNNAC	4 cut(s)	133, 140, 541, 1171
HpyAV	CCTTC	4 cut(s)	18, 350, 386, 952
HpyCH4III	ACNGT	5 cut(s)	137, 538, 551, 728, 862
HpyCH4V	TGCA	8 cut(s)	192, 629, 710, 747, 764, 852, 976, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 437, 497
HpyF3I	CTNAG	6 cut(s)	242, 317, 663, 924, 993, 1185
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	1171
LmnI	GCTCC	2 cut(s)	10, 820
LpnPI	CCDG	9 cut(s)	155, 278, 281, 352, 486, 657, 675, 1089, 1221
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	6 cut(s)	27, 180, 255, 462, 638, 1288
MaeIII	GTNAC	2 cut(s)	174, 657
MflI	RGATCY	2 cut(s)	619, 1270
MhlI	GDGCHC	2 cut(s)	243, 410
MluCI	AATT	3 cut(s)	84, 231, 249
MlyI	GAGTC	4 cut(s)	81, 666, 676, 728
MmeI	TCCRAC	4 cut(s)	495, 597, 609, 747
MnlI	CCTC	8 cut(s)	100, 326, 600, 826, 933, 1015, 1018, 1186
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	2 cut(s)	20, 339
MseI	TTAA	3 cut(s)	515, 789, 1170
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	405, 437, 497
NlaIV	GGNNCC	3 cut(s)	6, 407, 505
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	3 cut(s)	189, 847, 892
PaeI	GCATGC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	592
PceI	AGGCCT	2 cut(s)	836, 922
PciI	ACATGT	2 cut(s)	843, 888
PdmI	GAANNNNTTC	2 cut(s)	20, 339
PfeI	GAWTC	1 cut(s)	1255
PkrI	GCNGC	2 cut(s)	191, 1281
PleI	GAGTC	4 cut(s)	80, 666, 676, 727
PpsI	GAGTC	4 cut(s)	80, 666, 676, 727
PscI	ACATGT	2 cut(s)	843, 888
PspN4I	GGNNCC	3 cut(s)	6, 407, 505
PspPI	GGNCC	2 cut(s)	872, 1135
PstNI	CAGNNNCTG	1 cut(s)	1274
PsuI	RGATCY	2 cut(s)	619, 1270
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	3 cut(s)	49, 947, 953
RsaNI	GTAC	3 cut(s)	48, 946, 952
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	515, 789, 1170
SatI	GCNGC	2 cut(s)	190, 1280
Sau96I	GGNCC	2 cut(s)	872, 1135
SchI	GAGTC	4 cut(s)	81, 666, 676, 728
SduI	GDGCHC	2 cut(s)	243, 410
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	3 cut(s)	84, 231, 249
SseBI	AGGCCT	2 cut(s)	836, 922
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	6 cut(s)	27, 180, 255, 462, 638, 1288
StuI	AGGCCT	2 cut(s)	836, 922
StyI	CCWWGG	2 cut(s)	394, 522
TaaI	ACNGT	5 cut(s)	137, 538, 551, 728, 862
TasI	AATT	3 cut(s)	84, 231, 249
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	1 cut(s)	1255
Tru1I	TTAA	3 cut(s)	515, 789, 1170
Tru9I	TTAA	3 cut(s)	515, 789, 1170
TseI	GCWGC	2 cut(s)	189, 1279
TspDTI	ATGAA	5 cut(s)	112, 318, 971, 1094, 1133
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	872
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	3 cut(s)	189, 847, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XmnI	GAANNNNTTC	2 cut(s)	20, 339
XspI	CTAG	6 cut(s)	27, 180, 255, 462, 638, 1288
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.