Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

21829989 .. 21831053

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCATGAATGTGTGGGAGCTCTAGTATATAATCGTGGGGTGTTTGCGTCCTCTACCACCTCCACAACCACATCAATGGCACCCACTGAGGAAGAAAAAATCAGTGATGAGTGCAAGCAAATGCTTCTTTCTCTCCCCAAGGAGAGAGGTTGGAGAACCCTTCACCTCTATCAGTTCCAAGGCTTTTGGTGCCAGGCAGCTGAGATCCAGTCCATAATCACTTTCCAAAAGCACTTCCAAGCTACTGACACTGACATAGTCTTAGCCACCATACCAAAATCCGGCACCACATGGCTGAAAGCCTTGGCTTTCGCCACCGTCAACCGCCACCGTTTCACCACAAACTCAAAGAGCCACCCTTTGCTCACTTCCAACCCTCATGACCTTGTGCCTTTCTTTGAGTACAAGCTTTATGCAAACAACCAGATTCCTGATCTCACCACCACCAACCTTCCTGATGATCAGCCAAGACTCTTTGGAACCCACATCCCTTTTGCTTCTCTGGCTAACTCCATCAGAAAATCTAACTCAAAGATTGTTTACATATGCAGGAACCCTTTTGACACATTTGTGTCCTCTTGGCATTTCCTTAACAAAGTGAATCCAGAATCAAAAGTTCCACTCTCTATGGAGGAGGCATTTGACATGTACTGCAAGGGCATAGTAGGGTTTGGTCCCTTCTGGGACCACATGCTGGGGTACTGGAATGAGAGCTTGCTTAGGCCCCAAAAGGTGCTTTTCTTGAAGTATGAGGACCTGAAGGAAGATGGTGTCTTTCAACTAAAAAAACTGGCCAAGTTTTTGGGCTGCCCTTTTACTCTGGTAGAGGAGAAAAATGGTGTGATAGAAAGCATTTCGAAGCTGTGTTGCTTTGACAACATGAAGAAATTGGAGGTTAATAAAACTGGTTCTTCTATTAAGAACTTTGAGAATAAGAACCTGTTTAGAAAAGCTGAGGTCGGAGATTGGGTTAACTATTTGTCCCCAAAGATGGTGGAGAGGCTGTCCAAGGTCATAGAAGACAAGTTATGTGGTTCAGGTTTGAGATTCAAAGTGTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

355

Amino Acids

40.53

Weight (kDa)

8.71

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	83 - 346	7.7e-68	Sulfotransferase domain
Sulfotransfer_3	PF13469	176 - 273	3e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	79, 189, 284
AccB7I	CCANNNNNTGG	1 cut(s)	694
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	3 cut(s)	404, 650, 701
AfiI	CCNNNNNNNGG	3 cut(s)	281, 694, 991
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	3 cut(s)	745, 779, 1051
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	7 cut(s)	20, 200, 242, 409, 714, 862, 953
AluI	AGCT	7 cut(s)	20, 200, 242, 409, 714, 862, 953
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	722, 792
ApeKI	GCWGC	2 cut(s)	197, 807
AspS9I	GGNCC	4 cut(s)	674, 685, 723, 754
AsuHPI	GGTGA	3 cut(s)	155, 328, 430
AsuII	TTCGAA	1 cut(s)	857
AvaII	GGWCC	3 cut(s)	674, 685, 754
BalI	TGGCCA	1 cut(s)	794
BanI	GGYRCC	3 cut(s)	79, 189, 284
BanII	GRGCYC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	209, 794
BccI	CCATC	3 cut(s)	521, 761, 985
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	460
BfaI	CTAG	2 cut(s)	23, 1063
BisI	GCNGC	2 cut(s)	198, 808
BlsI	GCNGC	2 cut(s)	199, 809
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	3 cut(s)	674, 685, 754
BmgT120I	GGNCC	4 cut(s)	674, 685, 723, 754
BmiI	GGNNCC	8 cut(s)	81, 191, 286, 481, 554, 676, 686, 725
BmrFI	CCNGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	1026
Bpu10I	CCTNAGC	2 cut(s)	719, 954
Bpu14I	TTCGAA	1 cut(s)	857
BsaJI	CCNNGG	4 cut(s)	138, 178, 303, 1008
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 954, 984, 989, 1019
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 694, 991
Bse1I	ACTGG	4 cut(s)	208, 707, 795, 910
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	4 cut(s)	138, 178, 303, 1008
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	281, 694, 991
BseMII	CTCAG	3 cut(s)	78, 192, 945
BseNI	ACTGG	4 cut(s)	208, 707, 795, 910
BseRI	GAGGAG	2 cut(s)	647, 842
BseXI	GCAGC	2 cut(s)	209, 794
BseYI	CCCAGC	1 cut(s)	694
BshFI	GGCC	2 cut(s)	724, 794
BshNI	GGYRCC	3 cut(s)	79, 189, 284
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	3 cut(s)	660, 698, 967
BslI	CCNNNNNNNGG	3 cut(s)	281, 694, 991
BsmFI	GGGAC	3 cut(s)	660, 698, 967
BsnI	GGCC	2 cut(s)	724, 794
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	204, 433, 460
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	724, 794
BspCNI	CTCAG	3 cut(s)	79, 193, 946
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	8 cut(s)	81, 191, 286, 481, 554, 676, 686, 725
BspPI	GGATC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	857
BspT107I	GGYRCC	3 cut(s)	79, 189, 284
BsrI	ACTGG	4 cut(s)	208, 707, 795, 910
BssECI	CCNNGG	4 cut(s)	138, 178, 303, 1008
BssMI	GATC	3 cut(s)	204, 433, 460
BssT1I	CCWWGG	4 cut(s)	138, 178, 303, 1008
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	319, 332
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	116, 716
BstDEI	CTNAG	5 cut(s)	87, 201, 262, 719, 954
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	3 cut(s)	207, 436, 463
BstMBI	GATC	3 cut(s)	204, 433, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 503
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	649, 694
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	209, 794
BstV2I	GAAGAC	1 cut(s)	1026
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	2 cut(s)	76, 802
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	724, 794
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	84, 109, 249
Cac8I	GCNNGC	2 cut(s)	116, 716
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	674, 685, 723, 754
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	403, 649, 700
CspCI	CAANNNNNGTGG	4 cut(s)	975, 1010, 1012, 1047
CviAII	CATG	6 cut(s)	5, 291, 380, 646, 691, 880
CviQI	GTAC	3 cut(s)	403, 649, 700
DdeI	CTNAG	5 cut(s)	87, 201, 262, 719, 954
DpnI	GATC	3 cut(s)	206, 435, 462
DpnII	GATC	3 cut(s)	204, 433, 460
EaeI	YGGCCR	1 cut(s)	792
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	138, 178, 303, 1008
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	674, 685, 754
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	723, 754
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	4 cut(s)	138, 178, 303, 1008
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	4 cut(s)	138, 178, 303, 1008
FaeI	CATG	6 cut(s)	8, 294, 383, 649, 694, 883
FaqI	GGGAC	3 cut(s)	660, 698, 967
FatI	CATG	6 cut(s)	4, 290, 379, 645, 690, 879
FauNDI	CATATG	1 cut(s)	545
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	198, 808
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	198, 808
FspBI	CTAG	2 cut(s)	23, 1063
GluI	GCNGC	2 cut(s)	198, 808
GsaI	CCCAGC	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	724, 794
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	8, 294, 383, 649, 694, 883
HincII	GTYRAC	2 cut(s)	322, 973
HindII	GTYRAC	2 cut(s)	322, 973
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	5 cut(s)	427, 471, 601, 608, 1047
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	3 cut(s)	155, 328, 430
Hpy166II	GTNNAC	3 cut(s)	322, 541, 973
Hpy188I	TCNGA	2 cut(s)	518, 962
Hpy188III	TCNNGA	5 cut(s)	380, 431, 455, 605, 742
Hpy8I	GTNNAC	3 cut(s)	322, 541, 973
HpyAV	CCTTC	4 cut(s)	170, 461, 688, 754
HpyCH4III	ACNGT	2 cut(s)	319, 332
HpyCH4V	TGCA	5 cut(s)	4, 114, 416, 549, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 503
HpyF3I	CTNAG	5 cut(s)	87, 201, 262, 719, 954
Hsp92II	CATG	6 cut(s)	8, 294, 383, 649, 694, 883
Ksp22I	TGATCA	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	204, 433, 460
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	209, 794
MaeI	CTAG	2 cut(s)	23, 1063
MalI	GATC	3 cut(s)	206, 435, 462
MboI	GATC	3 cut(s)	204, 433, 460
MboII	GAAGA	5 cut(s)	104, 776, 895, 903, 1031
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	1 cut(s)	887
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	3 cut(s)	131, 396, 940
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	4 cut(s)	591, 897, 918, 972
MslI	CAYNNNNRTG	3 cut(s)	9, 74, 569
Msp20I	TGGCCA	1 cut(s)	794
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	189, 503
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	3 cut(s)	204, 433, 460
NlaIII	CATG	6 cut(s)	8, 294, 383, 649, 694, 883
NlaIV	GGNNCC	8 cut(s)	81, 191, 286, 481, 554, 676, 686, 725
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	649, 694
NspV	TTCGAA	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	569
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	427, 601, 608, 1047
PflFI	GACNNNGTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	694
PkrI	GCNGC	2 cut(s)	199, 809
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	754
PscI	ACATGT	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	8 cut(s)	81, 191, 286, 481, 554, 676, 686, 725
PspPI	GGNCC	4 cut(s)	674, 685, 723, 754
PspPPI	RGGWCCY	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	404, 650, 701
RsaNI	GTAC	3 cut(s)	403, 649, 700
RseI	CAYNNNNRTG	3 cut(s)	9, 74, 569
SacI	GAGCTC	1 cut(s)	22
SaqAI	TTAA	4 cut(s)	591, 897, 918, 972
SatI	GCNGC	2 cut(s)	198, 808
Sau3AI	GATC	3 cut(s)	204, 433, 460
Sau96I	GGNCC	4 cut(s)	674, 685, 723, 754
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	857
SinI	GGWCC	3 cut(s)	674, 685, 754
SmiMI	CAYNNNNRTG	3 cut(s)	9, 74, 569
Sse9I	AATT	1 cut(s)	887
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	2 cut(s)	23, 1063
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	4 cut(s)	138, 178, 303, 1008
TaaI	ACNGT	2 cut(s)	319, 332
TaqI	TCGA	1 cut(s)	857
TasI	AATT	1 cut(s)	887
TatI	WGTACW	2 cut(s)	402, 648
TfiI	GAWTC	4 cut(s)	427, 601, 608, 1047
Tru1I	TTAA	4 cut(s)	591, 897, 918, 972
Tru9I	TTAA	4 cut(s)	591, 897, 918, 972
TscAI	CASTG	3 cut(s)	91, 109, 256
TseI	GCWGC	2 cut(s)	197, 807
TspDTI	ATGAA	2 cut(s)	21, 896
TspRI	CASTG	3 cut(s)	91, 109, 256
Tth111I	GACNNNGTC	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	3 cut(s)	674, 685, 754
XceI	RCATGY	2 cut(s)	649, 694
XspI	CTAG	2 cut(s)	23, 1063
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.