Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

12070334 .. 12070600

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13451.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTTCTATTCTAAATTGCACTTGAAAACATTGGCCAGCTTCATAGACTACCCTTCCAATGAAGATGAGGAGAGAAACGGTTTGATTGAAGACATTGCAAAGCTTTGTGCTTTTGAGACCTTGAAGGAGTTGGAGATCAACAAAACCGGAAAATTTGTCTTGAACATTGAGAATAAGGACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTCACCCCTGAGATGGAGAAGAGAATGTCCAAACTCATAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

89

Amino Acids

10.4

Weight (kDa)

4.91

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	8 - 87	8.1e-12	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	25, 89, 124, 163
AluBI	AGCT	3 cut(s)	39, 103, 194
AluI	AGCT	3 cut(s)	39, 103, 194
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	186, 219
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	187, 220
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	93
BssMI	GATC	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	195, 228
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	178
CviJI	RGCY	4 cut(s)	35, 39, 103, 194
CviKI_1	RGCY	4 cut(s)	35, 39, 103, 194
DdeI	CTNAG	2 cut(s)	195, 228
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	178
FaiI	YATR	2 cut(s)	44, 257
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	101
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	63, 118
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	19, 98
HpyF3I	CTNAG	2 cut(s)	195, 228
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	4 cut(s)	49, 160, 194, 240
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	3 cut(s)	74, 101, 250
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	14, 152
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	61, 190
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	178
SetI	ASST	6 cut(s)	41, 105, 122, 183, 196, 201
SgeI	CNNG	7 cut(s)	34, 48, 133, 159, 172, 193, 239
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	14, 152
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	2 cut(s)	14, 152
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	31, 75
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.