Rroxscaffold_4G00322710

Belongs to the sulfotransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
53145074 .. 53145493
420 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00322710.1

Sequence Viewer

Length: 420 bp
ATGTATTGCAAGGGCATTGTTGGGTTTGGTCCTTTTTGGAAGCACATGTTGGGGTACTGGAAAGAGAGCTTGAACAGACCTGACAATGTTTTGTTCTTGAAGTATGAGGACATAAAGGAAAAAGGTGTGTTTCAGTTAAAGAAATTGGCAAAGTTTTTGGGGTTCCCTTTTAGTTTGAAGGAGGAGAGAGGTGGTGAGATTGAGGAAATAGCAAAGCTTTGTGGTTTTGAGAACATGAAGAAATTGGAGGTCAATAGAAGTGGCAAGTCTATTAAGAACTTTGAGAATAAGAGCCTATTTAGAAAAGCCGAGGTGGGGGATTGGATGAACCATTTGACCCCTAATATGGTTGAAAGGTTGTCCAAAGTCCTTGAAGAAAAGTTGGGAGGTTCAGGTTTGAAATTCAATGTGTTTCCCTGA

Protein Analysis

139

Amino Acids

16.13

Weight (kDa)

9.39

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 2 - 132 7.7e-32 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 315, 346
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 7 cut(s) 73, 100, 178, 353, 374, 400, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 69, 217
AluI AGCT 2 cut(s) 69, 217
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 346
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 315, 346
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 315, 346
BspLI GGNNCC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 2 cut(s) 46, 235
CviJI RGCY 4 cut(s) 69, 217, 294, 308
CviKI_1 RGCY 4 cut(s) 69, 217, 294, 308
CviQI GTAC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 29
FaeI CATG 2 cut(s) 49, 238
FaiI YATR 5 cut(s) 47, 105, 113, 236, 347
FatI CATG 2 cut(s) 45, 234
FokI GGATG 1 cut(s) 337
Hin1II CATG 2 cut(s) 49, 238
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 9
Hsp92II CATG 2 cut(s) 49, 238
LpnPI CCDG 3 cut(s) 43, 93, 378
MboII GAAGA 2 cut(s) 250, 386
MluCI AATT 3 cut(s) 143, 242, 401
MnlI CCTC 7 cut(s) 100, 175, 182, 196, 241, 304, 380
MseI TTAA 2 cut(s) 137, 273
NlaIII CATG 2 cut(s) 49, 238
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PscI ACATGT 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 137, 273
Sau96I GGNCC 1 cut(s) 29
SinI GGWCC 1 cut(s) 29
Sse9I AATT 3 cut(s) 143, 242, 401
TasI AATT 3 cut(s) 143, 242, 401
Tru1I TTAA 2 cut(s) 137, 273
Tru9I TTAA 2 cut(s) 137, 273
TspDTI ATGAA 2 cut(s) 251, 341
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.