Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

17004906 .. 17036047

Gene Structure 31142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG081700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCCCCCTAAAGCTTCAATGGCTATCACAGAAAACCAGCCGGCTGATCACGAGGAAGAAAAGCTCAGTGATGAGTGCAAGGCACTCCTTCTTTCTCTCCCCAAAGAGAAAGGGTGGAGAACCCTGCACCAATATCGATTCCAGGGTTTCTGGTGCCAATCTGCTGAAATCCAATCCATAATGGCTTTCCAAAACCACTTCCAAGCTAATGACTCCGACGTAGTCTTGGCCACCATCCCAAAATCGGGCACAACATGGTTAAAAGCCTTGACTTTTGCTATCGTGAACCGACACCGCTTCTCAATCAAGAGCCATCCTTTGCTCACTTCCAACCCTCATCATCTTGTGCCATTCTTCGAGTACAATCTCTATGCAAACAACCAACTTCCTGATCTCTCCAAATTTCCTGAGCCAAGACTGTTTGGGACACACATTCCTTATCCTTCTCTGAGTACAATAAAAAAGTCCAACTGTAAGATTGTTTACATTTGCAGAAACCCATTTGATACATTTGTGTCCTCTTGGCATTTCATTAACAAAGTGAAGCCACAATCTCAAGCTCCGATCTCTCTCGATGAGGCCTTTGATATGTATTGCAAGGGCATAGTTGGGTTTGGTCCGTTTTGGGAGCACATGTTGGGGTACTGGAAAGAGAGCTTGAACAGACCTGACAATGTTTTGTTCTTGAAGTATGAGGACATGAAGGAAAATGGTGTGTTTCAGTTAAAGAAATTGGCAAATTTTCTGGGGTTCCCTTTTAGTTTGGAGGAGGAGAGAGGTGGTGAGATTGAGGAAATAGCAAAGCTTTGTGGTTTTGAGAACATGAAGAAATTGGAGGTCAATAGAAGTGGCAAGTCTATTAAGAACTTTGAGAATAAGAACCTATTTAGAAAAGCCGAGGTGGGGGATTGGATGAACTATTTGACCCCTAATATGGTTGAAAGGTTGTCCAAAGTCCTTGAAGAAAAGTTGGGGGGTTCAGGTTTGAAATTCAATGTGCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

335

Amino Acids

38.65

Weight (kDa)

8.38

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	71 - 328	5.7e-71	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	401, 739, 989
AfaI	GTAC	3 cut(s)	362, 454, 644
AfiI	CCNNNNNNNGG	4 cut(s)	244, 245, 903, 934
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	7 cut(s)	18, 661, 688, 941, 962, 988, 994
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	6 cut(s)	14, 64, 206, 560, 657, 805
AluI	AGCT	6 cut(s)	14, 64, 206, 560, 657, 805
Alw21I	GWGCWC	1 cut(s)	633
AoxI	GGCC	2 cut(s)	228, 579
ApoI	RAATTY	3 cut(s)	401, 739, 989
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	633
BccI	CCATC	2 cut(s)	242, 321
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	155, 752
BmrFI	CCNGG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	142, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 245, 903, 934
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	142, 897
BseGI	GGATG	3 cut(s)	234, 313, 918
BseLI	CCNNNNNNNGG	4 cut(s)	244, 245, 903, 934
BseMII	CTCAG	3 cut(s)	79, 399, 440
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	2 cut(s)	782, 785
BseSI	GKGCMC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	230, 581
BshNI	GGYRCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	4 cut(s)	244, 245, 903, 934
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	230, 581
Bsp1286I	GDGCHC	2 cut(s)	251, 633
Bsp143I	GATC	3 cut(s)	46, 391, 564
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	230, 581
BspCNI	CTCAG	3 cut(s)	78, 400, 441
BspDI	ATCGAT	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	155, 752
BspT107I	GGYRCC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	650
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	142, 897
BssMI	GATC	3 cut(s)	46, 391, 564
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	420, 473
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	65, 408, 449
BstF5I	GGATG	3 cut(s)	234, 313, 918
BstKTI	GATC	3 cut(s)	49, 394, 567
BstMBI	GATC	3 cut(s)	46, 391, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	230, 581
BsuTUI	ATCGAT	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	234, 313, 918
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	617
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	361, 453, 643
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	4 cut(s)	255, 634, 700, 823
CviQI	GTAC	3 cut(s)	361, 453, 643
DdeI	CTNAG	3 cut(s)	65, 408, 449
DpnI	GATC	3 cut(s)	48, 393, 566
DpnII	GATC	3 cut(s)	46, 391, 564
EaeI	YGGCCR	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	4 cut(s)	258, 637, 703, 826
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	254, 633, 699, 822
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	3 cut(s)	221, 300, 925
HaeIII	GGCC	2 cut(s)	230, 581
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	4 cut(s)	258, 637, 703, 826
HindIII	AAGCTT	2 cut(s)	12, 803
HinfI	GANTC	2 cut(s)	138, 212
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	2 cut(s)	286, 484
Hpy188I	TCNGA	3 cut(s)	217, 450, 564
Hpy188III	TCNNGA	7 cut(s)	50, 283, 307, 389, 407, 572, 685
Hpy8I	GTNNAC	2 cut(s)	286, 484
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	98, 453, 697
HpyCH4III	ACNGT	2 cut(s)	420, 473
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	78, 127, 374, 492, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	3 cut(s)	65, 408, 449
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	258, 637, 703, 826
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	46, 391, 564
LmnI	GCTCC	2 cut(s)	565, 628
MaeII	ACGT	1 cut(s)	219
MalI	GATC	3 cut(s)	48, 393, 566
MboI	GATC	3 cut(s)	46, 391, 564
MboII	GAAGA	4 cut(s)	68, 346, 838, 974
MhlI	GDGCHC	2 cut(s)	251, 633
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	5 cut(s)	401, 731, 739, 830, 989
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	3 cut(s)	240, 354, 492
Mox20I	TGGCCA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	4 cut(s)	260, 534, 725, 861
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	46, 391, 564
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	258, 637, 703, 826
NlaIV	GGNNCC	2 cut(s)	155, 752
NmeAIII	GCCGAG	1 cut(s)	922
NspI	RCATGY	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	1 cut(s)	633
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	155, 752
PspPI	GGNCC	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	3 cut(s)	362, 454, 644
RsaNI	GTAC	3 cut(s)	361, 453, 643
SaqAI	TTAA	4 cut(s)	260, 534, 725, 861
Sau3AI	GATC	3 cut(s)	46, 391, 564
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	251, 633
SinI	GGWCC	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	5 cut(s)	401, 731, 739, 830, 989
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	1 cut(s)	295
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	420, 473
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	136, 357, 573
TasI	AATT	5 cut(s)	401, 731, 739, 830, 989
TatI	WGTACW	2 cut(s)	360, 452
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	4 cut(s)	260, 534, 725, 861
Tru9I	TTAA	4 cut(s)	260, 534, 725, 861
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	520, 716, 839, 929
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	3 cut(s)	401, 739, 989
XceI	RCATGY	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.