Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

46276060 .. 46277072

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACTGAAAATCAGCCGGCTGGTGATGGAGAAACAGACCTCAGTAATGAGTGTAAGGAACTCCTTTCTCTCCCCAACGAAGGAGGCTGGATATCCCTTCACCAACATCAATACCAAGGCTTTTGGTGCCCAACAGAAATATTCCAAGGCATAATCGCTTTCCAAAAGCACTTCCAAGCTAGGGACTTCGATATAGTTGTGGCCAGCGTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGATTTTTGCTATTGTGAATCAACAACGTTTCAAAATAAAGATCCATCCCTTGCTCACTTCCAACTCTCATAATCTTGTCCCCTTCTTAGAGGTGGATCTCTATATAAACAACCTAGTTCCTGATTTCTCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCTTTCCTTCTTTGGATCGTTTATGTTTGCAGAAACCCATTCGACTCATTTGTTTCTCTTTGGCATTTCAGTAACAAAGCCTTTGATATGTATTGCCAAGGCGTGGATGTGTATGGTCCATTTTGGGATCACATGTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTATATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCATTAAGGAGGACGAGAGAAACGGCGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTCAGACCATGAAGAAGTTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGGAGCAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTAGTTCAGGCTTGACTTTCAAAGGGACTCCCGAGCTAGCAGATCATGTCCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

314

Amino Acids

36.41

Weight (kDa)

6.21

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	64 - 297	4.1e-56	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 221
AccB7I	CCANNNNNTGG	1 cut(s)	514
AclI	AACGTT	2 cut(s)	268, 764
AclWI	GGATC	4 cut(s)	277, 345, 434, 546
AcoI	YGGCCR	2 cut(s)	201, 645
AfaI	GTAC	3 cut(s)	210, 554, 602
AfiI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 514, 844
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	8 cut(s)	235, 274, 571, 598, 637, 701, 775, 904
AluBI	AGCT	5 cut(s)	179, 567, 715, 806, 919
AluI	AGCT	5 cut(s)	179, 567, 715, 806, 919
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	4 cut(s)	277, 345, 434, 546
Ama87I	CYCGRG	1 cut(s)	914
AoxI	GGCC	2 cut(s)	201, 645
Asp700I	GAANNNNTTC	1 cut(s)	794
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	35, 92
AsuNHI	GCTAGC	1 cut(s)	919
AvaI	CYCGRG	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	2 cut(s)	203, 647
BanI	GGYRCC	2 cut(s)	126, 221
BbsI	GAAGAC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	807
BccI	CCATC	4 cut(s)	20, 294, 614, 838
BceAI	ACGGC	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	4 cut(s)	180, 356, 920, 943
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	2 cut(s)	128, 223
BmtI	GCTAGC	1 cut(s)	923
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	2 cut(s)	384, 807
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	115, 145, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 514, 844
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	560, 763
BseDI	CCNNGG	3 cut(s)	115, 145, 508
BseGI	GGATG	3 cut(s)	286, 371, 523
BseLI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 514, 844
BseMII	CTCAG	3 cut(s)	55, 375, 798
BseNI	ACTGG	2 cut(s)	560, 763
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	203, 647
BshNI	GGYRCC	2 cut(s)	126, 221
BsiHKCI	CYCGRG	1 cut(s)	914
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	3 cut(s)	197, 305, 922
BslI	CCNNNNNNNGG	5 cut(s)	80, 181, 218, 514, 844
BsmAI	GTCTC	1 cut(s)	568
BsmFI	GGGAC	3 cut(s)	197, 305, 922
BsnI	GGCC	2 cut(s)	203, 647
Bso31I	GGTCTC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
BspANI	GGCC	2 cut(s)	203, 647
BspCNI	CTCAG	3 cut(s)	54, 376, 799
BspLI	GGNNCC	2 cut(s)	128, 223
BspOI	GCTAGC	1 cut(s)	923
BspPI	GGATC	4 cut(s)	277, 345, 434, 546
BspT107I	GGYRCC	2 cut(s)	126, 221
BspTNI	GGTCTC	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	560, 763
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	115, 145, 508
BssMI	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
BssT1I	CCWWGG	3 cut(s)	115, 145, 508
Bst6I	CTCTTC	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	18, 205, 921
BstDEI	CTNAG	4 cut(s)	41, 328, 384, 807
BstF5I	GGATG	3 cut(s)	286, 371, 523
BstKTI	GATC	6 cut(s)	285, 340, 429, 541, 750, 928
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	2 cut(s)	282, 337
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	2 cut(s)	282, 337
BsuRI	GGCC	2 cut(s)	203, 647
BtsCI	GGATG	3 cut(s)	286, 371, 523
Cac8I	GCNNGC	3 cut(s)	18, 205, 921
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	209, 553, 601
CviAII	CATG	6 cut(s)	228, 544, 610, 733, 778, 929
CviQI	GTAC	3 cut(s)	209, 553, 601
DdeI	CTNAG	4 cut(s)	41, 328, 384, 807
DpnI	GATC	6 cut(s)	284, 339, 428, 540, 749, 927
DpnII	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
EaeI	YGGCCR	2 cut(s)	201, 645
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Eco130I	CCWWGG	3 cut(s)	115, 145, 508
Eco31I	GGTCTC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	914
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	115, 145, 508
ErhI	CCWWGG	3 cut(s)	115, 145, 508
FaeI	CATG	6 cut(s)	231, 547, 613, 736, 781, 932
FaqI	GGGAC	3 cut(s)	197, 305, 922
FatI	CATG	6 cut(s)	227, 543, 609, 732, 777, 928
FokI	GGATG	3 cut(s)	273, 358, 530
FspBI	CTAG	4 cut(s)	180, 356, 920, 943
HaeIII	GGCC	2 cut(s)	203, 647
HapII	CCGG	2 cut(s)	17, 219
Hin1II	CATG	6 cut(s)	231, 547, 613, 736, 781, 932
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	4 cut(s)	259, 393, 455, 910
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	2 cut(s)	35, 92
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	2 cut(s)	729, 800
Hpy188III	TCNNGA	5 cut(s)	362, 383, 595, 772, 914
Hpy8I	GTNNAC	1 cut(s)	826
HpyAV	CCTTC	4 cut(s)	74, 107, 334, 428
HpyCH4IV	ACGT	2 cut(s)	268, 764
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	41, 328, 384, 807
HpySE526I	ACGT	2 cut(s)	268, 764
Hsp92II	CATG	6 cut(s)	231, 547, 613, 736, 781, 932
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	826
Kzo9I	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
LmnI	GCTCC	1 cut(s)	847
MaeI	CTAG	4 cut(s)	180, 356, 920, 943
MaeII	ACGT	2 cut(s)	268, 764
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	6 cut(s)	284, 339, 428, 540, 749, 927
MboI	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
MboII	GAAGA	5 cut(s)	583, 625, 713, 748, 884
MflI	RGATCY	2 cut(s)	282, 337
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	2 cut(s)	203, 647
MluNI	TGGCCA	2 cut(s)	203, 647
MlyI	GAGTC	3 cut(s)	387, 449, 904
MmeI	TCCRAC	2 cut(s)	327, 723
MnlI	CCTC	6 cut(s)	50, 77, 325, 598, 670, 802
Mox20I	TGGCCA	2 cut(s)	203, 647
MroNI	GCCGGC	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	794
MscI	TGGCCA	2 cut(s)	203, 647
MseI	TTAA	2 cut(s)	672, 825
Msp20I	TGGCCA	2 cut(s)	203, 647
MspI	CCGG	2 cut(s)	17, 219
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	919
NlaIII	CATG	6 cut(s)	231, 547, 613, 736, 781, 932
NlaIV	GGNNCC	2 cut(s)	128, 223
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PdiI	GCCGGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	514
PleI	GAGTC	3 cut(s)	387, 449, 904
PpsI	GAGTC	3 cut(s)	387, 449, 904
PscI	ACATGT	1 cut(s)	543
Psp1406I	AACGTT	2 cut(s)	268, 764
PspN4I	GGNNCC	2 cut(s)	128, 223
PspPI	GGNCC	1 cut(s)	527
PsuI	RGATCY	2 cut(s)	282, 337
RsaI	GTAC	3 cut(s)	210, 554, 602
RsaNI	GTAC	3 cut(s)	209, 553, 601
SaqAI	TTAA	2 cut(s)	672, 825
Sau3AI	GATC	6 cut(s)	282, 337, 426, 538, 747, 925
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	3 cut(s)	387, 449, 904
SduI	GDGCHC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	527
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	4 cut(s)	180, 356, 920, 943
StyI	CCWWGG	3 cut(s)	115, 145, 508
TaiI	ACGT	2 cut(s)	271, 767
TaqI	TCGA	2 cut(s)	189, 453
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	672, 825
Tru9I	TTAA	2 cut(s)	672, 825
TspDTI	ATGAA	3 cut(s)	626, 658, 749
Van91I	CCANNNNNTGG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	527
XceI	RCATGY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	4 cut(s)	180, 356, 920, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.