Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

52233548 .. 52234177

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACTGAAAATCAGCCGGCTGGTGATGGAGAAACAGACCTCAGTAATGAGTGTAAGGAACTCCTTTCTCTCCCCAAAGAAAGAGGCTGGATATCCCTTCACCAACATCAATACCAAGGCTTTTGGTGCCCAACAGAAATATTCCAAGGCATAATCGCTTTCCAAAAGCACTTCCAAGCTAGGGACTCCGATATAGTTGTGGCCAGCGTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGATTTTTGCTATTGTGAATCGACAACGTTTCGAAATAAAGATCCATCCCTTGCTCACTTCCAACTCTCATAATCTTGTCCCCTTCTTAGAGGTGGATCTCTATATAAACAACCTAGTTCCTGATTTCTCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCTTTTCCTTCTTTGGGTACAATTAAAGAGTCCAATTGTAAGATCGTTTATGTTTGCAGAAACCCATTCGACTCATTTGTTTCTCTTTGGCATTTCAGTAACAAAGTCAGGCCACAATCTTTAGCTCCATTGTCCCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGGATGTGTATGGTCCATTTTGGGATCACATGTTGGGGTACTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

209

Amino Acids

24.1

Weight (kDa)

6.04

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	62 - 209	1.8e-37	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 221
AccB7I	CCANNNNNTGG	1 cut(s)	580
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	3 cut(s)	277, 345, 612
AcoI	YGGCCR	1 cut(s)	201
AfaI	GTAC	3 cut(s)	210, 430, 620
AfiI	CCNNNNNNNGG	5 cut(s)	181, 218, 425, 553, 580
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	2 cut(s)	179, 536
AluI	AGCT	2 cut(s)	179, 536
AlwI	GGATC	3 cut(s)	277, 345, 612
AoxI	GGCC	3 cut(s)	201, 521, 555
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	35, 92
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	126, 221
BccI	CCATC	2 cut(s)	20, 294
BfaI	CTAG	2 cut(s)	180, 356
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	128, 223
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	115, 145, 574
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 218, 425, 553, 580
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	115, 145, 574
BseGI	GGATG	3 cut(s)	286, 371, 589
BseLI	CCNNNNNNNGG	5 cut(s)	181, 218, 425, 553, 580
BseMII	CTCAG	2 cut(s)	55, 375
BseNI	ACTGG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	203, 523, 557
BshNI	GGYRCC	2 cut(s)	126, 221
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	3 cut(s)	197, 305, 529
BslI	CCNNNNNNNGG	5 cut(s)	181, 218, 425, 553, 580
BsmFI	GGGAC	3 cut(s)	197, 305, 529
BsnI	GGCC	3 cut(s)	203, 523, 557
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	282, 337, 453, 604
BspANI	GGCC	3 cut(s)	203, 523, 557
BspCNI	CTCAG	2 cut(s)	54, 376
BspLI	GGNNCC	2 cut(s)	128, 223
BspPI	GGATC	3 cut(s)	277, 345, 612
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	126, 221
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	626
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	115, 145, 574
BssMI	GATC	4 cut(s)	282, 337, 453, 604
BssT1I	CCWWGG	3 cut(s)	115, 145, 574
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	18, 205
BstDEI	CTNAG	3 cut(s)	41, 328, 384
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	286, 371, 589
BstKTI	GATC	4 cut(s)	285, 340, 456, 607
BstMBI	GATC	4 cut(s)	282, 337, 453, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	282, 337
BstYI	RGATCY	2 cut(s)	282, 337
BsuRI	GGCC	3 cut(s)	203, 523, 557
BtsCI	GGATG	3 cut(s)	286, 371, 589
Cac8I	GCNNGC	2 cut(s)	18, 205
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	209, 429, 619
CviAII	CATG	3 cut(s)	228, 580, 610
CviQI	GTAC	3 cut(s)	209, 429, 619
DdeI	CTNAG	3 cut(s)	41, 328, 384
DpnI	GATC	4 cut(s)	284, 339, 455, 606
DpnII	GATC	4 cut(s)	282, 337, 453, 604
EaeI	YGGCCR	1 cut(s)	201
Eco130I	CCWWGG	3 cut(s)	115, 145, 574
Eco147I	AGGCCT	1 cut(s)	557
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	115, 145, 574
ErhI	CCWWGG	3 cut(s)	115, 145, 574
FaeI	CATG	3 cut(s)	231, 583, 613
FaqI	GGGAC	3 cut(s)	197, 305, 529
FatI	CATG	3 cut(s)	227, 579, 609
FokI	GGATG	3 cut(s)	273, 358, 596
FspBI	CTAG	2 cut(s)	180, 356
HaeIII	GGCC	3 cut(s)	203, 523, 557
HapII	CCGG	2 cut(s)	17, 219
Hin1II	CATG	3 cut(s)	231, 583, 613
HinfI	GANTC	5 cut(s)	185, 259, 393, 440, 482
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	2 cut(s)	35, 92
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	362, 383
HpyAV	CCTTC	3 cut(s)	107, 334, 429
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	41, 328, 384
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	231, 583, 613
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	282, 337, 453, 604
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	9 cut(s)	6, 30, 73, 217, 232, 375, 396, 505, 607
MaeI	CTAG	2 cut(s)	180, 356
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	284, 339, 455, 606
MboI	GATC	4 cut(s)	282, 337, 453, 604
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	2 cut(s)	282, 337
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	432, 445
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	4 cut(s)	179, 387, 449, 476
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	50, 77, 325, 547
Mox20I	TGGCCA	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	2 cut(s)	17, 219
MunI	CAATTG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	4 cut(s)	282, 337, 453, 604
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	231, 583, 613
NlaIV	GGNNCC	2 cut(s)	128, 223
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	557
PciI	ACATGT	1 cut(s)	609
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	580
PleI	GAGTC	4 cut(s)	179, 387, 448, 476
PpsI	GAGTC	4 cut(s)	179, 387, 448, 476
PscI	ACATGT	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	128, 223
PspPI	GGNCC	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	282, 337
RsaI	GTAC	3 cut(s)	210, 430, 620
RsaNI	GTAC	3 cut(s)	209, 429, 619
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	282, 337, 453, 604
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	4 cut(s)	179, 387, 449, 476
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	42, 181, 271, 336, 357, 538
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	432, 445
SseBI	AGGCCT	1 cut(s)	557
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	180, 356
StuI	AGGCCT	1 cut(s)	557
StyI	CCWWGG	3 cut(s)	115, 145, 574
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	262, 273, 480
TasI	AATT	2 cut(s)	432, 445
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	551
XceI	RCATGY	1 cut(s)	613
XspI	CTAG	2 cut(s)	180, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.