Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

12058459 .. 12059819

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTGACCATGAAGAGAAAAACCTCAGTAATGAGTATAAGGAACTCCTTCTTTCTCTCCCTAAAGAAAGAGGCTGGATAGCCCGTCACGAATACCAATACCAAGGCTTCTGGTGCCCAACAGCCGACACATTCCAAGCCATTGTCAATTTCCAAAAGCACTTCCAAGCTAGGGATTCCGACATAGTTGTCGCCAGCTTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGACTTTTGCTACTGTCAATCGACACCGTTTCGATATAAAGAACCATCCACTGCTCACTTCCAACTGTCACAATCTTGTGCGATTCTTTGAGTTGGATCTCTACGCAAACAACCAATTTCCTGATTTTTCATCCAATTTTCCTGAGCCAAGACTCTTCGCAACCCATATTCCTTTTCCTTCTTTGGGTACAATAAAGGAGTCAAACTGTAAGATTGTTTATGTTTGCAGAAACCCGTTCGACACATTTGTTTCTTTTTGGTATTTCGTAAACAAATCCAGGCCACAATCTTTAGGGCAATTGTCTCTTGATGAGGCCTTTGATAGGTATTGCCAAGGCATTGGAGGGTATGGTCCATTTTGGGATAACATTTTGGGTTACTGGAGTGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTCAAGTACGAGGACATGAAGAAAGATGTTGTATATCACTTGAAAAGATTGGCGAAGTTTATAGACTGCTCTTTCAGCGAAGAGGAGGAATGTAACGGTGTTTTTGAAGACATCGCAAAGCTTTGTTCTTTTGACACCATGAAGAAGTTGGAGATCAACAAAACCGGAACGTTTGTCATGAACTTGGAGAAGAAGAGCCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTCACCCCTGAGATGGAGGAGAGAATGTCCAAACTCATAGAAGAGAAGTTTGGTGGTTCAGGCTTGACTTTCAAACGGATTCCCGAGCTTCCAGCAGAATGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

332

Amino Acids

38.79

Weight (kDa)

6.28

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	59 - 317	1.9e-65	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	114, 212
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	421, 659
AfiI	CCNNNNNNNGG	5 cut(s)	172, 209, 416, 555, 901
AgsI	TTSAA	6 cut(s)	226, 628, 655, 694, 758, 961
AjnI	CCWGG	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	2 cut(s)	921, 953
AluBI	AGCT	6 cut(s)	170, 198, 624, 772, 863, 976
AluI	AGCT	6 cut(s)	170, 198, 624, 772, 863, 976
Alw26I	GTCTC	2 cut(s)	540, 625
AlwI	GGATC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	971
AoxI	GGCC	2 cut(s)	512, 546
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	883
AvaI	CYCGRG	1 cut(s)	971
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	114, 212
BbsI	GAAGAC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	864
BccI	CCATC	2 cut(s)	285, 895
BciT130I	CCWGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	540, 625
BfaI	CTAG	2 cut(s)	171, 994
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	116, 214
BmrFI	CCNGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	765
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	2 cut(s)	375, 864
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	103, 565
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	4 cut(s)	864, 894, 899, 929
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 209, 416, 555, 901
Bse1I	ACTGG	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	2 cut(s)	103, 565
BseGI	GGATG	2 cut(s)	277, 362
BseLI	CCNNNNNNNGG	5 cut(s)	172, 209, 416, 555, 901
BseMII	CTCAG	4 cut(s)	40, 366, 855, 888
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	2 cut(s)	749, 920
BseSI	GKGCMC	1 cut(s)	119
BshFI	GGCC	2 cut(s)	514, 548
BshNI	GGYRCC	2 cut(s)	114, 212
BsiHKCI	CYCGRG	1 cut(s)	971
BsiSI	CCGG	2 cut(s)	210, 816
BslI	CCNNNNNNNGG	5 cut(s)	172, 209, 416, 555, 901
BsmAI	GTCTC	2 cut(s)	540, 625
BsnI	GGCC	2 cut(s)	514, 548
Bso31I	GGTCTC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	328, 804
BspANI	GGCC	2 cut(s)	514, 548
BspCNI	CTCAG	4 cut(s)	39, 367, 856, 889
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	116, 214
BspPI	GGATC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	839
BspT107I	GGYRCC	2 cut(s)	114, 212
BspTNI	GGTCTC	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	2 cut(s)	103, 565
BssMI	GATC	2 cut(s)	328, 804
BssT1I	CCWWGG	2 cut(s)	103, 565
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	5 cut(s)	247, 260, 299, 440, 749
Bst6I	CTCTTC	6 cut(s)	9, 392, 623, 726, 839, 924
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	4 cut(s)	26, 375, 864, 897
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstF5I	GGATG	2 cut(s)	277, 362
BstKTI	GATC	2 cut(s)	331, 807
BstMAI	GTCTC	2 cut(s)	540, 625
BstMBI	GATC	2 cut(s)	328, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 726
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	509
BstSLI	GKGCMC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	2 cut(s)	572, 987
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	514, 548
BtgZI	GCGATG	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	277, 362
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	420, 658
CviAII	CATG	5 cut(s)	11, 219, 667, 790, 829
CviQI	GTAC	2 cut(s)	420, 658
DdeI	CTNAG	4 cut(s)	26, 375, 864, 897
DpnI	GATC	2 cut(s)	330, 806
DpnII	GATC	2 cut(s)	328, 804
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	6 cut(s)	9, 392, 623, 726, 839, 924
EarI	CTCTTC	6 cut(s)	9, 392, 623, 726, 839, 924
Eco130I	CCWWGG	2 cut(s)	103, 565
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	971
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	103, 565
ErhI	CCWWGG	2 cut(s)	103, 565
FaeI	CATG	5 cut(s)	14, 222, 670, 793, 832
FatI	CATG	5 cut(s)	10, 218, 666, 789, 828
FokI	GGATG	2 cut(s)	264, 349
FspBI	CTAG	2 cut(s)	171, 994
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	514, 548
HapII	CCGG	2 cut(s)	210, 816
Hin1II	CATG	5 cut(s)	14, 222, 670, 793, 832
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	5 cut(s)	176, 315, 384, 431, 967
HpaI	GTTAAC	1 cut(s)	883
HpaII	CCGG	2 cut(s)	210, 816
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	502, 883
Hpy188I	TCNGA	2 cut(s)	181, 857
Hpy188III	TCNNGA	6 cut(s)	89, 353, 374, 539, 829, 971
Hpy8I	GTNNAC	2 cut(s)	502, 883
HpyAV	CCTTC	2 cut(s)	59, 420
HpyCH4III	ACNGT	5 cut(s)	247, 260, 299, 440, 749
HpyCH4IV	ACGT	1 cut(s)	821
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 726
HpyF3I	CTNAG	4 cut(s)	26, 375, 864, 897
HpySE526I	ACGT	1 cut(s)	821
Hsp92II	CATG	5 cut(s)	14, 222, 670, 793, 832
KspAI	GTTAAC	1 cut(s)	883
Kzo9I	GATC	2 cut(s)	328, 804
LguI	GCTCTTC	1 cut(s)	839
MaeI	CTAG	2 cut(s)	171, 994
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	4 cut(s)	86, 299, 608, 743
MalI	GATC	2 cut(s)	330, 806
MboI	GATC	2 cut(s)	328, 804
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	4 cut(s)	148, 347, 367, 530
MlyI	GAGTC	2 cut(s)	378, 440
MmeI	TCCRAC	4 cut(s)	204, 306, 318, 780
MnlI	CCTC	9 cut(s)	35, 65, 538, 569, 655, 727, 730, 859, 898
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	882
MspI	CCGG	2 cut(s)	210, 816
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	114, 726
NdeII	GATC	2 cut(s)	328, 804
NlaIII	CATG	5 cut(s)	14, 222, 670, 793, 832
NlaIV	GGNNCC	2 cut(s)	116, 214
NmuCI	GTSAC	2 cut(s)	86, 299
PagI	TCATGA	1 cut(s)	828
PceI	AGGCCT	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	176, 315, 967
PleI	GAGTC	2 cut(s)	378, 439
PpsI	GAGTC	2 cut(s)	378, 439
Psp1406I	AACGTT	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	116, 214
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	421, 659
RsaNI	GTAC	2 cut(s)	420, 658
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	1 cut(s)	882
Sau3AI	GATC	2 cut(s)	328, 804
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	2 cut(s)	378, 440
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	119
SinI	GGWCC	1 cut(s)	584
Sse9I	AATT	4 cut(s)	148, 347, 367, 530
SseBI	AGGCCT	1 cut(s)	548
SspMI	CTAG	2 cut(s)	171, 994
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	2 cut(s)	103, 565
TaaI	ACNGT	5 cut(s)	247, 260, 299, 440, 749
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	3 cut(s)	253, 264, 471
TasI	AATT	4 cut(s)	148, 347, 367, 530
TfiI	GAWTC	3 cut(s)	176, 315, 967
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	86, 299
Tsp45I	GTSAC	2 cut(s)	86, 299
TspDTI	ATGAA	5 cut(s)	27, 351, 683, 806, 845
TspGWI	ACGGA	1 cut(s)	979
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	796
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	171, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.