Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

11580353 .. 11581276

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGAAAAAAGCCTCAGTGCACAAGGAACTCCTTCATTCTCTCCCCAAAGAAAGAGGCTGGAGATCCATTCACCAATATCACTTCCAAAACTTTTGGTGCCCATCTGTAGATATAGAAGCCGTAATCTCTTTCCAAAAGCACTTCCAAGCTAGGGATTCCGACATAGTTGTCGCCAGCTTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGACATTTGCTGTTGTGAACCGACACCGTTTCGATATAAAGGCACATCCTTTGCTCACTTCCAACCCTCATCATCTTGTGCCCTTCTTTGAGATGGATCTCTATATAAACAACCGAGTTCCTGATTTCTCATCCAAGTTTGCTGAGCCAACACTCTTTGGCACCCATATTCCTTTTCCTTCTTTGGGTACAATTAAAGAGTCCAATTGTAAGATCATTTATGTTTGCAGAAACCCATTTGACTCGTTTGTTTCTGCTTGGCATTTCTTCAACAAAGTCAAGCTACAATCCCAAGCTCCATTGTCCCTCGATGAGGCCTTTGATAGGTACTGCCAAGGCATGGATGCTTTTGGTCCATTTTGGGATCACATTTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTCAGAATGTGCTATTCTTGAAGTACGAGGACATGAATCAAGATGTTGTGTCGCACTTGAAAAGATTGGCTAAGTTTCTAGACTACCCTTTCACCGAGGAGGAGGAGAGAAACGGTGTGATTGAGGACATATCAAAGATGTGTTCTTTTGAGACCTTGAAGAAGTTGGATATCAACAAAACTGGAACGTTTGTCAATAACATAGAGAACAGCAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTAAGATGGTGGAGAGAATGTCCAAAGTCATAGAAGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

308

Amino Acids

35.94

Weight (kDa)

8.64

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	53 - 307	2.6e-65	Sulfotransferase domain
Sulfotransfer_3	PF13469	140 - 238	1.8e-07	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB1I	GGYRCC	3 cut(s)	99, 194, 374
AccB7I	CCANNNNNTGG	1 cut(s)	553
AclI	AACGTT	1 cut(s)	803
AclWI	GGATC	3 cut(s)	60, 318, 585
AfaI	GTAC	4 cut(s)	403, 542, 593, 641
AfiI	CCNNNNNNNGG	7 cut(s)	154, 191, 398, 526, 537, 553, 886
AgsI	TTSAA	6 cut(s)	208, 484, 610, 637, 676, 775
AluBI	AGCT	6 cut(s)	152, 180, 496, 509, 606, 848
AluI	AGCT	6 cut(s)	152, 180, 496, 509, 606, 848
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	607, 761
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	60, 318, 585
AoxI	GGCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	20
Asp700I	GAANNNNTTC	2 cut(s)	33, 836
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	65, 700
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	3 cut(s)	24, 104, 297
BanI	GGYRCC	3 cut(s)	99, 194, 374
Bbv12I	GWGCWC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	849
BccI	CCATC	3 cut(s)	112, 301, 880
BceAI	ACGGC	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	607, 761
BfaI	CTAG	2 cut(s)	153, 695
BfmI	CTRYAG	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	3 cut(s)	101, 196, 376
BmsI	GCATC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	849
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaI	GGTCTC	2 cut(s)	607, 761
BsaJI	CCNNGG	2 cut(s)	547, 711
BsaXI	ACNNNNNCTCC	4 cut(s)	849, 879, 884, 914
Bsc4I	CCNNNNNNNGG	7 cut(s)	154, 191, 398, 526, 537, 553, 886
Bse1I	ACTGG	2 cut(s)	599, 802
BseDI	CCNNGG	2 cut(s)	547, 711
BseGI	GGATG	3 cut(s)	259, 344, 562
BseLI	CCNNNNNNNGG	7 cut(s)	154, 191, 398, 526, 537, 553, 886
BseMII	CTCAG	4 cut(s)	30, 348, 632, 840
BseNI	ACTGG	2 cut(s)	599, 802
BseRI	GAGGAG	3 cut(s)	728, 731, 734
BseSI	GKGCMC	3 cut(s)	24, 104, 297
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	3 cut(s)	99, 194, 374
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	7 cut(s)	154, 191, 398, 526, 537, 553, 886
BsmAI	GTCTC	2 cut(s)	607, 761
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	530
Bso31I	GGTCTC	2 cut(s)	607, 761
Bsp1286I	GDGCHC	3 cut(s)	24, 104, 297
Bsp143I	GATC	4 cut(s)	65, 310, 426, 577
Bsp1720I	GCTNAGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	4 cut(s)	29, 349, 631, 841
BspLI	GGNNCC	3 cut(s)	101, 196, 376
BspPI	GGATC	3 cut(s)	60, 318, 585
BspT107I	GGYRCC	3 cut(s)	99, 194, 374
BspTNI	GGTCTC	2 cut(s)	607, 761
BsrI	ACTGG	2 cut(s)	599, 802
BssECI	CCNNGG	2 cut(s)	547, 711
BssMI	GATC	4 cut(s)	65, 310, 426, 577
BssT1I	CCWWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	242, 731
Bst6I	CTCTTC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	6 cut(s)	16, 357, 618, 687, 849, 882
BstENI	CCTNNNNNAGG	2 cut(s)	524, 535
BstF5I	GGATG	3 cut(s)	259, 344, 562
BstKTI	GATC	4 cut(s)	68, 313, 429, 580
BstMAI	GTCTC	2 cut(s)	607, 761
BstMBI	GATC	4 cut(s)	65, 310, 426, 577
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	3 cut(s)	24, 104, 297
BstX2I	RGATCY	2 cut(s)	65, 310
BstYI	RGATCY	2 cut(s)	65, 310
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	259, 344, 562
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	4 cut(s)	402, 541, 592, 640
CviAII	CATG	3 cut(s)	201, 553, 649
CviQI	GTAC	4 cut(s)	402, 541, 592, 640
DdeI	CTNAG	6 cut(s)	16, 357, 618, 687, 849, 882
DpnI	GATC	4 cut(s)	67, 312, 428, 579
DpnII	GATC	4 cut(s)	65, 310, 426, 577
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	607, 761
Eco32I	GATATC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	566
EcoNI	CCTNNNNNAGG	2 cut(s)	524, 535
EcoRV	GATATC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	3 cut(s)	204, 556, 652
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	3 cut(s)	200, 552, 648
FokI	GGATG	3 cut(s)	246, 331, 569
FspBI	CTAG	2 cut(s)	153, 695
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	3 cut(s)	204, 556, 652
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	4 cut(s)	158, 413, 455, 652
HpaI	GTTAAC	1 cut(s)	868
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	65, 700
Hpy166II	GTNNAC	3 cut(s)	22, 232, 868
Hpy188I	TCNGA	3 cut(s)	163, 621, 842
Hpy188III	TCNNGA	4 cut(s)	335, 634, 656, 695
Hpy8I	GTNNAC	3 cut(s)	22, 232, 868
HpyAV	CCTTC	3 cut(s)	44, 307, 402
HpyCH4III	ACNGT	2 cut(s)	242, 731
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	2 cut(s)	22, 441
HpyF3I	CTNAG	6 cut(s)	16, 357, 618, 687, 849, 882
HpySE526I	ACGT	1 cut(s)	803
Hsp92II	CATG	3 cut(s)	204, 556, 652
KspAI	GTTAAC	1 cut(s)	868
Kzo9I	GATC	4 cut(s)	65, 310, 426, 577
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	7 cut(s)	46, 190, 205, 348, 580, 783, 848
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	153, 695
MaeII	ACGT	1 cut(s)	803
MalI	GATC	4 cut(s)	67, 312, 428, 579
MboI	GATC	4 cut(s)	65, 310, 426, 577
MboII	GAAGA	4 cut(s)	16, 472, 622, 787
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	65, 310
MhlI	GDGCHC	3 cut(s)	24, 104, 297
MluCI	AATT	2 cut(s)	405, 418
MlyI	GAGTC	2 cut(s)	422, 449
MmeI	TCCRAC	3 cut(s)	186, 300, 762
MroXI	GAANNNNTTC	2 cut(s)	33, 836
MseI	TTAA	2 cut(s)	408, 867
MspI	CCGG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	418
NdeII	GATC	4 cut(s)	65, 310, 426, 577
NlaIII	CATG	3 cut(s)	204, 556, 652
NlaIV	GGNNCC	3 cut(s)	101, 196, 376
PceI	AGGCCT	1 cut(s)	530
PdmI	GAANNNNTTC	2 cut(s)	33, 836
PfeI	GAWTC	2 cut(s)	158, 652
PflMI	CCANNNNNTGG	1 cut(s)	553
PleI	GAGTC	2 cut(s)	421, 449
PpsI	GAGTC	2 cut(s)	421, 449
Psp1406I	AACGTT	1 cut(s)	803
PspN4I	GGNNCC	3 cut(s)	101, 196, 376
PspPI	GGNCC	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	65, 310
RsaI	GTAC	4 cut(s)	403, 542, 593, 641
RsaNI	GTAC	4 cut(s)	402, 541, 592, 640
SaqAI	TTAA	2 cut(s)	408, 867
Sau3AI	GATC	4 cut(s)	65, 310, 426, 577
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	2 cut(s)	422, 449
SduI	GDGCHC	3 cut(s)	24, 104, 297
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	2 cut(s)	405, 418
SseBI	AGGCCT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	153, 695
StuI	AGGCCT	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	242, 731
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	2 cut(s)	246, 522
TasI	AATT	2 cut(s)	405, 418
TfiI	GAWTC	2 cut(s)	158, 652
Tru1I	TTAA	2 cut(s)	408, 867
Tru9I	TTAA	2 cut(s)	408, 867
TscAI	CASTG	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	17, 26, 665
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	553
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	566
XagI	CCTNNNNNAGG	2 cut(s)	524, 535
XbaI	TCTAGA	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	33, 836
XspI	CTAG	2 cut(s)	153, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.