Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

22722496 .. 22723794

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTGAAAATCAACCTGCTGACGATGAAGAAAAGAGCCTTAGTAATGAGTGTAAGGAACTCCTTCTTTCTCTCCCCAAAGAAAGAGGTTGGAGAACCCTTCACCAATATCAATTCCAAGGCTTTTGGTGCGCATCAGCAGCAATCGAAGCCGTAATCTCATTCCAAAAGCACTTCCAAGCTAGGGACTCCGACATAGTTGTGGCCAGCCTACCCAAATCCGGCACCATGTGGTTGAAAGCCTTGACTTTTGCTATTGTGAATCGACACCGTTTCGCAATAAAGACCCATCCGTTGCTCACTTCCAACCCTCATAATCTTGTGCCATTCTTTGAGTTCACTCTGTATGCAAAAAACCTAGTTCCGGATCTCTCCGAGTTTCCTGAGCCAAGACTCTTTGGGACTCATATTCCTTTTCCTTCTTTGGGTACAATCACAGAGTCTAACTGTAAGATCGTTTATGTTTGCAGAAACCCATTTGACACATTTATTTCTTCTTGGCATTTCTTTGACAAAGTCAGGCCGCAACATCAAGCTCCATTGTCCCTTGATGAGGCCTTCGATATGTATTGCCGAGGCATGAGTGCGTTTGGTCCATGGTGGGATCACATTTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTCAGAATATGTTATTCTTGAAGTACGAGGACATGGCGGAAGATGTTGTGTTGCACTTGAAAAGATTGGCCAAGTTTTTAGAGTATCCTTTCACTTTGGAGGAAGAGAGAGATGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGACTTTGGAGATCAACAAAACTGGCACGACTGTCAAGAATGTTGAGAATAAGAACATGTTCAGAAAAGCTGAGGTGGGAGATTGGGTAAACTATTTGACCCCTAAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAACCTGGGCGGTTCAGGCTTGACATTCAAAGTGATTTCTGAGGTAGCAAATCCTGTCGAGCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

336

Amino Acids

38.9

Weight (kDa)

5.97

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	63 - 320	1.7e-69	Sulfotransferase domain
Sulfotransfer_3	PF13469	149 - 246	2.7e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	3 cut(s)	524, 680, 951
AclWI	GGATC	2 cut(s)	375, 612
AcoI	YGGCCR	2 cut(s)	204, 711
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	430, 620, 668
AfiI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	6 cut(s)	238, 637, 664, 703, 767, 970
AjnI	CCWGG	1 cut(s)	945
AluBI	AGCT	5 cut(s)	182, 536, 633, 781, 872
AluI	AGCT	5 cut(s)	182, 536, 633, 781, 872
Alw26I	GTCTC	2 cut(s)	634, 788
AlwI	GGATC	2 cut(s)	375, 612
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	4 cut(s)	204, 521, 555, 711
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	63, 860
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	2 cut(s)	206, 713
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	774, 809
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	297, 749, 904
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	947
BciVI	GTATCC	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	634, 788
BfaI	CTAG	2 cut(s)	183, 359
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	2 cut(s)	141, 524
BlsI	GCNGC	2 cut(s)	142, 525
Bme1390I	CCNGG	1 cut(s)	947
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	947
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	774, 809
Bpu10I	CCTNAGC	2 cut(s)	384, 873
BsaI	GGTCTC	2 cut(s)	634, 788
BsaJI	CCNNGG	4 cut(s)	118, 574, 596, 946
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	4 cut(s)	873, 903, 908, 938
Bsc4I	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
Bse1I	ACTGG	2 cut(s)	626, 829
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	947
BseDI	CCNNGG	4 cut(s)	118, 574, 596, 946
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
BseMII	CTCAG	4 cut(s)	375, 659, 864, 972
BseNI	ACTGG	2 cut(s)	626, 829
BseRI	GAGGAG	1 cut(s)	929
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	4 cut(s)	206, 523, 557, 713
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	222, 365
BslFI	GGGAC	3 cut(s)	200, 415, 529
BslI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
BsmAI	GTCTC	2 cut(s)	634, 788
BsmFI	GGGAC	3 cut(s)	200, 415, 529
BsnI	GGCC	4 cut(s)	206, 523, 557, 713
Bso31I	GGTCTC	2 cut(s)	634, 788
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	367, 453, 604, 813
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	3 cut(s)	524, 680, 951
BspANI	GGCC	4 cut(s)	206, 523, 557, 713
BspCNI	CTCAG	4 cut(s)	376, 658, 865, 973
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	375, 612
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	634, 788
BsrI	ACTGG	2 cut(s)	626, 829
BssECI	CCNNGG	4 cut(s)	118, 574, 596, 946
BssMI	GATC	4 cut(s)	367, 453, 604, 813
BssT1I	CCWWGG	2 cut(s)	118, 596
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	3 cut(s)	272, 449, 835
Bst6I	CTCTTC	2 cut(s)	632, 741
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	6 cut(s)	41, 384, 645, 873, 906, 981
BstDSI	CCRYGG	1 cut(s)	596
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	370, 456, 607, 816
BstMAI	GTCTC	2 cut(s)	634, 788
BstMBI	GATC	4 cut(s)	367, 453, 604, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 957
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	945
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	2 cut(s)	774, 809
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	4 cut(s)	206, 523, 557, 713
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	429, 619, 667
CviAII	CATG	6 cut(s)	229, 580, 597, 676, 799, 859
CviQI	GTAC	3 cut(s)	429, 619, 667
DdeI	CTNAG	6 cut(s)	41, 384, 645, 873, 906, 981
DpnI	GATC	4 cut(s)	369, 455, 606, 815
DpnII	GATC	4 cut(s)	367, 453, 604, 813
DraIII	CACNNNGTG	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	204, 711
Eam1104I	CTCTTC	2 cut(s)	632, 741
EarI	CTCTTC	2 cut(s)	632, 741
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	2 cut(s)	118, 596
Eco147I	AGGCCT	1 cut(s)	557
Eco31I	GGTCTC	2 cut(s)	634, 788
Eco47I	GGWCC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	945
EcoT14I	CCWWGG	2 cut(s)	118, 596
ErhI	CCWWGG	2 cut(s)	118, 596
FaeI	CATG	6 cut(s)	232, 583, 600, 679, 802, 862
FaqI	GGGAC	3 cut(s)	200, 415, 529
FatI	CATG	6 cut(s)	228, 579, 596, 675, 798, 858
Fnu4HI	GCNGC	2 cut(s)	141, 524
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	141, 524
FspAI	RTGCGCAY	1 cut(s)	133
FspBI	CTAG	2 cut(s)	183, 359
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	141, 524
HaeIII	GGCC	4 cut(s)	206, 523, 557, 713
HapII	CCGG	2 cut(s)	222, 365
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	6 cut(s)	232, 583, 600, 679, 802, 862
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	188, 262, 393, 403, 440
HpaII	CCGG	2 cut(s)	222, 365
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	339, 892
Hpy188I	TCNGA	5 cut(s)	193, 376, 648, 866, 982
Hpy188III	TCNNGA	4 cut(s)	365, 383, 661, 838
Hpy8I	GTNNAC	2 cut(s)	339, 892
HpyAV	CCTTC	4 cut(s)	74, 110, 429, 568
HpyCH4III	ACNGT	3 cut(s)	272, 449, 835
HpyCH4V	TGCA	3 cut(s)	350, 468, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 957
HpyF3I	CTNAG	6 cut(s)	41, 384, 645, 873, 906, 981
Hsp92II	CATG	6 cut(s)	232, 583, 600, 679, 802, 862
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	367, 453, 604, 813
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	183, 359
MalI	GATC	4 cut(s)	369, 455, 606, 815
MboI	GATC	4 cut(s)	367, 453, 604, 813
MboII	GAAGA	8 cut(s)	41, 486, 649, 695, 758, 779, 814, 950
MflI	RGATCY	1 cut(s)	367
MlsI	TGGCCA	2 cut(s)	206, 713
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	2 cut(s)	206, 713
MlyI	GAGTC	4 cut(s)	182, 387, 397, 449
MmeI	TCCRAC	3 cut(s)	71, 216, 330
Mox20I	TGGCCA	2 cut(s)	206, 713
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	2 cut(s)	63, 860
MscI	TGGCCA	2 cut(s)	206, 713
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	2 cut(s)	206, 713
MspI	CCGG	2 cut(s)	222, 365
MspR9I	CCNGG	1 cut(s)	947
MvaI	CCWGG	1 cut(s)	947
MwoI	GCNNNNNNNGC	4 cut(s)	129, 140, 149, 957
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	4 cut(s)	367, 453, 604, 813
NlaIII	CATG	6 cut(s)	232, 583, 600, 679, 802, 862
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	599
NsbI	TGCGCA	1 cut(s)	133
NspI	RCATGY	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	557
PciI	ACATGT	1 cut(s)	858
PdmI	GAANNNNTTC	2 cut(s)	63, 860
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	142, 525
PleI	GAGTC	4 cut(s)	182, 387, 397, 448
PpsI	GAGTC	4 cut(s)	182, 387, 397, 448
PscI	ACATGT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	945
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	3 cut(s)	430, 620, 668
RsaNI	GTAC	3 cut(s)	429, 619, 667
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	141, 524
Sau3AI	GATC	4 cut(s)	367, 453, 604, 813
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	4 cut(s)	182, 387, 397, 449
ScrFI	CCNGG	1 cut(s)	947
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	3 cut(s)	524, 680, 951
SspMI	CTAG	2 cut(s)	183, 359
StuI	AGGCCT	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	945
StyI	CCWWGG	2 cut(s)	118, 596
TaaI	ACNGT	3 cut(s)	272, 449, 835
TaqI	TCGA	4 cut(s)	147, 265, 561, 999
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	42, 815
TspGWI	ACGGA	1 cut(s)	282
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	551
XceI	RCATGY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	63, 860
XspI	CTAG	2 cut(s)	183, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.