Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

49952475 .. 49952921

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTATTGCCAAGGCGTGGATGTGTATGGTCCATTTTGGGATCACATGTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTATATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCATTGAGGAGGACGAGAGAAACGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTCAGACCATGAAGAAGTTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGGAGCAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTAGTTCAGGCTTGACTTTCAAAGGGACTCCCGAGCTAGCAGATCATGTCCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

148

Amino Acids

17.27

Weight (kDa)

5.94

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	2 - 131	1.4e-31	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	2 cut(s)	56, 104
AfiI	CCNNNNNNNGG	2 cut(s)	16, 346
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	6 cut(s)	73, 100, 139, 203, 277, 406
AluBI	AGCT	4 cut(s)	69, 217, 308, 421
AluI	AGCT	4 cut(s)	69, 217, 308, 421
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	29
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	116, 340
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	422, 445
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	29
BmtI	GCTAGC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 346
Bse1I	ACTGG	2 cut(s)	62, 265
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	16, 346
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	62, 265
BseRI	GAGGAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	16, 346
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	40, 249, 427
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	62, 265
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	40, 249, 427
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	3 cut(s)	43, 252, 430
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	40, 249, 427
BstNSI	RCATGY	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	55, 103
CviAII	CATG	5 cut(s)	46, 112, 235, 280, 431
CviJI	RGCY	6 cut(s)	69, 149, 217, 308, 396, 421
CviKI_1	RGCY	6 cut(s)	69, 149, 217, 308, 396, 421
CviQI	GTAC	2 cut(s)	55, 103
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	42, 251, 429
DpnII	GATC	3 cut(s)	40, 249, 427
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	5 cut(s)	49, 115, 238, 283, 434
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	5 cut(s)	45, 111, 234, 279, 430
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	2 cut(s)	422, 445
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	49, 115, 238, 283, 434
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	412
HpaI	GTTAAC	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	231, 302
Hpy188III	TCNNGA	3 cut(s)	97, 274, 416
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	5 cut(s)	49, 115, 238, 283, 434
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	40, 249, 427
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	4 cut(s)	43, 246, 308, 378
MaeI	CTAG	2 cut(s)	422, 445
MaeII	ACGT	1 cut(s)	266
MalI	GATC	3 cut(s)	42, 251, 429
MboI	GATC	3 cut(s)	40, 249, 427
MboII	GAAGA	5 cut(s)	85, 127, 215, 250, 386
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	100, 169, 172, 304
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	149
NdeII	GATC	3 cut(s)	40, 249, 427
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	5 cut(s)	49, 115, 238, 283, 434
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	45
Psp1406I	AACGTT	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	56, 104
RsaNI	GTAC	2 cut(s)	55, 103
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	40, 249, 427
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	406
SetI	ASST	8 cut(s)	71, 82, 219, 269, 297, 310, 315, 423
SinI	GGWCC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	422, 445
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	128, 160, 251
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	29
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	422, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.