Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

22703512 .. 22706041

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTGAAAATCAACCTGCTGACGATGAAGAAAAGAGCCTTAGTAATGAGTGTAAGGAACTCCTTCTTTCTCTCCCCAAAGAAAGAGGTTGGAGAACCCTTCACCAATATCAATTCCAAGGCTTTTGGTGCGCATCAGCAGCAATCGAAGCCGTAATCTCATTCCAAAAGCACTTCCAAGCTAGGGACTCCGACATAGTTGTGGCCAGCCTACCCAAATCCGGCACCATGTGGTTGAAAGCCTTGACTTTTGCTATTGTGAATCGACACCGTTTCGCAATAAAGACCCATCCGTTGCTCACTTCCAACCCTCATAATCTTGTGCCATTCTTTGAGTTCACTCTGTATGCAAAAAACCTAGTTCCGGATCTCTCCGAGTTTCCTGAGCCAAGACTCTTTGGGACTCATATTCCTTTTCCTTCTTTGGGTACAATCACAGAGTCTAACTGTAAGATCGTTTATGTTTGCAGAAACCCATTTGACACATTTATTTCTTCTTGGCATTTCTTTGACAAAGTCAGGCCGCAACATCAAGCTCCATTGTCCCTTGATGAGGCCTTCGATATGTATTGCCGAGGCATGAGTGCGTTTGGTCCATGGTGGGATCACATTTTGGGGTACTGGAAAGAGAGCTTGAAGAGACCTCAGAATATGTTATTCTTGAAGTACGAGGACATGGCGGAAGATGTTGTGTTGCACTTGAAAAGATTGGCTAAGTTTTTAGACTACCCTTTCACTATGGAGGAGGAGAGAAATGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGACTTTGGAGATCAACAAAACTGGCATGACTACCATGAAGTTTGAGAATAAGGCCCTATTCAGAAAAGCTGAAGTGGGAGATTGGGTTAACTATTTCACCCCTAAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTGGTTCAGGCTTGACATTCAAAGTGATTCCCGAGCTATCAGATCCTGTGCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

336

Amino Acids

39.02

Weight (kDa)

6.09

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	63 - 320	1.2e-69	Sulfotransferase domain
Sulfotransfer_3	PF13469	149 - 246	1.9e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	2 cut(s)	524, 680
AclWI	GGATC	3 cut(s)	375, 612, 986
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	894
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	430, 620, 668
AfiI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
AgsI	TTSAA	6 cut(s)	238, 637, 664, 703, 767, 970
AluBI	AGCT	6 cut(s)	182, 536, 633, 781, 872, 985
AluI	AGCT	6 cut(s)	182, 536, 633, 781, 872, 985
Alw26I	GTCTC	2 cut(s)	634, 788
AlwI	GGATC	3 cut(s)	375, 612, 986
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	1 cut(s)	980
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	4 cut(s)	204, 521, 555, 855
ApeKI	GCWGC	2 cut(s)	140, 1000
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	593, 856
AsuHPI	GGTGA	2 cut(s)	95, 892
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	774, 809
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	297, 904
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	634, 788
BfaI	CTAG	3 cut(s)	183, 359, 1009
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	3 cut(s)	141, 524, 1001
BlsI	GCNGC	3 cut(s)	142, 525, 1002
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	2 cut(s)	593, 856
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	774, 809
Bpu10I	CCTNAGC	1 cut(s)	384
BsaI	GGTCTC	2 cut(s)	634, 788
BsaJI	CCNNGG	3 cut(s)	118, 574, 596
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	4 cut(s)	873, 903, 908, 938
Bsc4I	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
Bse1I	ACTGG	2 cut(s)	626, 829
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	118, 574, 596
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
BseMII	CTCAG	2 cut(s)	375, 659
BseNI	ACTGG	2 cut(s)	626, 829
BseRI	GAGGAG	3 cut(s)	758, 761, 929
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	4 cut(s)	206, 523, 557, 857
BshNI	GGYRCC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	2 cut(s)	222, 365
BslFI	GGGAC	3 cut(s)	200, 415, 529
BslI	CCNNNNNNNGG	6 cut(s)	184, 221, 364, 425, 553, 910
BsmAI	GTCTC	2 cut(s)	634, 788
BsmFI	GGGAC	3 cut(s)	200, 415, 529
BsnI	GGCC	4 cut(s)	206, 523, 557, 857
Bso31I	GGTCTC	2 cut(s)	634, 788
BsoBI	CYCGRG	1 cut(s)	980
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	367, 453, 604, 813, 991
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	2 cut(s)	524, 680
BspANI	GGCC	4 cut(s)	206, 523, 557, 857
BspCNI	CTCAG	2 cut(s)	376, 658
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	3 cut(s)	375, 612, 986
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	634, 788
BsrI	ACTGG	2 cut(s)	626, 829
BssECI	CCNNGG	3 cut(s)	118, 574, 596
BssMI	GATC	5 cut(s)	367, 453, 604, 813, 991
BssT1I	CCWWGG	2 cut(s)	118, 596
Bst4CI	ACNGT	2 cut(s)	272, 449
Bst6I	CTCTTC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	5 cut(s)	41, 384, 645, 714, 906
BstDSI	CCRYGG	1 cut(s)	596
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	5 cut(s)	370, 456, 607, 816, 994
BstMAI	GTCTC	2 cut(s)	634, 788
BstMBI	GATC	5 cut(s)	367, 453, 604, 813, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 140, 149
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	2 cut(s)	774, 809
BstX2I	RGATCY	2 cut(s)	367, 991
BstYI	RGATCY	2 cut(s)	367, 991
BsuRI	GGCC	4 cut(s)	206, 523, 557, 857
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	593, 856
Csp6I	GTAC	3 cut(s)	429, 619, 667
CviAII	CATG	7 cut(s)	229, 580, 597, 676, 799, 829, 838
CviQI	GTAC	3 cut(s)	429, 619, 667
DdeI	CTNAG	5 cut(s)	41, 384, 645, 714, 906
DpnI	GATC	5 cut(s)	369, 455, 606, 815, 993
DpnII	GATC	5 cut(s)	367, 453, 604, 813, 991
DraIII	CACNNNGTG	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	2 cut(s)	118, 596
Eco147I	AGGCCT	1 cut(s)	557
Eco31I	GGTCTC	2 cut(s)	634, 788
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	980
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	118, 596
ErhI	CCWWGG	2 cut(s)	118, 596
FaeI	CATG	7 cut(s)	232, 583, 600, 679, 802, 832, 841
FaqI	GGGAC	3 cut(s)	200, 415, 529
FatI	CATG	7 cut(s)	228, 579, 596, 675, 798, 828, 837
Fnu4HI	GCNGC	3 cut(s)	141, 524, 1001
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	141, 524, 1001
FspAI	RTGCGCAY	1 cut(s)	133
FspBI	CTAG	3 cut(s)	183, 359, 1009
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	3 cut(s)	141, 524, 1001
HaeIII	GGCC	4 cut(s)	206, 523, 557, 857
HapII	CCGG	2 cut(s)	222, 365
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	7 cut(s)	232, 583, 600, 679, 802, 832, 841
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	6 cut(s)	188, 262, 393, 403, 440, 976
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	2 cut(s)	222, 365
HphI	GGTGA	2 cut(s)	95, 892
Hpy166II	GTNNAC	2 cut(s)	339, 892
Hpy188I	TCNGA	5 cut(s)	193, 376, 648, 866, 991
Hpy188III	TCNNGA	4 cut(s)	365, 383, 661, 980
Hpy8I	GTNNAC	2 cut(s)	339, 892
HpyAV	CCTTC	4 cut(s)	74, 110, 429, 568
HpyCH4III	ACNGT	2 cut(s)	272, 449
HpyCH4V	TGCA	4 cut(s)	350, 468, 697, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 140, 149
HpyF3I	CTNAG	5 cut(s)	41, 384, 645, 714, 906
Hsp92II	CATG	7 cut(s)	232, 583, 600, 679, 802, 832, 841
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	367, 453, 604, 813, 991
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	9 cut(s)	30, 220, 235, 378, 396, 505, 607, 810, 942
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	3 cut(s)	183, 359, 1009
MalI	GATC	5 cut(s)	369, 455, 606, 815, 993
MboI	GATC	5 cut(s)	367, 453, 604, 813, 991
MboII	GAAGA	7 cut(s)	41, 486, 649, 695, 779, 814, 950
MflI	RGATCY	2 cut(s)	367, 991
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	4 cut(s)	182, 387, 397, 449
MmeI	TCCRAC	3 cut(s)	71, 216, 330
MnlI	CCTC	9 cut(s)	80, 321, 547, 569, 654, 664, 736, 739, 907
Mox20I	TGGCCA	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	891
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	2 cut(s)	222, 365
MwoI	GCNNNNNNNGC	3 cut(s)	129, 140, 149
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	5 cut(s)	367, 453, 604, 813, 991
NlaIII	CATG	7 cut(s)	232, 583, 600, 679, 802, 832, 841
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	599
NsbI	TGCGCA	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	262, 976
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	142, 525, 1002
PleI	GAGTC	4 cut(s)	182, 387, 397, 448
PpsI	GAGTC	4 cut(s)	182, 387, 397, 448
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	593, 856
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	367, 991
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	3 cut(s)	430, 620, 668
RsaNI	GTAC	3 cut(s)	429, 619, 667
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	891
SatI	GCNGC	3 cut(s)	141, 524, 1001
Sau3AI	GATC	5 cut(s)	367, 453, 604, 813, 991
Sau96I	GGNCC	2 cut(s)	593, 856
SchI	GAGTC	4 cut(s)	182, 387, 397, 449
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	2 cut(s)	524, 680
SspMI	CTAG	3 cut(s)	183, 359, 1009
StuI	AGGCCT	1 cut(s)	557
StyI	CCWWGG	2 cut(s)	118, 596
TaaI	ACNGT	2 cut(s)	272, 449
TaqI	TCGA	3 cut(s)	147, 265, 561
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	262, 976
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TseI	GCWGC	2 cut(s)	140, 1000
TspDTI	ATGAA	3 cut(s)	42, 815, 854
TspGWI	ACGGA	1 cut(s)	282
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	3 cut(s)	183, 359, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.