Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Reverse (-)

48407581 .. 48408021

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTGAAAATCAGCCGGCTGGTGATGGAGAAACAGACCTCAGTAATGAGTGTAAGGAACTCCTTTCTCTCCCCAAAGAAGGAGGCTGGATATCCCTTCACCAACATCAATACCAAGGCTTTTGGTGCCCAACAGAAATATTCCAAGGCATAATCGCTTTCCAAAAGCACTTCCAAGCTAGGGACTCCGATATAGTTGTGGCCTGCGTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGATTTTTGCTATTGTGAATCAACAACGTTTCAAAATAAAGATCCATCCCTTGCTCACTTCCAACTCTCATAATCTTGTCCCCTTCTTAGAGGTGGATCTCTATATAAACAACCTAGTTCCTGATTTCTCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCTTTCCTTCTTTGGGTACAATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

6.03

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	62 - 139	6.6e-14	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 221
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	2 cut(s)	277, 345
AfaI	GTAC	2 cut(s)	210, 429
AfiI	CCNNNNNNNGG	4 cut(s)	80, 181, 218, 424
AgsI	TTSAA	2 cut(s)	235, 274
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AlwI	GGATC	2 cut(s)	277, 345
AoxI	GGCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	35, 92
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	126, 221
BccI	CCATC	2 cut(s)	20, 294
BfaI	CTAG	2 cut(s)	180, 356
BmiI	GGNNCC	2 cut(s)	128, 223
Bpu10I	CCTNAGC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 181, 218, 424
Bse118I	RCCGGY	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	115, 145
BseGI	GGATG	2 cut(s)	286, 371
BseLI	CCNNNNNNNGG	4 cut(s)	80, 181, 218, 424
BseMII	CTCAG	2 cut(s)	55, 375
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	2 cut(s)	126, 221
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	2 cut(s)	197, 305
BslI	CCNNNNNNNGG	4 cut(s)	80, 181, 218, 424
BsmFI	GGGAC	2 cut(s)	197, 305
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	282, 337
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	54, 376
BspLI	GGNNCC	2 cut(s)	128, 223
BspPI	GGATC	2 cut(s)	277, 345
BspT107I	GGYRCC	2 cut(s)	126, 221
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	115, 145
BssMI	GATC	2 cut(s)	282, 337
BssT1I	CCWWGG	2 cut(s)	115, 145
BstC8I	GCNNGC	2 cut(s)	18, 205
BstDEI	CTNAG	3 cut(s)	41, 328, 384
BstF5I	GGATG	2 cut(s)	286, 371
BstKTI	GATC	2 cut(s)	285, 340
BstMBI	GATC	2 cut(s)	282, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	282, 337
BstYI	RGATCY	2 cut(s)	282, 337
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	286, 371
Cac8I	GCNNGC	2 cut(s)	18, 205
Cfr10I	RCCGGY	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	209, 428
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	8 cut(s)	16, 20, 87, 120, 179, 203, 239, 388
CviKI_1	RGCY	8 cut(s)	16, 20, 87, 120, 179, 203, 239, 388
CviQI	GTAC	2 cut(s)	209, 428
DdeI	CTNAG	3 cut(s)	41, 328, 384
DpnI	GATC	2 cut(s)	284, 339
DpnII	GATC	2 cut(s)	282, 337
Eco130I	CCWWGG	2 cut(s)	115, 145
Eco32I	GATATC	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	115, 145
ErhI	CCWWGG	2 cut(s)	115, 145
FaeI	CATG	1 cut(s)	231
FaiI	YATR	7 cut(s)	152, 194, 229, 312, 345, 347, 408
FaqI	GGGAC	2 cut(s)	197, 305
FatI	CATG	1 cut(s)	227
FokI	GGATG	2 cut(s)	273, 358
FspBI	CTAG	2 cut(s)	180, 356
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	17, 219
Hin1II	CATG	1 cut(s)	231
HinfI	GANTC	3 cut(s)	185, 259, 393
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	2 cut(s)	35, 92
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	362, 383
HpyAV	CCTTC	4 cut(s)	74, 107, 334, 428
HpyCH4IV	ACGT	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	41, 328, 384
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	282, 337
LpnPI	CCDG	7 cut(s)	6, 30, 73, 217, 232, 375, 396
MaeI	CTAG	2 cut(s)	180, 356
MaeII	ACGT	1 cut(s)	268
MalI	GATC	2 cut(s)	284, 339
MboI	GATC	2 cut(s)	282, 337
MflI	RGATCY	2 cut(s)	282, 337
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	431, 436
MlyI	GAGTC	2 cut(s)	179, 387
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	50, 77, 325
MroNI	GCCGGC	1 cut(s)	16
MseI	TTAA	2 cut(s)	434, 439
MspI	CCGG	2 cut(s)	17, 219
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	2 cut(s)	282, 337
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	2 cut(s)	128, 223
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	179, 387
PpsI	GAGTC	2 cut(s)	179, 387
Psp1406I	AACGTT	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	128, 223
PsuI	RGATCY	2 cut(s)	282, 337
RsaI	GTAC	2 cut(s)	210, 429
RsaNI	GTAC	2 cut(s)	209, 428
SaqAI	TTAA	2 cut(s)	434, 439
Sau3AI	GATC	2 cut(s)	282, 337
SchI	GAGTC	2 cut(s)	179, 387
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	42, 181, 271, 336, 357
Sse9I	AATT	2 cut(s)	431, 436
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	180, 356
StyI	CCWWGG	2 cut(s)	115, 145
TaiI	ACGT	1 cut(s)	271
TasI	AATT	2 cut(s)	431, 436
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	434, 439
Tru9I	TTAA	2 cut(s)	434, 439
XspI	CTAG	2 cut(s)	180, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.