Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000919

Physical Location & Seq

Genomic Coordinates Forward (+)

12065027 .. 12066600

Gene Structure 1574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13441.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCCTGAATTTCAGCCCGCTGATCATGAAGCAGAAAACCTCAGTAATGAGTGCCAGGAACTCCTTCTTTCTCTCCCCAAAGAAAGAGGCTGGGTAGCCCTTCCCCAATATCTATACCAAGGCTTCTGGTGCCCAACACCAGAAGTACTCCAAGCCATTATCGCTTTCCAAAAACACTTCCAAGCTAGGGACTCCGACATAGTTGTGGCCAGCTTACCCAAATGCGGCACCACATGGTTGAAAGCCTTAACTTTTGCTGTTGTGAATCGACACCGTTTCGCTATAGAGACCCATCCCTTGCTCACATCCAACTCTCATAAGCTTGTACCATACTTCACAATGGATCTCTATATAAACAACCGAGTTCCTGATTTCTCATCCAAGTACTTTCCTGAGCCTAGGCTCTTTGGGACTCATCTTCCTTATCCTTCTTTGGGTTCAGTCAAAGAGTCCAATTGTAAGATCATTTATACTTGTAGAAACCCATTCGACTCATTTGTTTCTACTTGGCATTTCATTAACAAAGCCAGGCCACAATCTTTAGGGCCATTGTCCCTTGATGAGGCATTTGATAGGTATTGCCAAGGCATGGATGGATGGGGTCCATTTTGGGATCACATTTTGGGTTACTGGAAAGAGAGTTTGAAGAGACCTAACAATGTGTTGTTCTTGAAGTACGAGGACATGAAGAAAGATGTTGTATCTCACTTGAAAAAATTGGCCGAGTTTATAGACTGCCCTTTCAGCGAGGAGGAGGAGAGAAACGGTGTCATTGAAGCCATCGCAAAGCTATGTTCTTTTGACACCATGAAAAAGTTGGAGATCAACAAAACTGGAAAGTTGGTCATGGATATGGAGAACAGGAGCTTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTGTTTCACCCCTGAGATGGAGGAGAGAATGTCCAAAGTCATAGAAGAAAAGTTTGGTGGTTCAGGCTTGACTTTAGAAGGGATCCCCGAGCTAATAGATCCTGTCAAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008146 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009814 GO:0009861 GO:0009987 GO:0010033 GO:0010817 GO:0016143 GO:0016144 GO:0016740 GO:0016782 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032260 GO:0032787 GO:0042221 GO:0042445 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0045087 GO:0047364 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080131 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

340

Amino Acids

39.13

Weight (kDa)

5.79

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	64 - 323	7.8e-66	Sulfotransferase domain
Sulfotransfer_3	PF13469	152 - 250	1e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07000 AT5G07010
fragaria_vesca	FvH4_1g19370 FvH4_2g35250 FvH4_7g03900 FvH4_7g13440 FvH4_7g13441 FvH4_7g13451
malus_domestica	MD00G1152400.v1.1
prunus_persica	Prupe.2G043800_v2.0.a1
pyrus_communis	pycom02g23670
rosa_chinensis	RchiOBHm_Chr1g0327381 RchiOBHm_Chr1g0327411 RchiOBHm_Chr1g0327441 RchiOBHm_Chr1g0352791 RchiOBHm_Chr1g0353081 RchiOBHm_Chr2g0131991 RchiOBHm_Chr2g0132001
rosa_laevigata	RLG00000019222 RLG00000028292 RLG00000029994 RLG00000029995
rosa_multiflora	Rmu_co8009524.1_g000001 Rmu_sc0000584.1_g000024 Rmu_sc0001207.1_g000090 Rmu_sc0003600.1_g000014 Rmu_sc0003600.1_g000021 Rmu_sc0006445.1_g000009 Rmu_sc0008840.1_g000008 Rmu_sc0011915.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302090 Rroxscaffold_4G00302300 Rroxscaffold_4G00302320 Rroxscaffold_4G00302340 Rroxscaffold_4G00302350 Rroxscaffold_4G00322710
rosa_rugosa	Rorug01G0066900 Rorug01G0067100 Rorug01G0233600 Rorug02G0301800.1
rosa_samantha	Rh1AG083700 Rh1AG083800 Rh1AG246900 Rh1BG066600 Rh1BG066800 Rh1BG217000 Rh1CG081700 Rh1CG230600 Rh1DG088000 Rh1DG088300 Rh1DG243100 Rh2AG353100 Rh2AG353200 Rh2BG360700 Rh2BG360800 Rh2CG338400 Rh2DG377500
rosa_wichuraiana	Rw0G018120 Rw1G006570 Rw1G006590 Rw1G020810 Rw1G021360 Rw1G021490 Rw2G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	129, 227
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	2 cut(s)	18, 225
AclWI	GGATC	5 cut(s)	351, 621, 979, 992, 995
AcoI	YGGCCR	2 cut(s)	207, 720
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	4 cut(s)	147, 327, 386, 677
AfiI	CCNNNNNNNGG	6 cut(s)	187, 224, 434, 562, 589, 919
AgsI	TTSAA	5 cut(s)	241, 646, 673, 712, 776
AjnI	CCWGG	2 cut(s)	54, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	939, 971
AluBI	AGCT	7 cut(s)	185, 213, 322, 790, 867, 881, 994
AluI	AGCT	7 cut(s)	185, 213, 322, 790, 867, 881, 994
Alw26I	GTCTC	2 cut(s)	281, 643
AlwI	GGATC	5 cut(s)	351, 621, 979, 992, 995
Ama87I	CYCGRG	1 cut(s)	989
AoxI	GGCC	4 cut(s)	207, 530, 545, 720
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	545, 602
AsuHPI	GGTGA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	602
AvrII	CCTAGG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	984
BanI	GGYRCC	2 cut(s)	129, 227
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	5 cut(s)	300, 587, 591, 788, 913
BciT130I	CCWGG	2 cut(s)	56, 529
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	281, 643
BfaI	CTAG	3 cut(s)	186, 399, 1018
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	226
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	227
BmcAI	AGTACT	2 cut(s)	147, 386
Bme1390I	CCNGG	2 cut(s)	56, 529
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	2 cut(s)	545, 602
BmiI	GGNNCC	4 cut(s)	131, 229, 603, 986
BmrFI	CCNGG	2 cut(s)	56, 529
Bpu10I	CCTNAGC	2 cut(s)	393, 882
BsaI	GGTCTC	2 cut(s)	281, 643
BsaJI	CCNNGG	3 cut(s)	118, 398, 583
BsaXI	ACNNNNNCTCC	4 cut(s)	882, 912, 917, 947
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 224, 434, 562, 589, 919
Bse1I	ACTGG	2 cut(s)	635, 838
BseBI	CCWGG	2 cut(s)	56, 529
BseDI	CCNNGG	3 cut(s)	118, 398, 583
BseGI	GGATG	5 cut(s)	292, 305, 377, 598, 602
BseLI	CCNNNNNNNGG	6 cut(s)	187, 224, 434, 562, 589, 919
BseMII	CTCAG	4 cut(s)	55, 384, 873, 906
BseNI	ACTGG	2 cut(s)	635, 838
BseRI	GAGGAG	4 cut(s)	764, 767, 770, 938
BseSI	GKGCMC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	90
BshFI	GGCC	4 cut(s)	209, 532, 547, 722
BshNI	GGYRCC	2 cut(s)	129, 227
BsiHKCI	CYCGRG	1 cut(s)	989
BslFI	GGGAC	3 cut(s)	203, 424, 538
BslI	CCNNNNNNNGG	6 cut(s)	187, 224, 434, 562, 589, 919
BsmAI	GTCTC	2 cut(s)	281, 643
BsmFI	GGGAC	3 cut(s)	203, 424, 538
BsnI	GGCC	4 cut(s)	209, 532, 547, 722
Bso31I	GGTCTC	2 cut(s)	281, 643
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
BspACI	CCGC	2 cut(s)	18, 225
BspANI	GGCC	4 cut(s)	209, 532, 547, 722
BspCNI	CTCAG	4 cut(s)	54, 385, 874, 907
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	4 cut(s)	131, 229, 603, 986
BspPI	GGATC	5 cut(s)	351, 621, 979, 992, 995
BspT107I	GGYRCC	2 cut(s)	129, 227
BspTNI	GGTCTC	2 cut(s)	281, 643
BsrI	ACTGG	2 cut(s)	635, 838
BssECI	CCNNGG	3 cut(s)	118, 398, 583
BssMI	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
BssT1I	CCWWGG	3 cut(s)	118, 398, 583
Bst2UI	CCWGG	2 cut(s)	56, 529
Bst4CI	ACNGT	3 cut(s)	275, 767, 905
Bst6I	CTCTTC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	18, 211
BstDEI	CTNAG	4 cut(s)	41, 393, 882, 915
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	5 cut(s)	292, 305, 377, 598, 602
BstKTI	GATC	7 cut(s)	25, 346, 465, 616, 825, 987, 1003
BstMAI	GTCTC	2 cut(s)	281, 643
BstMBI	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 161, 744
BstNI	CCWGG	2 cut(s)	56, 529
BstSCI	CCNGG	2 cut(s)	54, 527
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	343, 984, 1000
BstYI	RGATCY	3 cut(s)	343, 984, 1000
BsuRI	GGCC	4 cut(s)	209, 532, 547, 722
BtgZI	GCGATG	1 cut(s)	766
BtsCI	GGATG	5 cut(s)	292, 305, 377, 598, 602
Cac8I	GCNNGC	2 cut(s)	18, 211
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	545, 602
Csp6I	GTAC	4 cut(s)	146, 326, 385, 676
CviAII	CATG	6 cut(s)	26, 234, 589, 685, 808, 847
CviQI	GTAC	4 cut(s)	146, 326, 385, 676
DdeI	CTNAG	4 cut(s)	41, 393, 882, 915
DpnI	GATC	7 cut(s)	24, 345, 464, 615, 824, 986, 1002
DpnII	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
EaeI	YGGCCR	2 cut(s)	207, 720
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	3 cut(s)	118, 398, 583
Eco31I	GGTCTC	2 cut(s)	281, 643
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	989
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	54, 527
EcoT14I	CCWWGG	3 cut(s)	118, 398, 583
ErhI	CCWWGG	3 cut(s)	118, 398, 583
FaeI	CATG	6 cut(s)	29, 237, 592, 688, 811, 850
FaqI	GGGAC	3 cut(s)	203, 424, 538
FatI	CATG	6 cut(s)	25, 233, 588, 684, 807, 846
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	5 cut(s)	279, 292, 364, 605, 609
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	3 cut(s)	186, 399, 1018
GluI	GCNGC	1 cut(s)	226
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	209, 532, 547, 722
Hin1II	CATG	6 cut(s)	29, 237, 592, 688, 811, 850
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	5 cut(s)	191, 265, 412, 449, 491
HpaI	GTTAAC	1 cut(s)	901
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	2 cut(s)	196, 875
Hpy188III	TCNNGA	4 cut(s)	26, 368, 392, 670
Hpy8I	GTNNAC	1 cut(s)	901
HpyAV	CCTTC	4 cut(s)	74, 110, 438, 974
HpyCH4III	ACNGT	3 cut(s)	275, 767, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 161, 744
HpyF3I	CTNAG	4 cut(s)	41, 393, 882, 915
Hsp92II	CATG	6 cut(s)	29, 237, 592, 688, 811, 850
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	901
Kzo9I	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
LmnI	GCTCC	1 cut(s)	864
MaeI	CTAG	3 cut(s)	186, 399, 1018
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	7 cut(s)	24, 345, 464, 615, 824, 986, 1002
MboI	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
MboII	GAAGA	4 cut(s)	410, 658, 700, 959
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	3 cut(s)	343, 984, 1000
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	3 cut(s)	8, 454, 716
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	4 cut(s)	185, 406, 458, 485
MmeI	TCCRAC	3 cut(s)	219, 333, 798
MnlI	CCTC	9 cut(s)	50, 80, 556, 673, 742, 745, 748, 877, 916
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	3 cut(s)	248, 519, 900
MslI	CAYNNNNRTG	2 cut(s)	203, 851
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	56, 529
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	56, 529
MwoI	GCNNNNNNNGC	3 cut(s)	129, 161, 744
NdeII	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
NlaIII	CATG	6 cut(s)	29, 237, 592, 688, 811, 850
NlaIV	GGNNCC	4 cut(s)	131, 229, 603, 986
NmeAIII	GCCGAG	1 cut(s)	748
PagI	TCATGA	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	4 cut(s)	185, 406, 457, 485
PpsI	GAGTC	4 cut(s)	185, 406, 457, 485
Psp6I	CCWGG	2 cut(s)	54, 527
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	54, 527
PspN4I	GGNNCC	4 cut(s)	131, 229, 603, 986
PspPI	GGNCC	2 cut(s)	545, 602
PsuI	RGATCY	3 cut(s)	343, 984, 1000
RsaI	GTAC	4 cut(s)	147, 327, 386, 677
RsaNI	GTAC	4 cut(s)	146, 326, 385, 676
RseI	CAYNNNNRTG	2 cut(s)	203, 851
SaqAI	TTAA	3 cut(s)	248, 519, 900
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	7 cut(s)	22, 343, 462, 613, 822, 984, 1000
Sau96I	GGNCC	2 cut(s)	545, 602
ScaI	AGTACT	2 cut(s)	147, 386
SchI	GAGTC	4 cut(s)	185, 406, 458, 485
ScrFI	CCNGG	2 cut(s)	56, 529
SduI	GDGCHC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	203, 851
Sse9I	AATT	3 cut(s)	8, 454, 716
SsiI	CCGC	2 cut(s)	18, 225
SspMI	CTAG	3 cut(s)	186, 399, 1018
StyD4I	CCNGG	2 cut(s)	54, 527
StyI	CCWWGG	3 cut(s)	118, 398, 583
TaaI	ACNGT	3 cut(s)	275, 767, 905
TaqI	TCGA	2 cut(s)	268, 489
TasI	AATT	3 cut(s)	8, 454, 716
TatI	WGTACW	2 cut(s)	145, 384
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	3 cut(s)	248, 519, 900
Tru9I	TTAA	3 cut(s)	248, 519, 900
TspDTI	ATGAA	4 cut(s)	42, 505, 701, 824
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	2 cut(s)	590, 814
XmaJI	CCTAGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	3 cut(s)	186, 399, 1018
ZrmI	AGTACT	2 cut(s)	147, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.