Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0021109

Physical Location & Seq

Genomic Coordinates Reverse (-)

13914534 .. 13917835

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16171.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTACGGTATGGAGTTATGGTCTATCATGCTTGAAAATTCGAGAACCTCTCTATTAATGGTGGTAAAATTCCAGGTTTTATTAAAACGTTCAGTACTTCTGCTGTACCTCCTAACTGTCCAAGTGCAAGACCAAAGGTGGCCAGCTGGCATGGAGATTTTCTATAGGACCTTGACTGGCAACACCATAAGCCTTGAGGTGGAGAGCTCTGATACTATACTGGATGTAAAAGCCAGGATGCATGATGAGATCCGGCTTGATGACAAAGCGCAGATTCAGGACCAGAAATTGCTTATGTTGTACGGACGACAGCACGACGATGGACTGACTGTGGCAGATTATGATATCTTTGAGGGATCTACTTTACTTCTTGTTTTCGGAATGCAGATTGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005700 GO:0005704 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0098687 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03320 ko04137 ko04144 ko05012 ko05167 map03320 map04137 map04144 map05012 map05167

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

133

Amino Acids

15.27

Weight (kDa)

4.76

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	54 - 126	1.7e-10	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g16171
rosa_chinensis	RchiOBHm_Chr1g0359161
rosa_samantha	Rh1AG281800 Rh1CG266200 Rh1DG277300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	2 cut(s)	244, 364
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	37, 68
AfaI	GTAC	4 cut(s)	5, 96, 107, 302
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	72, 233
AluBI	AGCT	2 cut(s)	146, 207
AluI	AGCT	2 cut(s)	146, 207
Alw21I	GWGCWC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	244, 364
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	37, 68
AseI	ATTAAT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	168, 280
AvaII	GGWCC	2 cut(s)	168, 280
BalI	TGGCCA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	209
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	2 cut(s)	74, 235
BfmI	CTRYAG	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	74, 235
Bme18I	GGWCC	2 cut(s)	168, 280
BmgT120I	GGNCC	2 cut(s)	168, 280
BmrFI	CCNGG	2 cut(s)	74, 235
BmsI	GCATC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuEI	CTTGAG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	181, 225
BseBI	CCWGG	2 cut(s)	74, 235
BseGI	GGATG	2 cut(s)	229, 243
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	181, 225
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	249, 356
BspANI	GGCC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	244, 364
BsrI	ACTGG	2 cut(s)	181, 225
BssMI	GATC	2 cut(s)	249, 356
Bst2UI	CCWGG	2 cut(s)	74, 235
Bst4CI	ACNGT	3 cut(s)	8, 118, 331
BstC8I	GCNNGC	2 cut(s)	144, 148
BstF5I	GGATG	2 cut(s)	229, 243
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	252, 359
BstMBI	GATC	2 cut(s)	249, 356
BstNI	CCWGG	2 cut(s)	74, 235
BstSCI	CCNGG	2 cut(s)	72, 233
BstSFI	CTRYAG	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	249, 356
BstYI	RGATCY	2 cut(s)	249, 356
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	229, 243
Cac8I	GCNNGC	2 cut(s)	144, 148
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	168, 280
Csp6I	GTAC	4 cut(s)	4, 95, 106, 301
CviAII	CATG	3 cut(s)	28, 151, 242
CviJI	RGCY	6 cut(s)	142, 146, 192, 207, 233, 256
CviKI_1	RGCY	6 cut(s)	142, 146, 192, 207, 233, 256
CviQI	GTAC	4 cut(s)	4, 95, 106, 301
DpnI	GATC	2 cut(s)	251, 358
DpnII	GATC	2 cut(s)	249, 356
EaeI	YGGCCR	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	168, 280
Eco53kI	GAGCTC	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	72, 233
EcoRV	GATATC	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	209
FaeI	CATG	3 cut(s)	31, 154, 245
FatI	CATG	3 cut(s)	27, 150, 241
FokI	GGATG	2 cut(s)	236, 250
FriOI	GRGCYC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	31, 154, 245
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	211, 380
Hpy188III	TCNNGA	2 cut(s)	42, 278
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	8, 118, 331
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	127, 241, 385
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	31, 154, 245
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	249, 356
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	88
MalI	GATC	2 cut(s)	251, 358
MboI	GATC	2 cut(s)	249, 356
MflI	RGATCY	2 cut(s)	249, 356
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	3 cut(s)	37, 68, 287
MluNI	TGGCCA	1 cut(s)	142
MnlI	CCTC	4 cut(s)	58, 119, 190, 346
Mox20I	TGGCCA	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	2 cut(s)	56, 83
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	74, 235
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	74, 235
NdeII	GATC	2 cut(s)	249, 356
NlaIII	CATG	3 cut(s)	31, 154, 245
NsiI	ATGCAT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	72, 233
PspGI	CCWGG	2 cut(s)	72, 233
PspPI	GGNCC	2 cut(s)	168, 280
PspPPI	RGGWCCY	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	249, 356
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	4 cut(s)	5, 96, 107, 302
RsaNI	GTAC	4 cut(s)	4, 95, 106, 301
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	56, 83
Sau3AI	GATC	2 cut(s)	249, 356
Sau96I	GGNCC	2 cut(s)	168, 280
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	74, 235
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	9 cut(s)	50, 78, 91, 111, 140, 148, 173, 201, 209
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	168, 280
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	37, 68, 287
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	72, 233
TaaI	ACNGT	3 cut(s)	8, 118, 331
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	37, 68, 287
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	56, 83
Tru9I	TTAA	2 cut(s)	56, 83
TspGWI	ACGGA	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	168, 280
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	2 cut(s)	37, 68
ZrmI	AGTACT	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.