Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0021109

Physical Location & Seq

Genomic Coordinates Reverse (-)

51127051 .. 51127290

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGATTTTCGTGAAGACCCCGTCCGACAAGACCATAACTCTAGAGGTAGAGAAGATTGATACGATAGGGGATGTAAAGGCAACGGTTCAAGACCAGAAACTGCTCATGTTGTTTGATAAACAGCTTGACGATGACATGACTTTGGCAGACTGTAATATCTGGGAGAACTGTACTTTACGTCTGGTCTTCGGAATGCAGATCTTTGTCGAAATCCTGAATGGGAGGACAATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

4.34

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 64	2.3e-10	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g16171
rosa_chinensis	RchiOBHm_Chr1g0359161
rosa_samantha	Rh1AG281800 Rh1CG266200 Rh1DG277300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	23, 181
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	201
BpiI	GAAGAC	2 cut(s)	23, 181
BseGI	GGATG	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	201
BssMI	GATC	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	88, 155, 173
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	23, 181
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	109, 139, 235
CviJI	RGCY	1 cut(s)	127
CviKI_1	RGCY	1 cut(s)	127
CviQI	GTAC	1 cut(s)	174
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
FaeI	CATG	3 cut(s)	112, 142, 238
FaiI	YATR	4 cut(s)	38, 110, 140, 236
FatI	CATG	3 cut(s)	108, 138, 234
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	1 cut(s)	44
Hin1II	CATG	3 cut(s)	112, 142, 238
Hpy188I	TCNGA	2 cut(s)	28, 194
Hpy188III	TCNNGA	4 cut(s)	13, 44, 92, 217
HpyCH4III	ACNGT	3 cut(s)	88, 155, 173
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	112, 142, 238
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	4 cut(s)	110, 148, 170, 230
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	181
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	28, 67, 181
MflI	RGATCY	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	40, 219
Mva1269I	GAATGC	1 cut(s)	201
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	112, 142, 238
PctI	GAATGC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	201
SetI	ASST	3 cut(s)	51, 129, 184
SspMI	CTAG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	88, 155, 173
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.