FvH4_7g17360

P21-Rho-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014369
Physical Location & Seq
Forward (+)
14775213 .. 14779657
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17360.t1

Sequence Viewer

Length: 1434 bp
ATGGCTCGCTTGTTCCGATCCAAATCTTGCGGACTCATCGAGCTCAACGTTGCTCCTCCCAACCATGAAGACGAAGAAACAGAGAGAGAAGAAGAAGAAGACGATGATGATGAAAAGGGTTACGAATTTGATGAATATGAAGAAGAGTCGTGTAAAGTGTCGACCCCATTTCTGAGTCCGATGAGGAGAGCCAGTAGGGCTCATAAAGGTCGAGACTTTAATACAGGGCAGACCAACAACAACCAGTTTGCGATTGTGGATATTCTGGTGGCGGCTCTGAGGAAGTCTCTGATCACTTGCAGTGTGGAGAGGGATGACGTGGCGTCCTCCATTGATATTAGCTCACCTACGGAGGTGAGGCATGTATCACATGTGACGTTTGATAGGTTCAATGGGTTTCTGGGTTTGCCTACTGAGCTTGAGCCTGAGGTTCCCAGAAAGGCACCTAGTGCTAGTGCTAGTGTGTTTGGGGTCTCTGCTAAGTCAATGCAGTGTTCTTATGATGACAAAGGAAACAGTGTGCCAACAATACTTCTTATGATGCAAAAGCGATTATATTCAGGAGGAGGCCTTAAAGCAGAAGGAATATTCAGAATAAATGCTGAAAATACTCAAGAAGAGCTTCTTCGGAACCAATTAAATAGTGGTGTAGTGCCTGATGGCATTGATGTTCATTGCTTGGCAGGTTTAATAAAGGCATGGTTTAGAGAGCTTCCAACACGGGTACTTGATTCTCTTACACCAGAACAGGTGATGCGCTGCAACACAGAGGATGACTGCACAAGACTTGTGAATTCACTTCCTGCAACGGAGGCGTCACTACTCGATTGGGCTCTCAATTTGATGGCAGATGTTGCGCAGAATGAACAATATAATAAAATGAATGCACGCAACATTGCTATGGTTTTTGCTCCTAACATGACAGAGATGGCTGATCCTTTAACAGCACTACTACATGCGGTGCAAGTTATGAATTTCCTCAAGACACTAATCTTAAAGATCCTACATGAAAGAGAGGAATCAACTGCCGCTGAGGCTACACAGAGCTCATCGTGCTCAAAATCTCTCAACTACAATAATGATCTTTCTTGTTCAATTATGGGACATGTTCAGGACAACTCATTCAGGACCACCACTATGGACAGCCCTGAGGCCTGCATTGATGAGAAACTCTGGTGCTCTCCTGCAATGAGTGACGAGGAAGAGGAAATCGAATCTGATTCCAATAGTAGCCCATGTAGCAAGCATGAACTTGAGTGTTCGGAAACTGTTTGTAGATCAGGTGGATATGAAGCTGGAGACTGGTTGAGTTTGAGGAAAGGAGTGCGGAAGCTGTGCAACCACCCGGTGTTTCAGTTGAGTAAGCCGGCTAAGAAGACTGCAAGTGTTGGGATTGTAAATGCTAGGGGAGGAGGTGGAGAAGCTTGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

478

Amino Acids

52.77

Weight (kDa)

4.83

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 175 - 309 8.9e-23 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46710
fragaria_vesca FvH4_7g17360
malus_domestica MD01G1086700.v1.1 MD07G1156800.v1.1
prunus_persica Prupe.2G195100_v2.0.a1
pyrus_communis pycom01g11060 pycom07g15340
rosa_chinensis RchiOBHm_Chr1g0360801
rosa_laevigata RLG00000027785
rosa_multiflora Rmu_ssc0000022.1_g000034
rosa_roxburghii Rroxscaffold_4G00295800
rosa_rugosa Rorug01G0281600
rosa_samantha Rh1AG293600 Rh1BG258200 Rh1CG276100 Rh1DG288500
rosa_wichuraiana Rw1G025980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 858
Acc36I ACCTGC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 161
AciI CCGC 5 cut(s) 30, 272, 959, 1029, 1327
AclI AACGTT 1 cut(s) 48
AclWI GGATC 3 cut(s) 12, 929, 994
AcsI RAATTY 3 cut(s) 125, 793, 973
AcyI GRCGYC 2 cut(s) 323, 815
AdeI CACNNNGTG 2 cut(s) 449, 1348
AfaI GTAC 1 cut(s) 726
AflIII ACRYGT 2 cut(s) 370, 1105
AgsI TTSAA 2 cut(s) 391, 1095
AhdI GACNNNNNGTC 1 cut(s) 322
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 9 cut(s) 43, 342, 418, 622, 712, 1047, 1295, 1333, 1424
AluI AGCT 9 cut(s) 43, 342, 418, 622, 712, 1047, 1295, 1333, 1424
Alw21I GWGCWC 4 cut(s) 45, 1049, 1058, 1181
Alw26I GTCTC 4 cut(s) 207, 291, 478, 1293
AlwI GGATC 3 cut(s) 12, 929, 994
AoxI GGCC 2 cut(s) 568, 1152
ApeKI GCWGC 1 cut(s) 759
ApoI RAATTY 3 cut(s) 125, 793, 973
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 2 cut(s) 759, 859
AspS9I GGNCC 1 cut(s) 1128
AsuC2I CCSGG 1 cut(s) 1346
AsuHPI GGTGA 3 cut(s) 336, 367, 763
AvaII GGWCC 1 cut(s) 1128
AxyI CCTNAGG 2 cut(s) 426, 1149
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 4 cut(s) 45, 202, 835, 1049
BbsI GAAGAC 3 cut(s) 75, 105, 1382
Bbv12I GWGCWC 4 cut(s) 45, 1049, 1058, 1181
BbvCI CCTCAGC 1 cut(s) 1032
BbvI GCAGC 1 cut(s) 746
BccI CCATC 3 cut(s) 653, 838, 922
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 1 cut(s) 1346
BcoDI GTCTC 4 cut(s) 207, 291, 478, 1293
BfaI CTAG 4 cut(s) 447, 453, 459, 1404
BfuAI ACCTGC 1 cut(s) 674
BglI GCCNNNNNGGC 2 cut(s) 197, 1034
BisI GCNGC 3 cut(s) 273, 760, 1029
BlsI GCNGC 3 cut(s) 274, 761, 1030
Bme1390I CCNGG 1 cut(s) 1346
Bme18I GGWCC 1 cut(s) 1128
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 3 cut(s) 432, 444, 632
BmrFI CCNGG 1 cut(s) 1346
BmsI GCATC 2 cut(s) 531, 744
BpiI GAAGAC 3 cut(s) 75, 105, 1382
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 1 cut(s) 1317
Bpu10I CCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 4 cut(s) 440, 597, 965, 1274
BpuMI CCSGG 1 cut(s) 1346
BsaBI GATNNNNATC 1 cut(s) 22
BsaHI GRCGYC 2 cut(s) 323, 815
BsaI GGTCTC 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bse118I RCCGGY 1 cut(s) 1366
Bse1I ACTGG 3 cut(s) 192, 244, 1307
Bse21I CCTNAGG 2 cut(s) 426, 1149
Bse3DI GCAATG 3 cut(s) 673, 894, 1194
Bse8I GATNNNNATC 1 cut(s) 22
BseGI GGATG 2 cut(s) 319, 778
BseJI GATNNNNATC 1 cut(s) 22
BseMI GCAATG 3 cut(s) 673, 894, 1194
BseMII CTCAG 6 cut(s) 164, 269, 405, 417, 1023, 1140
BseNI ACTGG 3 cut(s) 192, 244, 1307
BseRI GAGGAG 4 cut(s) 45, 199, 579, 1425
BseXI GCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 763
BshFI GGCC 2 cut(s) 570, 1154
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 4 cut(s) 45, 1049, 1058, 1181
BsiSI CCGG 2 cut(s) 1346, 1367
BslFI GGGAC 1 cut(s) 1116
BsmAI GTCTC 4 cut(s) 207, 291, 478, 1293
BsmFI GGGAC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 2 cut(s) 570, 1154
Bso31I GGTCTC 1 cut(s) 478
Bsp1286I GDGCHC 6 cut(s) 45, 202, 835, 1049, 1058, 1181
Bsp143I GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
BspACI CCGC 5 cut(s) 30, 272, 959, 1029, 1327
BspANI GGCC 2 cut(s) 570, 1154
BspCNI CTCAG 6 cut(s) 165, 270, 406, 418, 1024, 1141
BspLI GGNNCC 3 cut(s) 432, 444, 632
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 3 cut(s) 12, 929, 994
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 673, 894, 1194
BsrFI RCCGGY 1 cut(s) 1366
BsrI ACTGG 3 cut(s) 192, 244, 1307
BssAI RCCGGY 1 cut(s) 1366
BssMI GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
BssNI GRCGYC 2 cut(s) 323, 815
Bst4CI ACNGT 2 cut(s) 518, 1270
Bst6I CTCTTC 3 cut(s) 138, 612, 1197
BstACI GRCGYC 2 cut(s) 323, 815
BstAPI GCANNNNNTGC 2 cut(s) 449, 854
BstC8I GCNNGC 5 cut(s) 7, 889, 1156, 1244, 1368
BstDEI CTNAG 8 cut(s) 173, 278, 414, 426, 480, 1032, 1149, 1371
BstF5I GGATG 2 cut(s) 319, 778
BstHHI GCGC 2 cut(s) 759, 859
BstKTI GATC 6 cut(s) 20, 294, 937, 1002, 1084, 1280
BstMAI GTCTC 4 cut(s) 207, 291, 478, 1293
BstMBI GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
BstMWI GCNNNNNNNGC 8 cut(s) 197, 415, 449, 812, 854, 1034, 1053, 1239
BstNSI RCATGY 4 cut(s) 365, 374, 959, 1109
BstSCI CCNGG 1 cut(s) 1344
BstV1I GCAGC 1 cut(s) 746
BstV2I GAAGAC 3 cut(s) 75, 105, 1382
BstX2I RGATCY 1 cut(s) 999
BstXI CCANNNNNNTGG 1 cut(s) 1138
BstYI RGATCY 1 cut(s) 999
Bsu36I CCTNAGG 2 cut(s) 426, 1149
BsuRI GGCC 2 cut(s) 570, 1154
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 319, 778
BtsI GCAGTG 2 cut(s) 307, 497
BtsIMutI CAGTG 3 cut(s) 307, 497, 523
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 5 cut(s) 7, 889, 1156, 1244, 1368
CfoI GCGC 2 cut(s) 759, 859
Cfr10I RCCGGY 1 cut(s) 1366
Cfr13I GGNCC 1 cut(s) 1128
CseI GACGC 2 cut(s) 312, 804
Csp6I GTAC 1 cut(s) 725
CviQI GTAC 1 cut(s) 725
DdeI CTNAG 8 cut(s) 173, 278, 414, 426, 480, 1032, 1149, 1371
DpnI GATC 6 cut(s) 19, 293, 936, 1001, 1083, 1279
DpnII GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
DraIII CACNNNGTG 2 cut(s) 449, 1348
DriI GACNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 138, 612, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 322
EarI CTCTTC 3 cut(s) 138, 612, 1197
Ecl136II GAGCTC 2 cut(s) 43, 1047
Eco147I AGGCCT 2 cut(s) 570, 1154
Eco24I GRGCYC 4 cut(s) 45, 202, 835, 1049
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 1128
Eco53kI GAGCTC 2 cut(s) 43, 1047
Eco81I CCTNAGG 2 cut(s) 426, 1149
EcoICRI GAGCTC 2 cut(s) 43, 1047
EcoRI GAATTC 1 cut(s) 793
EcoT38I GRGCYC 4 cut(s) 45, 202, 835, 1049
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 609, 641
FaqI GGGAC 1 cut(s) 1116
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 273, 760, 1029
FokI GGATG 2 cut(s) 326, 785
FriOI GRGCYC 4 cut(s) 45, 202, 835, 1049
Fsp4HI GCNGC 3 cut(s) 273, 760, 1029
FspBI CTAG 4 cut(s) 447, 453, 459, 1404
FspI TGCGCA 1 cut(s) 858
GlaI GCGC 2 cut(s) 758, 858
GluI GCNGC 3 cut(s) 273, 760, 1029
GsuI CTGGAG 1 cut(s) 1317
HaeIII GGCC 2 cut(s) 570, 1154
HapII CCGG 2 cut(s) 1346, 1367
HgaI GACGC 2 cut(s) 312, 804
HhaI GCGC 2 cut(s) 759, 859
Hin1I GRCGYC 2 cut(s) 323, 815
Hin6I GCGC 2 cut(s) 757, 857
HinP1I GCGC 2 cut(s) 757, 857
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 1422
HinfI GANTC 7 cut(s) 33, 146, 175, 731, 1019, 1214, 1220
HpaII CCGG 2 cut(s) 1346, 1367
HphI GGTGA 3 cut(s) 336, 367, 763
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 9 cut(s) 17, 174, 180, 279, 291, 593, 630, 1219, 1264
Hpy188III TCNNGA 6 cut(s) 212, 561, 614, 982, 1112, 1126
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 2 cut(s) 518, 1270
HpyCH4IV ACGT 3 cut(s) 48, 318, 377
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 415, 449, 812, 854, 1034, 1053, 1239
HpyF3I CTNAG 8 cut(s) 173, 278, 414, 426, 480, 1032, 1149, 1371
HpySE526I ACGT 3 cut(s) 48, 318, 377
Hsp92I GRCGYC 2 cut(s) 323, 815
HspAI GCGC 2 cut(s) 757, 857
KroI GCCGGC 1 cut(s) 1366
KroNI GCCGGC 1 cut(s) 1368
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 58, 916
Lsp1109I GCAGC 1 cut(s) 746
LweI GCATC 2 cut(s) 531, 744
MaeI CTAG 4 cut(s) 447, 453, 459, 1404
MaeII ACGT 3 cut(s) 48, 318, 377
MaeIII GTNAC 4 cut(s) 119, 373, 816, 1193
MalI GATC 6 cut(s) 19, 293, 936, 1001, 1083, 1279
MboI GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
MflI RGATCY 1 cut(s) 999
MhlI GDGCHC 6 cut(s) 45, 202, 835, 1049, 1058, 1181
MluCI AATT 6 cut(s) 125, 635, 793, 838, 973, 1095
MlyI GAGTC 3 cut(s) 27, 155, 184
MmeI TCCRAC 1 cut(s) 740
MroNI GCCGGC 1 cut(s) 1366
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 6 cut(s) 219, 573, 638, 689, 941, 995
MslI CAYNNNNRTG 2 cut(s) 899, 1136
MspA1I CMGCKG 1 cut(s) 1031
MspI CCGG 2 cut(s) 1346, 1367
MspR9I CCNGG 1 cut(s) 1346
Mva1269I GAATGC 1 cut(s) 889
MwoI GCNNNNNNNGC 8 cut(s) 197, 415, 449, 812, 854, 1034, 1053, 1239
NaeI GCCGGC 1 cut(s) 1368
NciI CCSGG 1 cut(s) 1346
NdeII GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
NgoMIV GCCGGC 1 cut(s) 1366
NlaIV GGNNCC 3 cut(s) 432, 444, 632
NmuCI GTSAC 3 cut(s) 373, 816, 1193
NsbI TGCGCA 1 cut(s) 858
NspI RCATGY 4 cut(s) 365, 374, 959, 1109
PceI AGGCCT 2 cut(s) 570, 1154
PciI ACATGT 2 cut(s) 370, 1105
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 45
PctI GAATGC 1 cut(s) 889
PdiI GCCGGC 1 cut(s) 1368
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 4 cut(s) 731, 1019, 1214, 1220
PkrI GCNGC 3 cut(s) 274, 761, 1030
PleI GAGTC 3 cut(s) 27, 154, 183
PpsI GAGTC 3 cut(s) 27, 154, 183
PscI ACATGT 2 cut(s) 370, 1105
Psp124BI GAGCTC 2 cut(s) 45, 1049
Psp1406I AACGTT 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 432, 444, 632
PspPI GGNCC 1 cut(s) 1128
PsuI RGATCY 1 cut(s) 999
RsaI GTAC 1 cut(s) 726
RsaNI GTAC 1 cut(s) 725
RseI CAYNNNNRTG 2 cut(s) 899, 1136
SacI GAGCTC 2 cut(s) 45, 1049
SalI GTCGAC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 6 cut(s) 219, 573, 638, 689, 941, 995
SatI GCNGC 3 cut(s) 273, 760, 1029
Sau3AI GATC 6 cut(s) 17, 291, 934, 999, 1081, 1277
Sau96I GGNCC 1 cut(s) 1128
SchI GAGTC 3 cut(s) 27, 155, 184
ScrFI CCNGG 1 cut(s) 1346
SduI GDGCHC 6 cut(s) 45, 202, 835, 1049, 1058, 1181
SfaNI GCATC 2 cut(s) 531, 744
SinI GGWCC 1 cut(s) 1128
SmiMI CAYNNNNRTG 2 cut(s) 899, 1136
SmlI CTYRAG 4 cut(s) 419, 612, 980, 1253
SmoI CTYRAG 4 cut(s) 419, 612, 980, 1253
Sse9I AATT 6 cut(s) 125, 635, 793, 838, 973, 1095
SseBI AGGCCT 2 cut(s) 570, 1154
SsiI CCGC 5 cut(s) 30, 272, 959, 1029, 1327
SspI AATATT 1 cut(s) 588
SspMI CTAG 4 cut(s) 447, 453, 459, 1404
SstI GAGCTC 2 cut(s) 45, 1049
StuI AGGCCT 2 cut(s) 570, 1154
StyD4I CCNGG 1 cut(s) 1344
TaaI ACNGT 2 cut(s) 518, 1270
TaiI ACGT 3 cut(s) 51, 321, 380
TaqI TCGA 5 cut(s) 39, 161, 211, 825, 1212
TasI AATT 6 cut(s) 125, 635, 793, 838, 973, 1095
TauI GCSGC 2 cut(s) 275, 1031
TfiI GAWTC 4 cut(s) 731, 1019, 1214, 1220
Tru1I TTAA 6 cut(s) 219, 573, 638, 689, 941, 995
Tru9I TTAA 6 cut(s) 219, 573, 638, 689, 941, 995
TscAI CASTG 3 cut(s) 307, 497, 523
TseFI GTSAC 3 cut(s) 373, 816, 1193
TseI GCWGC 1 cut(s) 759
Tsp45I GTSAC 3 cut(s) 373, 816, 1193
TspGWI ACGGA 2 cut(s) 365, 824
TspRI CASTG 3 cut(s) 307, 497, 523
VpaK11BI GGWCC 1 cut(s) 1128
XapI RAATTY 3 cut(s) 125, 793, 973
XceI RCATGY 4 cut(s) 365, 374, 959, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 4 cut(s) 447, 453, 459, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.