FvH4_7g17600

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017513
Physical Location & Seq
Forward (+)
14904177 .. 14906784
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17600.t1

Sequence Viewer

Length: 852 bp
ATGTTAATGTCTCAAGCAAGGCAATTTCAGATGATGGGAGGTAACAATAACATTCCAGGCCATCAGTACAATGACACAACTTTTACCAAAATCTTTGTTGGGGGTTTGGCTTGGGAGACTCAGAGGGAGACTATGAGGAGGTACTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTTATTACAGATAAAAACACCGGAAGATCCAAAGGCTATGGATTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGGGCTTGTCAGAATCCATCTCCTGTTATTGATGGAAGAAGAGCAAACTGCAATCTTGCTTCTCTTGGTGCACAGAAAACTCGTCCACCAACTGCTCAACATGGTTTAGGAAGGTTTAGACCAGCACCTGGTTTAGTAGCTCCACCTGCTTATCATGGTTCTTCATCCACATACTTCCATCAACCGACTGGTCAATACGCATTTCCTTATTCAGCATATGGGTACTCTGGATATTCACAAGATTCCATATATCCCATGAACTATTATAGTGTTTATGGTGGTCAACAATTCTCACCTTACTACACCACCACAACAGGGGCATCAGGACCAGCTGGCATGTACCACAATTACTACCCATACTATGCTTCTGCTCAATATGCACAAGCTAGTAGTAACCAAGCTCAAGGCTTTGGAGTTCAATATCCCCAAATGGTGCAATACCCCTATATACCTCAGCATTATGGCTCTTCAGCTGGGATTCTGTCACTTCCTTCTTCAGTCCCAATTACTACTACCATATCTACCACCACAGGTGTAACAGCAGCCACTGGGGTAACTGGAGCTTCTGCAACCAATTCGGAACATAATTCCTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

284

Amino Acids

30.78

Weight (kDa)

8.87

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 31 - 88 1.6e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17600
rosa_chinensis RchiOBHm_Chr1g0361041
rosa_laevigata RLG00000027753
rosa_multiflora Rmu_sc0000677.1_g000005
rosa_roxburghii Rroxscaffold_4G00295480
rosa_rugosa Rorug01G0284900 Rorug01G0285000
rosa_samantha Rh1AG296400 Rh1BG260700 Rh1CG278000 Rh1DG290700
rosa_wichuraiana Rw1G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 380
AclWI GGATC 3 cut(s) 198, 230, 243
AcuI CTGAAG 2 cut(s) 705, 732
AfaI GTAC 4 cut(s) 68, 143, 476, 593
AfiI CCNNNNNNNGG 2 cut(s) 380, 567
AgsI TTSAA 1 cut(s) 671
AjnI CCWGG 2 cut(s) 55, 379
AluBI AGCT 6 cut(s) 392, 584, 638, 653, 725, 815
AluI AGCT 6 cut(s) 392, 584, 638, 653, 725, 815
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 3 cut(s) 15, 110, 122
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 3 cut(s) 198, 230, 243
AlwNI CAGNNNCTG 2 cut(s) 380, 800
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 245, 794
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 2 cut(s) 257, 806
BccI CCATC 5 cut(s) 28, 69, 277, 278, 438
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 2 cut(s) 57, 381
BcoDI GTCTC 3 cut(s) 15, 110, 122
BfaI CTAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 162
BisI GCNGC 2 cut(s) 246, 795
BlsI GCNGC 2 cut(s) 247, 796
Bme1390I CCNGG 2 cut(s) 57, 381
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 57, 381
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 567
Bse1I ACTGG 3 cut(s) 445, 805, 814
BseBI CCWGG 2 cut(s) 57, 381
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 380, 567
BseMII CTCAG 2 cut(s) 134, 719
BseNI ACTGG 3 cut(s) 445, 805, 814
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 2 cut(s) 257, 806
BseYI CCCAGC 1 cut(s) 725
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 380, 567
BsmAI GTCTC 3 cut(s) 15, 110, 122
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 162, 203, 235
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 133, 718
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 3 cut(s) 198, 230, 243
BspQI GCTCTTC 2 cut(s) 286, 724
BsrI ACTGG 3 cut(s) 445, 805, 814
BssMI GATC 3 cut(s) 162, 203, 235
Bst2UI CCWGG 2 cut(s) 57, 381
Bst6I CTCTTC 2 cut(s) 286, 724
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 120, 705
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 3 cut(s) 165, 206, 238
BstMAI GTCTC 3 cut(s) 15, 110, 122
BstMBI GATC 3 cut(s) 162, 203, 235
BstMWI GCNNNNNNNGC 3 cut(s) 254, 398, 629
BstNI CCWGG 2 cut(s) 57, 381
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 55, 379
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 257, 806
BstX2I RGATCY 3 cut(s) 162, 203, 235
BstYI RGATCY 3 cut(s) 162, 203, 235
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 798
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 586
CaiI CAGNNNCTG 2 cut(s) 380, 800
Cfr13I GGNCC 1 cut(s) 578
CsiI ACCWGGT 1 cut(s) 379
Csp6I GTAC 4 cut(s) 67, 142, 475, 592
CviAII CATG 5 cut(s) 250, 353, 407, 508, 589
CviQI GTAC 4 cut(s) 67, 142, 475, 592
DdeI CTNAG 2 cut(s) 120, 705
DpnI GATC 3 cut(s) 164, 205, 237
DpnII GATC 3 cut(s) 162, 203, 235
Eam1104I CTCTTC 2 cut(s) 286, 724
EarI CTCTTC 2 cut(s) 286, 724
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 705, 732
Eco88I CYCGRG 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 55, 379
FaeI CATG 5 cut(s) 253, 356, 410, 511, 592
FaqI GGGAC 1 cut(s) 737
FatI CATG 5 cut(s) 249, 352, 406, 507, 588
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 246, 795
FokI GGATG 1 cut(s) 403
Fsp4HI GCNGC 2 cut(s) 246, 795
FspBI CTAG 1 cut(s) 639
GluI GCNGC 2 cut(s) 246, 795
GsaI CCCAGC 1 cut(s) 729
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 198
Hin1II CATG 5 cut(s) 253, 356, 410, 511, 592
HincII GTYRAC 1 cut(s) 536
HindII GTYRAC 1 cut(s) 536
HinfI GANTC 4 cut(s) 118, 265, 494, 730
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 537
Hpy166II GTNNAC 3 cut(s) 323, 338, 536
Hpy188I TCNGA 4 cut(s) 30, 123, 264, 832
Hpy188III TCNNGA 3 cut(s) 239, 480, 576
Hpy8I GTNNAC 3 cut(s) 323, 338, 536
HpyAV CCTTC 2 cut(s) 357, 753
HpyCH4V TGCA 5 cut(s) 303, 323, 632, 688, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 398, 629
HpyF3I CTNAG 2 cut(s) 120, 705
Hsp92II CATG 5 cut(s) 253, 356, 410, 511, 592
Kzo9I GATC 3 cut(s) 162, 203, 235
LguI GCTCTTC 2 cut(s) 286, 724
LmnI GCTCC 2 cut(s) 397, 812
Lsp1109I GCAGC 2 cut(s) 257, 806
LweI GCATC 1 cut(s) 581
MabI ACCWGGT 1 cut(s) 379
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 6 cut(s) 41, 223, 644, 735, 787, 805
MalI GATC 3 cut(s) 164, 205, 237
MboI GATC 3 cut(s) 162, 203, 235
MboII GAAGA 6 cut(s) 213, 300, 303, 405, 711, 738
MflI RGATCY 3 cut(s) 162, 203, 235
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 6 cut(s) 23, 539, 598, 756, 826, 838
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 8 cut(s) 32, 117, 129, 132, 163, 235, 246, 714
MseI TTAA 3 cut(s) 5, 231, 850
MspA1I CMGCKG 2 cut(s) 584, 725
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 57, 381
MvaI CCWGG 2 cut(s) 57, 381
MwoI GCNNNNNNNGC 3 cut(s) 254, 398, 629
NdeI CATATG 1 cut(s) 469
NdeII GATC 3 cut(s) 162, 203, 235
NlaIII CATG 5 cut(s) 253, 356, 410, 511, 592
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 223, 735
NspI RCATGY 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 844
PaqCI CACCTGC 1 cut(s) 406
PciSI GCTCTTC 2 cut(s) 286, 724
PfeI GAWTC 3 cut(s) 265, 494, 730
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 2 cut(s) 247, 796
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 55, 379
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 2 cut(s) 55, 379
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 578
PspXI VCTCGAGB 1 cut(s) 844
PstNI CAGNNNCTG 2 cut(s) 380, 800
PsuI RGATCY 3 cut(s) 162, 203, 235
PvuII CAGCTG 2 cut(s) 584, 725
RsaI GTAC 4 cut(s) 68, 143, 476, 593
RsaNI GTAC 4 cut(s) 67, 142, 475, 592
SapI GCTCTTC 2 cut(s) 286, 724
SaqAI TTAA 3 cut(s) 5, 231, 850
SatI GCNGC 2 cut(s) 246, 795
Sau3AI GATC 3 cut(s) 162, 203, 235
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 57, 381
SduI GDGCHC 1 cut(s) 325
SexAI ACCWGGT 1 cut(s) 379
SfaNI GCATC 1 cut(s) 581
Sfr274I CTCGAG 1 cut(s) 844
SinI GGWCC 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 844
SmlI CTYRAG 3 cut(s) 12, 654, 844
SmoI CTYRAG 3 cut(s) 12, 654, 844
Sse9I AATT 6 cut(s) 23, 539, 598, 756, 826, 838
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 55, 379
TaqI TCGA 1 cut(s) 845
TasI AATT 6 cut(s) 23, 539, 598, 756, 826, 838
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 3 cut(s) 265, 494, 730
Tru1I TTAA 3 cut(s) 5, 231, 850
Tru9I TTAA 3 cut(s) 5, 231, 850
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 2 cut(s) 223, 735
TseI GCWGC 2 cut(s) 245, 794
Tsp45I GTSAC 2 cut(s) 223, 735
TspDTI ATGAA 2 cut(s) 405, 524
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 578
XceI RCATGY 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XhoI CTCGAG 1 cut(s) 844
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.