Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0017513

Physical Location & Seq

Genomic Coordinates Reverse (-)

10987 .. 12677

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgtctcaagcaaggcaatttcagttggtggggggtaacaataatattccaggccatcaatacaatgacacaactttcaccaaaatctttgttgggggtttggcttgggagactcagagggagactatgaggaggtactttgagcagtttggagagatcttggaggctgttgttattacagataaaaacactggaagatccaaaggctatggatttgtcacatttaaggatccagaggcagccatgagggcttgtcagaacccatctcctgttattgatggaagaagagcaaactgcaatcttgcttctattggtgctcagaaaactcgtccacccactcctcaacatggttttggaaggtttagaccagcacctggtttggtagctccacctgcttatcatggctcttcatccacatacttccatcaacccagtggtcaatacacatttccttattcagcttatgggtactctggatattcacaagattccatatatcccatgaactattatagtgtttatggtggtcaacaattctcaccttactacaccaccacagctggggcatcagggccagctggcatgtaccacaattactacccatactatgctgctgctcaatatgcacaggctagtagtaaccaagcacaaggctttggagttcaatatccccaaatggtgcagtacccatatttgcctcaacactatggttcgtcagctgggattctctcacttccttcttcaatcccagttgctactaccacttcaaccaccacaggtgtaacaatagcctctggggtaactggagcttctgcaaccaattctgaacagaattcttcgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

281

Amino Acids

30.49

Weight (kDa)

8.87

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17600
rosa_chinensis	RchiOBHm_Chr1g0361041
rosa_laevigata	RLG00000027753
rosa_multiflora	Rmu_sc0000677.1_g000005
rosa_roxburghii	Rroxscaffold_4G00295480
rosa_rugosa	Rorug01G0284900 Rorug01G0285000
rosa_samantha	Rh1AG296400 Rh1BG260700 Rh1CG278000 Rh1DG290700
rosa_wichuraiana	Rw1G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	374
AclWI	GGATC	3 cut(s)	192, 224, 237
AcsI	RAATTY	1 cut(s)	832
AfaI	GTAC	4 cut(s)	137, 470, 587, 686
AfiI	CCNNNNNNNGG	3 cut(s)	347, 374, 561
AgsI	TTSAA	3 cut(s)	665, 744, 768
AjnI	CCWGG	2 cut(s)	49, 373
AluBI	AGCT	6 cut(s)	386, 461, 560, 578, 719, 809
AluI	AGCT	6 cut(s)	386, 461, 560, 578, 719, 809
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	3 cut(s)	9, 104, 116
AlwI	GGATC	3 cut(s)	192, 224, 237
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	52, 572
ApeKI	GCWGC	3 cut(s)	239, 611, 614
ApoI	RAATTY	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	70, 531
BamHI	GGATCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	251, 598, 601
BccI	CCATC	4 cut(s)	63, 271, 272, 432
BciT130I	CCWGG	2 cut(s)	51, 375
BcoDI	GTCTC	3 cut(s)	9, 104, 116
BfaI	CTAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	3 cut(s)	240, 612, 615
BlsI	GCNGC	3 cut(s)	241, 613, 616
Bme1390I	CCNGG	2 cut(s)	51, 375
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	51, 375
BmrI	ACTGGG	2 cut(s)	426, 743
BmsI	GCATC	1 cut(s)	575
BmuI	ACTGGG	2 cut(s)	426, 743
BpmI	CTGGAG	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 374, 561
Bse1I	ACTGG	4 cut(s)	196, 432, 749, 808
BseBI	CCWGG	2 cut(s)	51, 375
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	347, 374, 561
BseMII	CTCAG	2 cut(s)	128, 332
BseNI	ACTGG	4 cut(s)	196, 432, 749, 808
BseRI	GAGGAG	2 cut(s)	145, 330
BseXI	GCAGC	3 cut(s)	251, 598, 601
BseYI	CCCAGC	2 cut(s)	560, 719
BsgI	GTGCAG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	54, 574
BsiHKAI	GWGCWC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	347, 374, 561
BsmAI	GTCTC	3 cut(s)	9, 104, 116
BsnI	GGCC	2 cut(s)	54, 574
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	156, 197, 229
BspANI	GGCC	2 cut(s)	54, 574
BspCNI	CTCAG	2 cut(s)	127, 331
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	3 cut(s)	192, 224, 237
BspQI	GCTCTTC	2 cut(s)	280, 412
BsrI	ACTGG	4 cut(s)	196, 432, 749, 808
BssMI	GATC	3 cut(s)	156, 197, 229
Bst2UI	CCWGG	2 cut(s)	51, 375
Bst6I	CTCTTC	2 cut(s)	280, 412
BstC8I	GCNNGC	2 cut(s)	576, 580
BstDEI	CTNAG	2 cut(s)	114, 318
BstF5I	GGATG	1 cut(s)	410
BstKTI	GATC	3 cut(s)	159, 200, 232
BstMAI	GTCTC	3 cut(s)	9, 104, 116
BstMBI	GATC	3 cut(s)	156, 197, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 392, 623
BstNI	CCWGG	2 cut(s)	51, 375
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	49, 373
BstV1I	GCAGC	3 cut(s)	251, 598, 601
BstX2I	RGATCY	3 cut(s)	156, 197, 229
BstYI	RGATCY	3 cut(s)	156, 197, 229
BsuRI	GGCC	2 cut(s)	54, 574
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	189, 439
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	576, 580
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	136, 469, 586, 685
CviAII	CATG	5 cut(s)	244, 347, 401, 502, 583
CviQI	GTAC	4 cut(s)	136, 469, 586, 685
DdeI	CTNAG	2 cut(s)	114, 318
DpnI	GATC	3 cut(s)	158, 199, 231
DpnII	GATC	3 cut(s)	156, 197, 229
Eam1104I	CTCTTC	2 cut(s)	280, 412
EarI	CTCTTC	2 cut(s)	280, 412
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	49, 373
FaeI	CATG	5 cut(s)	247, 350, 404, 505, 586
FatI	CATG	5 cut(s)	243, 346, 400, 501, 582
Fnu4HI	GCNGC	3 cut(s)	240, 612, 615
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	240, 612, 615
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	3 cut(s)	240, 612, 615
GsaI	CCCAGC	2 cut(s)	564, 723
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	54, 574
Hin1II	CATG	5 cut(s)	247, 350, 404, 505, 586
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	112, 488, 724
HphI	GGTGA	2 cut(s)	70, 531
Hpy166II	GTNNAC	2 cut(s)	332, 530
Hpy188I	TCNGA	4 cut(s)	117, 258, 321, 826
Hpy188III	TCNNGA	2 cut(s)	233, 474
Hpy8I	GTNNAC	2 cut(s)	332, 530
HpyAV	CCTTC	2 cut(s)	351, 747
HpyCH4V	TGCA	4 cut(s)	297, 626, 682, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 392, 623
HpyF3I	CTNAG	2 cut(s)	114, 318
Hsp92II	CATG	5 cut(s)	247, 350, 404, 505, 586
Kzo9I	GATC	3 cut(s)	156, 197, 229
LguI	GCTCTTC	2 cut(s)	280, 412
LmnI	GCTCC	2 cut(s)	391, 806
Lsp1109I	GCAGC	3 cut(s)	251, 598, 601
LweI	GCATC	1 cut(s)	575
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	1 cut(s)	633
MaeIII	GTNAC	5 cut(s)	35, 217, 638, 781, 799
MalI	GATC	3 cut(s)	158, 199, 231
MboI	GATC	3 cut(s)	156, 197, 229
MboII	GAAGA	6 cut(s)	207, 294, 297, 399, 732, 828
MflI	RGATCY	3 cut(s)	156, 197, 229
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	5 cut(s)	17, 533, 592, 820, 832
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	9 cut(s)	111, 123, 126, 157, 229, 240, 351, 708, 802
MseI	TTAA	2 cut(s)	225, 844
MspA1I	CMGCKG	3 cut(s)	560, 578, 719
MspR9I	CCNGG	2 cut(s)	51, 375
MvaI	CCWGG	2 cut(s)	51, 375
MwoI	GCNNNNNNNGC	3 cut(s)	248, 392, 623
NdeII	GATC	3 cut(s)	156, 197, 229
NlaIII	CATG	5 cut(s)	247, 350, 404, 505, 586
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	586
PaqCI	CACCTGC	1 cut(s)	400
PciSI	GCTCTTC	2 cut(s)	280, 412
PfeI	GAWTC	2 cut(s)	488, 724
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	241, 613, 616
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	49, 373
PspFI	CCCAGC	2 cut(s)	560, 719
PspGI	CCWGG	2 cut(s)	49, 373
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	3 cut(s)	156, 197, 229
PvuII	CAGCTG	3 cut(s)	560, 578, 719
RsaI	GTAC	4 cut(s)	137, 470, 587, 686
RsaNI	GTAC	4 cut(s)	136, 469, 586, 685
SapI	GCTCTTC	2 cut(s)	280, 412
SaqAI	TTAA	2 cut(s)	225, 844
SatI	GCNGC	3 cut(s)	240, 612, 615
Sau3AI	GATC	3 cut(s)	156, 197, 229
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	51, 375
SduI	GDGCHC	1 cut(s)	319
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	17, 533, 592, 820, 832
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	49, 373
TaqI	TCGA	1 cut(s)	839
TasI	AATT	5 cut(s)	17, 533, 592, 820, 832
TfiI	GAWTC	2 cut(s)	488, 724
Tru1I	TTAA	2 cut(s)	225, 844
Tru9I	TTAA	2 cut(s)	225, 844
TscAI	CASTG	2 cut(s)	196, 439
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	3 cut(s)	239, 611, 614
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	399, 518
TspRI	CASTG	2 cut(s)	196, 439
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.