Rorug01G0285000

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017513
Physical Location & Seq
Reverse (-)
39936387 .. 39941150
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0285000.1

Sequence Viewer

Length: 1056 bp
ATGTCGGAAGGCGACATGGCGGTTATTAAACCTAAGATGTTGAAGTCTTATATCTGGCTTCAGACTACTGATGGTTCAATCCAACAAGTGGAGCAAGAGGTTGCCATGTTTTGCCCGTTGATATGTCGAGAAGTTATACAAAAAGGGATGGGATCTTCCAAGACCCATGCGATATCTCTTCCAGAAAGAGTAAACACTGCCATGTTGAGCCTAATTCTTGATTACTGCAGGTTTCATCAAGTACTGGGTCGCTCTAATAAGGAATGCAAGTCGTTTGATGAAAAATTTATTCGAATGGACACGCAGAGGCTCTGTGAGTTGACATCAGCTGCTGATAGCCTCCAGTTAAAGCCATTGGTTGATCTGACCAGTCGTGCTCTTGCACGAATAATTGAAGGGAAAACGCCTGAGGAGATACGTGAGATATTTCATCTTCCCGATGATCTTACAGAGGAAGAGAAGTTGGAGCCGTTGAAAAATGTGACTGATGATCCACGGATACGGCTTTTGAATCGACTGTATGCAAGAAAGAGGAAAGAACTTAAGGAAAGAGAGAAATTGAAGAATACTGAGAATGGAGAGCGAAATGATGACCGTTCAGTAGACGATCTCTTGTCATTCATTAACGGAGAAATTGGAGATTCCAAAGAGATCAAATCATCCAAGAATAAAAAGAAGAATCGTAGAAGAAAAGATCAACAGAAAAATACTTGTCTATATGAGGCCAATGGCAGCCATGAGGAGCCGAAAAGTTTAAAGTTTGTTTGCCCCAGTGACGAAGTCAACAAATTTAGGCCCAGTCCCAGTTTGACATTAACGTTACAAGATCTGGAACATGACAGTCTGAATGATCAGCTTGAGTTTGTTGATGGTGATATCGATGATGAGATTGATCCAGCTTTAAAAGCACAAATTGATAGGGAGGTTGAAGATTTTGCTCGGAGGTTGAATTCTGACTGGCCTCAAAGGATGCAAGAAATTCTATCTTTGGGTCAAGAAAGGAGGCGGGCGCAATTTTCCATTAACGGAAATGAATCTTTAAGAAGATATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

351

Amino Acids

40.67

Weight (kDa)

5.79

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1 PF01466 117 - 155 1e-12 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17600
rosa_chinensis RchiOBHm_Chr1g0361041
rosa_laevigata RLG00000027753
rosa_multiflora Rmu_sc0000677.1_g000005
rosa_roxburghii Rroxscaffold_4G00295480
rosa_rugosa Rorug01G0284900 Rorug01G0285000
rosa_samantha Rh1AG296400 Rh1BG260700 Rh1CG278000 Rh1DG290700
rosa_wichuraiana Rw1G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 603
AciI CCGC 2 cut(s) 20, 1006
AclI AACGTT 1 cut(s) 818
AclWI GGATC 3 cut(s) 160, 485, 887
AcsI RAATTY 4 cut(s) 284, 788, 949, 978
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 88
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 8 cut(s) 43, 78, 395, 475, 511, 562, 929, 949
AluBI AGCT 3 cut(s) 329, 856, 899
AluI AGCT 3 cut(s) 329, 856, 899
Alw21I GWGCWC 1 cut(s) 379
AlwI GGATC 3 cut(s) 160, 485, 887
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 3 cut(s) 723, 794, 959
ApeKI GCWGC 2 cut(s) 329, 732
ApoI RAATTY 4 cut(s) 284, 788, 949, 978
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 884
AsuII TTCGAA 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 316, 744
BccI CCATC 3 cut(s) 65, 142, 863
BceAI ACGGC 2 cut(s) 454, 518
BciVI GTATCC 1 cut(s) 492
BclI TGATCA 1 cut(s) 850
BfmI CTRYAG 1 cut(s) 226
BfrI CTTAAG 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 219
BfuI GTATCC 1 cut(s) 492
BglII AGATCT 1 cut(s) 826
BisI GCNGC 2 cut(s) 330, 733
BlsI GCNGC 2 cut(s) 331, 734
BmcAI AGTACT 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 2 cut(s) 468, 744
BmrI ACTGGG 4 cut(s) 254, 765, 792, 798
BmsI GCATC 1 cut(s) 960
BmuI ACTGGG 4 cut(s) 254, 765, 792, 798
BpmI CTGGAG 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 878
Bsa29I ATCGAT 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 7 cut(s) 249, 343, 369, 771, 798, 804, 962
Bse21I CCTNAGG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 879
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 3 cut(s) 153, 659, 975
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 399, 561
BseNI ACTGG 7 cut(s) 249, 343, 369, 771, 798, 804, 962
BseRI GAGGAG 2 cut(s) 425, 755
BseXI GCAGC 2 cut(s) 316, 744
BshFI GGCC 3 cut(s) 725, 796, 961
BshVI ATCGAT 1 cut(s) 879
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 786
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 3 cut(s) 725, 796, 961
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 379
BspACI CCGC 2 cut(s) 20, 1006
BspANI GGCC 3 cut(s) 725, 796, 961
BspCNI CTCAG 2 cut(s) 400, 562
BspDI ATCGAT 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 468, 744
BspMAI CTGCAG 1 cut(s) 230
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 3 cut(s) 160, 485, 887
BspT104I TTCGAA 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 542
BsrI ACTGG 7 cut(s) 249, 343, 369, 771, 798, 804, 962
BssECI CCNNGG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 519, 596, 842
Bst6I CTCTTC 2 cut(s) 183, 450
BstAFI CTTAAG 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 3 cut(s) 33, 408, 570
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 153, 659, 975
BstHHI GCGC 1 cut(s) 1012
BstMWI GCNNNNNNNGC 1 cut(s) 905
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 316, 744
BstX2I RGATCY 2 cut(s) 152, 826
BstYI RGATCY 2 cut(s) 152, 826
Bsu15I ATCGAT 1 cut(s) 879
Bsu36I CCTNAGG 1 cut(s) 408
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 3 cut(s) 725, 796, 961
BsuTUI ATCGAT 1 cut(s) 879
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 3 cut(s) 153, 659, 975
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 195, 778
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 1008
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 1012
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 879
Csp6I GTAC 1 cut(s) 242
CviAII CATG 6 cut(s) 16, 106, 167, 202, 737, 836
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 3 cut(s) 33, 408, 570
DraI TTTAAA 2 cut(s) 756, 903
Eam1104I CTCTTC 2 cut(s) 183, 450
EarI CTCTTC 2 cut(s) 183, 450
Eco32I GATATC 2 cut(s) 174, 877
Eco57I CTGAAG 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 949
EcoRV GATATC 2 cut(s) 174, 877
FaeI CATG 6 cut(s) 19, 109, 170, 205, 740, 839
FalI AAGNNNNNCTT 1 cut(s) 1036
FaqI GGGAC 1 cut(s) 786
FatI CATG 6 cut(s) 15, 105, 166, 201, 736, 835
FauI CCCGC 1 cut(s) 999
FbaI TGATCA 1 cut(s) 850
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 330, 733
FokI GGATG 3 cut(s) 160, 646, 982
Fsp4HI GCNGC 2 cut(s) 330, 733
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 2 cut(s) 330, 733
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 725, 796, 961
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 6 cut(s) 19, 109, 170, 205, 740, 839
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 2 cut(s) 321, 784
HindII GTYRAC 2 cut(s) 321, 784
HinfI GANTC 4 cut(s) 511, 641, 679, 1034
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 4 cut(s) 193, 321, 604, 784
Hpy188I TCNGA 6 cut(s) 7, 63, 366, 846, 942, 955
Hpy188III TCNNGA 6 cut(s) 128, 182, 218, 437, 830, 995
Hpy8I GTNNAC 4 cut(s) 193, 321, 604, 784
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 3 cut(s) 519, 596, 842
HpyCH4IV ACGT 2 cut(s) 418, 818
HpyCH4V TGCA 5 cut(s) 228, 267, 383, 524, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 905
HpyF3I CTNAG 3 cut(s) 33, 408, 570
HpySE526I ACGT 2 cut(s) 418, 818
Hsp92II CATG 6 cut(s) 19, 109, 170, 205, 740, 839
HspAI GCGC 1 cut(s) 1010
Ksp22I TGATCA 1 cut(s) 850
LmnI GCTCC 3 cut(s) 91, 466, 742
Lsp1109I GCAGC 2 cut(s) 316, 744
LweI GCATC 1 cut(s) 960
MaeII ACGT 2 cut(s) 418, 818
MaeIII GTNAC 3 cut(s) 481, 773, 819
MboII GAAGA 9 cut(s) 147, 170, 425, 467, 574, 688, 699, 941, 1056
MflI RGATCY 2 cut(s) 152, 826
MhlI GDGCHC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 106, 444
MseI TTAA 9 cut(s) 27, 347, 543, 624, 755, 815, 902, 1023, 1040
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 905
NlaIII CATG 6 cut(s) 19, 109, 170, 205, 740, 839
NlaIV GGNNCC 2 cut(s) 468, 744
NmuCI GTSAC 2 cut(s) 481, 773
NspV TTCGAA 1 cut(s) 292
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 4 cut(s) 511, 641, 679, 1034
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 331, 734
Ppu21I YACGTR 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 818
PspN4I GGNNCC 2 cut(s) 468, 744
PspPI GGNCC 1 cut(s) 795
PstI CTGCAG 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 2 cut(s) 152, 826
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 9 cut(s) 27, 347, 543, 624, 755, 815, 902, 1023, 1040
SatI GCNGC 2 cut(s) 330, 733
Sau96I GGNCC 1 cut(s) 795
ScaI AGTACT 1 cut(s) 243
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 1 cut(s) 960
SfcI CTRYAG 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 542, 857
SmoI CTYRAG 2 cut(s) 542, 857
SsiI CCGC 2 cut(s) 20, 1006
TaaI ACNGT 3 cut(s) 519, 596, 842
TaiI ACGT 2 cut(s) 421, 821
TaqI TCGA 4 cut(s) 127, 292, 514, 879
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 4 cut(s) 511, 641, 679, 1034
Tru1I TTAA 9 cut(s) 27, 347, 543, 624, 755, 815, 902, 1023, 1040
Tru9I TTAA 9 cut(s) 27, 347, 543, 624, 755, 815, 902, 1023, 1040
TscAI CASTG 2 cut(s) 202, 778
TseFI GTSAC 2 cut(s) 481, 773
TseI GCWGC 2 cut(s) 329, 732
Tsp45I GTSAC 2 cut(s) 481, 773
TspDTI ATGAA 5 cut(s) 224, 294, 419, 610, 1047
TspGWI ACGGA 3 cut(s) 511, 642, 1041
TspRI CASTG 2 cut(s) 202, 778
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 4 cut(s) 284, 788, 949, 978
XmiI GTMKAC 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.