Rorug01G0284900

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017513
Physical Location & Seq
Reverse (-)
39932203 .. 39935331
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0284900.1

Sequence Viewer

Length: 3003 bp
ATGCAATTGAACCATCCGAGGCTCGAAGGGAATGAGACGGATAGACTGGCATTGCTGGCAATCAAAGCTCAGATACAACACGATCCGAACCGGGTCACAAGCTCATGGAATGAATCCCTTCATTTTTGCCTGTGGCACGGCGTCACCTGCAGTCGACGACATCGCCAAAGGGTGACGAAGCTGGAGTTGGGCTCTCTAGATTTGGGGGGATCCATATCTCCACACATAGGAAATCTAAGCTTCTTAAGAGTGCTAGATCTCGAAAACAATAGCTTCACTCATCAAATCCCTCCTCAAATTGGGCATTTGCATAGTTTGCAGGTATTGTATCTAAACAATAACTCACTTACTGGCACCATTCCTGCCAATATATCCAATTGCTTCAAACTCATCACTCTCCGTCTTGAAAGAAACAATCTAGTGGGTAAAATTCCTCCCATACTGAGTTCCTTGTCAAAGCTTCAGACTTTTGTTTTGGAAAAAAACAATTTAACAGGAGAGATCCCTCCTTCTTTGGGGAACCTTTCTTCTCTCGAGGCATTTTCTATAGGTCGTAATAACTTAGAAGGAAGCATTCCTAGTTCTCTATGCCAGTTCAAAAGATTAACAGGTATCTATTTAGGCTCAAATAGGTTATCTGGTATCATCCCTTCCTGCATTTACAACCTCTCTGGTATAGTTATTTTCGGCTTAGAAGAAAACCAAATTGAAGGAAGTCTTCCCTCAAACTTAGGCAGTGCTTTTCCCAACCTTGAATGGTTTTCCATTTTTGAGAATCAATTTACTGGGGCCATCCCTTGGTCAATATCCAATGCAACATATCTTGTGGCGTTTCAATGTCAACAAAACGAACTCAATGGACAGGTGCCAAATTTACGAAATCTTCATAACATTGTGAGGTTCGTTGCCTCTGGTAATAATCTTGGAAGCAGTAAAGATGGTGACTTGAGTTTTGTCTCAGAATTGATCAATGCCACACAGCTAACTATATTGGTTTTCGAGGAAAACAATTTTGGAGGCACGTTGCCCGCATCAATATCCAATCTCTCAAACAATCTCCAAATCCTTGTAGTTGGAGAAAACCACCTACATGGGAGCATCCCAACTGGATTAGGGAATCTTGTCAACCTGCAAATACTCAGTATGGAGGAAAACAACTTCAGAGGTAGCATCCCGATAGATATTGGGAAAGTTTTAAGGCTTGGGTTAATTCATCTTAGTAGCAACAAGTTATCCGGGAGCATTCCATCTTCTCTTGGAAATTTAACAATGTTAAACATTCTTCACTTGGATGGAAATAATCTCAATGGCAGCATCCCTTCAAGCCTAGGAGAATGTCACGGGTTGCTAGTGTTGGATCTTTCTCAAAATAGCTTAGAAGGCAAAATACCTCAACAATTACTTATTGGTCTCCTCTCTTTATCAATTTCTTTGAACTTGTCAACAAACCACTTTACTGGTTCCCTTCCTGTTGAGATTGGAAAGTTGAAGGCTCTAGGTGAGCTAGATATTTCTAACAATATGTTATCGGGAGAACTTCCTAGTAGCCTCGGTAGTTGTCAGAGTCTAGAAGTCTTACACTTGCAAGGCAACATCTTCAACGGGACCATCCCTTCATCTATGAAGGAACTAAGAGGGATTCGAGATTTAGACCTTTCTCGCAACAATTTGTCAGGAGATATTCCACAATTTCTTGAGAATCTGAACTTGGAGTACCTGAACCTCTCCTTCAACCAGTTTTGGGGAGCTGTACCAACTGGCGGTGTTTTTAAGAATGCAAGTGCGACTTCAGTTGCTGGAAATGCTAGACTCTGCGGAGGTATGGCTATTCTTCGACTTCCTCTGTGCAAGCTTAATGAGTCTAAAGGAGAAGGGCTGTCTCGTAGAATGAAACTAATGATCTCTTTAGTCTCCGGGTTCACTCTCTTGGGACTGGTTGTGGTGCTGTCTCTTTTTCTTCTTGGTAAGAAAAGGAAAGAAACTAATTTAAGCATTTTGGGGAACTCTGTTTTGCAAGTTTCATATGCTACACTCCTCAGAGCTACTGATGGTTTTTCTTCAGCTAATTTGATCGGTGTGGGTGCTTTTGGGTCAGTGTACAAAGGAATCCTTACTGATGATAGAGTTGTTGTCGCTGTGAAGGTCCTTAACATGTTACACCGGGGAGCAGCTAAAAGTTTCATGGCCGAATGTGAGGCATTGAGAAATATCAGACATCGTAATCTGGTCAAGATCTTAACTGCATGTTCAAGTATTGATTTTGGCGGCAATGATTTCAAGGCTCTTGTTTACGAGTTCATGGACAACGGGAGCTTGGGAGAGTGGTTGCATCCATCTATTGGAACTGGAGAGGTAACAGAAGCACCCAAAATTTTAAGTCTTATTCAGAGGCTCAACATTGCTATTGATGTTGCTAGTGCATTGGATTATCTTCACAACCATTGTGAAACACCGATCGTTCATTGTGATCTCAAGCCAAGTAATGTTCTTTTGGATGGTGACCTGACTGGACATGTTTCCGACTTTGGGCTGTCAAGGTTTCTCTCAGAACCAACCACGAGTGTTTCTAGAAATCAATTAAGCTCCATTGGAATTAGAGGATCGGTTGGCTATGTTGCACCAGAGTATGGTATGGGAAGTGAGGTATCTACATACGGGGATATCTACAGCTTTGGCATTCTCTTGTTAGAAATGTTTACGGGGAAGCGACCCACTGATTACATGTTTAATGACAGCTTGAATCTTCATAATTATGTGAAGACAGCTCTCCCTGAACTGGTTTCAGAGATTTCAGAATCACTTGTTCTTCAAGAAGGCACCACCAATGTCACTGAAGCTCACAGGCACAGCCGATTGAGTGTGAGAGCACAGAAAATTGAAGAGTGCTTGACTCTGATACTTGGTATAGGAATTGCATGTTCTGTTGAATCCCCCACAAACAGAAAGGATATCAGTGATGTTGCATCTGAATTGCAATCCATTAGGCGCAATCTTCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1000

Amino Acids

108.6

Weight (kDa)

6.27

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 12 - 51 1.8e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 66 - 159 8.1e-10 Leucine-rich repeat region
LRR_14 PF23598 441 - 575 7e-10 Leucine-rich repeat region
LRR_8 PF13855 522 - 580 2.4e-06 Leucine rich repeat
Pkinase PF00069 687 - 917 4.3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 689 - 912 2.6e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17600
rosa_chinensis RchiOBHm_Chr1g0361041
rosa_laevigata RLG00000027753
rosa_multiflora Rmu_sc0000677.1_g000005
rosa_roxburghii Rroxscaffold_4G00295480
rosa_rugosa Rorug01G0284900 Rorug01G0285000
rosa_samantha Rh1AG296400 Rh1BG260700 Rh1CG278000 Rh1DG290700
rosa_wichuraiana Rw1G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 3 cut(s) 155, 310, 1137
AccB1I GGYRCC 3 cut(s) 353, 865, 2816
AccB7I CCANNNNNTGG 3 cut(s) 798, 2339, 2627
AccI GTMKAC 1 cut(s) 154
AciI CCGC 4 cut(s) 1029, 1761, 1815, 2265
AclWI GGATC 6 cut(s) 77, 204, 217, 496, 1365, 2608
AcoI YGGCCR 1 cut(s) 2184
AcsI RAATTY 4 cut(s) 429, 871, 1261, 2370
AcuI CTGAAG 5 cut(s) 446, 1144, 1773, 2043, 2853
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 1715, 1752, 2099
AflII CTTAAG 1 cut(s) 244
AflIII ACRYGT 3 cut(s) 2151, 2512, 2721
AjuI GAANNNNNNNTTGG 6 cut(s) 170, 202, 996, 1028, 1691, 1723
Alw21I GWGCWC 1 cut(s) 2869
Alw26I GTCTC 6 cut(s) 29, 961, 1415, 1884, 1915, 1953
AlwI GGATC 6 cut(s) 77, 204, 217, 496, 1365, 2608
AlwNI CAGNNNCTG 1 cut(s) 1796
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 2 cut(s) 789, 2184
ApeKI GCWGC 2 cut(s) 1311, 2168
ApoI RAATTY 4 cut(s) 429, 871, 1261, 2370
ArsI GACNNNNNNTTYG 4 cut(s) 457, 489, 935, 967
Asp700I GAANNNNTTC 1 cut(s) 117
AspA2I CCTAGG 1 cut(s) 1327
AspLEI GCGC 1 cut(s) 2988
AspS9I GGNCC 3 cut(s) 789, 1605, 2143
AsuC2I CCSGG 4 cut(s) 92, 1237, 1915, 2162
AsuHPI GGTGA 5 cut(s) 136, 184, 953, 1511, 2510
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 1605, 2143
AvrII CCTAGG 1 cut(s) 1327
BamHI GGATCC 1 cut(s) 209
BanI GGYRCC 3 cut(s) 353, 865, 2816
BanII GRGCYC 1 cut(s) 194
BarI GAAGNNNNNNTAC 4 cut(s) 634, 666, 1371, 1403
BauI CACGAG 1 cut(s) 2557
BbsI GAAGAC 2 cut(s) 710, 2765
Bbv12I GWGCWC 1 cut(s) 2869
BbvI GCAGC 2 cut(s) 1323, 2180
BccI CCATC 9 cut(s) 21, 800, 932, 1255, 1286, 1616, 2042, 2341, 2489
BceAI ACGGC 1 cut(s) 154
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 4 cut(s) 92, 1237, 1915, 2162
BcoDI GTCTC 6 cut(s) 29, 961, 1415, 1884, 1915, 1953
BfmI CTRYAG 3 cut(s) 148, 546, 2665
BfrI CTTAAG 1 cut(s) 244
BfuAI ACCTGC 3 cut(s) 155, 310, 1137
BglII AGATCT 2 cut(s) 256, 2232
BisI GCNGC 3 cut(s) 1312, 2169, 2266
BlnI CCTAGG 1 cut(s) 1327
BlsI GCNGC 3 cut(s) 1313, 2170, 2267
Bme1390I CCNGG 4 cut(s) 92, 1237, 1915, 2162
Bme18I GGWCC 2 cut(s) 1605, 2143
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 3 cut(s) 789, 1605, 2143
BmiI GGNNCC 8 cut(s) 211, 355, 521, 790, 867, 1462, 1606, 2818
BmrFI CCNGG 4 cut(s) 92, 1237, 1915, 2162
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 6 cut(s) 1040, 1107, 1179, 1323, 2338, 2972
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 2 cut(s) 710, 2765
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 2 cut(s) 203, 2367
BpuEI CTTGAG 3 cut(s) 967, 1715, 2456
BpuMI CCSGG 4 cut(s) 92, 1237, 1915, 2162
BsaBI GATNNNNATC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 1415
BsaJI CCNNGG 5 cut(s) 17, 797, 1327, 1549, 2161
Bse3DI GCAATG 3 cut(s) 50, 2275, 2397
Bse8I GATNNNNATC 1 cut(s) 214
BseDI CCNNGG 5 cut(s) 17, 797, 1327, 1549, 2161
BseJI GATNNNNATC 1 cut(s) 214
BseMI GCAATG 3 cut(s) 50, 2275, 2397
BseMII CTCAG 6 cut(s) 83, 434, 972, 1153, 2050, 2559
BseRI GAGGAG 3 cut(s) 282, 1403, 2024
BseXI GCAGC 2 cut(s) 1323, 2180
Bsh1285I CGRYCG 1 cut(s) 2457
BshFI GGCC 2 cut(s) 791, 2186
BshNI GGYRCC 3 cut(s) 353, 865, 2816
BsiEI CGRYCG 1 cut(s) 2457
BsiHKAI GWGCWC 1 cut(s) 2869
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 4 cut(s) 91, 1236, 1914, 2161
BslFI GGGAC 2 cut(s) 1618, 1944
BsmAI GTCTC 6 cut(s) 29, 961, 1415, 1884, 1915, 1953
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 1618, 1944
BsmI GAATGC 4 cut(s) 573, 1242, 1780, 2676
BsnI GGCC 2 cut(s) 791, 2186
Bso31I GGTCTC 1 cut(s) 1415
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 194, 2869
Bsp1407I TGTACA 1 cut(s) 2097
BspACI CCGC 4 cut(s) 1029, 1761, 1815, 2265
BspANI GGCC 2 cut(s) 791, 2186
BspCNI CTCAG 6 cut(s) 82, 435, 971, 1152, 2049, 2558
BspLI GGNNCC 8 cut(s) 211, 355, 521, 790, 867, 1462, 1606, 2818
BspMAI CTGCAG 1 cut(s) 152
BspMI ACCTGC 3 cut(s) 155, 310, 1137
BspPI GGATC 6 cut(s) 77, 204, 217, 496, 1365, 2608
BspT107I GGYRCC 3 cut(s) 353, 865, 2816
BspTI CTTAAG 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 1415
BsrDI GCAATG 3 cut(s) 50, 2275, 2397
BsrGI TGTACA 1 cut(s) 2097
BssECI CCNNGG 5 cut(s) 17, 797, 1327, 1549, 2161
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 2557
BssT1I CCWWGG 2 cut(s) 797, 1327
Bst2BI CACGAG 1 cut(s) 2557
Bst6I CTCTTC 1 cut(s) 2874
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 2097
BstC8I GCNNGC 3 cut(s) 57, 1029, 1850
BstEII GGTNACC 1 cut(s) 2498
BstHHI GCGC 1 cut(s) 2988
BstMAI GTCTC 6 cut(s) 29, 961, 1415, 1884, 1915, 1953
BstMCI CGRYCG 1 cut(s) 2457
BstMWI GCNNNNNNNGC 6 cut(s) 56, 65, 147, 316, 1380, 1802
BstNSI RCATGY 5 cut(s) 2155, 2247, 2516, 2725, 2919
BstPI GGTNACC 1 cut(s) 2498
BstSCI CCNGG 4 cut(s) 90, 1235, 1913, 2160
BstSFI CTRYAG 3 cut(s) 148, 546, 2665
BstV1I GCAGC 2 cut(s) 1323, 2180
BstV2I GAAGAC 2 cut(s) 710, 2765
BstX2I RGATCY 5 cut(s) 209, 256, 501, 1357, 2232
BstXI CCANNNNNNTGG 2 cut(s) 1091, 1457
BstYI RGATCY 5 cut(s) 209, 256, 501, 1357, 2232
BsuRI GGCC 2 cut(s) 791, 2186
BtgZI GCGATG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 5 cut(s) 742, 2100, 2712, 2829, 2959
BveI ACCTGC 3 cut(s) 155, 310, 1137
Cac8I GCNNGC 3 cut(s) 57, 1029, 1850
CaiI CAGNNNCTG 1 cut(s) 1796
CfoI GCGC 1 cut(s) 2988
Cfr13I GGNCC 3 cut(s) 789, 1605, 2143
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 1714, 1751, 2098
CviAII CATG 9 cut(s) 105, 1091, 2152, 2182, 2244, 2299, 2513, 2722, 2916
CviQI GTAC 3 cut(s) 1714, 1751, 2098
EaeI YGGCCR 1 cut(s) 2184
Eam1104I CTCTTC 1 cut(s) 2874
EarI CTCTTC 1 cut(s) 2874
Eco130I CCWWGG 2 cut(s) 797, 1327
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 1415
Eco32I GATATC 2 cut(s) 2662, 2950
Eco47I GGWCC 2 cut(s) 1605, 2143
Eco57I CTGAAG 5 cut(s) 446, 1144, 1773, 2043, 2853
Eco88I CYCGRG 1 cut(s) 533
Eco91I GGTNACC 1 cut(s) 2498
EcoO109I RGGNCCY 1 cut(s) 2143
EcoO65I GGTNACC 1 cut(s) 2498
EcoRV GATATC 2 cut(s) 2662, 2950
EcoT14I CCWWGG 2 cut(s) 797, 1327
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 797, 1327
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 9 cut(s) 108, 1094, 2155, 2185, 2247, 2302, 2516, 2725, 2919
FalI AAGNNNNNCTT 6 cut(s) 702, 734, 1771, 1803, 2094, 2126
FaqI GGGAC 2 cut(s) 1618, 1944
FatI CATG 9 cut(s) 104, 1090, 2151, 2181, 2243, 2298, 2512, 2721, 2915
FauI CCCGC 1 cut(s) 1036
FauNDI CATATG 1 cut(s) 2023
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 1312, 2169, 2266
FokI GGATG 9 cut(s) 632, 779, 1085, 1157, 1301, 1304, 1595, 2316, 2507
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 1312, 2169, 2266
GlaI GCGC 1 cut(s) 2987
GluI GCNGC 3 cut(s) 1312, 2169, 2266
GsuI CTGGAG 2 cut(s) 203, 2367
HaeIII GGCC 2 cut(s) 791, 2186
HapII CCGG 4 cut(s) 91, 1236, 1914, 2161
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 2988
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 9 cut(s) 108, 1094, 2155, 2185, 2247, 2302, 2516, 2725, 2919
Hin6I GCGC 1 cut(s) 2986
HinP1I GCGC 1 cut(s) 2986
HincII GTYRAC 4 cut(s) 155, 842, 1126, 1443
HindII GTYRAC 4 cut(s) 155, 842, 1126, 1443
HindIII AAGCTT 3 cut(s) 238, 458, 1850
HpaII CCGG 4 cut(s) 91, 1236, 1914, 2161
HphI GGTGA 5 cut(s) 136, 184, 953, 1511, 2510
Hpy166II GTNNAC 8 cut(s) 155, 842, 1126, 1443, 1920, 2098, 2290, 2697
Hpy8I GTNNAC 8 cut(s) 155, 842, 1126, 1443, 1920, 2098, 2290, 2697
Hpy99I CGWCG 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 65, 147, 316, 1380, 1802
HpySE526I ACGT 1 cut(s) 1022
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 9 cut(s) 108, 1094, 2155, 2185, 2247, 2302, 2516, 2725, 2919
HspAI GCGC 1 cut(s) 2986
Ksp22I TGATCA 1 cut(s) 966
LmnI GCTCC 6 cut(s) 1095, 1239, 1745, 2165, 2310, 2588
Lsp1109I GCAGC 2 cut(s) 1323, 2180
LweI GCATC 6 cut(s) 1040, 1107, 1179, 1323, 2338, 2972
MaeII ACGT 1 cut(s) 1022
MaeIII GTNAC 9 cut(s) 94, 142, 172, 941, 1337, 2154, 2353, 2498, 2827
MfeI CAATTG 2 cut(s) 5, 376
MflI RGATCY 5 cut(s) 209, 256, 501, 1357, 2232
MhlI GDGCHC 2 cut(s) 194, 2869
MlyI GAGTC 4 cut(s) 1573, 1803, 1868, 2884
MmeI TCCRAC 3 cut(s) 1054, 1335, 2544
MroXI GAANNNNTTC 1 cut(s) 117
MslI CAYNNNNRTG 3 cut(s) 1089, 1290, 2751
MspCI CTTAAG 1 cut(s) 244
MspI CCGG 4 cut(s) 91, 1236, 1914, 2161
MspR9I CCNGG 4 cut(s) 92, 1237, 1915, 2162
MunI CAATTG 2 cut(s) 5, 376
Mva1269I GAATGC 4 cut(s) 573, 1242, 1780, 2676
MwoI GCNNNNNNNGC 6 cut(s) 56, 65, 147, 316, 1380, 1802
NciI CCSGG 4 cut(s) 92, 1237, 1915, 2162
NdeI CATATG 1 cut(s) 2023
NlaIII CATG 9 cut(s) 108, 1094, 2155, 2185, 2247, 2302, 2516, 2725, 2919
NlaIV GGNNCC 8 cut(s) 211, 355, 521, 790, 867, 1462, 1606, 2818
NmuCI GTSAC 7 cut(s) 94, 142, 172, 941, 1337, 2498, 2827
NspI RCATGY 5 cut(s) 2155, 2247, 2516, 2725, 2919
PaeR7I CTCGAG 1 cut(s) 533
PaqCI CACCTGC 1 cut(s) 155
PciI ACATGT 3 cut(s) 2151, 2512, 2721
PctI GAATGC 4 cut(s) 573, 1242, 1780, 2676
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 9 cut(s) 113, 775, 1117, 1639, 1699, 2106, 2740, 2795, 2927
PflMI CCANNNNNTGG 3 cut(s) 798, 2339, 2627
PfoI TCCNGGA 1 cut(s) 1235
PkrI GCNGC 3 cut(s) 1313, 2170, 2267
Ple19I CGATCG 1 cut(s) 2457
PleI GAGTC 4 cut(s) 1572, 1803, 1867, 2884
PpsI GAGTC 4 cut(s) 1572, 1803, 1867, 2884
PpuMI RGGWCCY 1 cut(s) 2143
PscI ACATGT 3 cut(s) 2151, 2512, 2721
Psp5II RGGWCCY 1 cut(s) 2143
PspEI GGTNACC 1 cut(s) 2498
PspN4I GGNNCC 8 cut(s) 211, 355, 521, 790, 867, 1462, 1606, 2818
PspPI GGNCC 3 cut(s) 789, 1605, 2143
PspPPI RGGWCCY 1 cut(s) 2143
PsrI GAACNNNNNNTAC 2 cut(s) 1697, 1729
PstI CTGCAG 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 1796
PsuI RGATCY 5 cut(s) 209, 256, 501, 1357, 2232
PvuI CGATCG 1 cut(s) 2457
RsaI GTAC 3 cut(s) 1715, 1752, 2099
RsaNI GTAC 3 cut(s) 1714, 1751, 2098
RseI CAYNNNNRTG 3 cut(s) 1089, 1290, 2751
SalI GTCGAC 1 cut(s) 153
SatI GCNGC 3 cut(s) 1312, 2169, 2266
Sau96I GGNCC 3 cut(s) 789, 1605, 2143
SchI GAGTC 4 cut(s) 1573, 1803, 1868, 2884
ScrFI CCNGG 4 cut(s) 92, 1237, 1915, 2162
SduI GDGCHC 2 cut(s) 194, 2869
SfaNI GCATC 6 cut(s) 1040, 1107, 1179, 1323, 2338, 2972
SfcI CTRYAG 3 cut(s) 148, 546, 2665
Sfr274I CTCGAG 1 cut(s) 533
SinI GGWCC 2 cut(s) 1605, 2143
SlaI CTCGAG 1 cut(s) 533
SmiMI CAYNNNNRTG 3 cut(s) 1089, 1290, 2751
SmlI CTYRAG 5 cut(s) 244, 533, 946, 1694, 2471
SmoI CTYRAG 5 cut(s) 244, 533, 946, 1694, 2471
SsiI CCGC 4 cut(s) 1029, 1761, 1815, 2265
StyD4I CCNGG 4 cut(s) 90, 1235, 1913, 2160
StyI CCWWGG 2 cut(s) 797, 1327
TaiI ACGT 1 cut(s) 1025
TaqI TCGA 7 cut(s) 24, 154, 261, 534, 999, 1642, 1834
TatI WGTACW 1 cut(s) 2097
TauI GCSGC 1 cut(s) 2268
TfiI GAWTC 9 cut(s) 113, 775, 1117, 1639, 1699, 2106, 2740, 2795, 2927
TscAI CASTG 5 cut(s) 742, 2100, 2719, 2836, 2959
TseFI GTSAC 7 cut(s) 94, 142, 172, 941, 1337, 2498, 2827
TseI GCWGC 2 cut(s) 1311, 2168
Tsp45I GTSAC 7 cut(s) 94, 142, 172, 941, 1337, 2498, 2827
TspGWI ACGGA 2 cut(s) 53, 389
TspRI CASTG 5 cut(s) 742, 2100, 2719, 2836, 2959
Van91I CCANNNNNTGG 3 cut(s) 798, 2339, 2627
Vha464I CTTAAG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 1605, 2143
XapI RAATTY 4 cut(s) 429, 871, 1261, 2370
XbaI TCTAGA 3 cut(s) 196, 1567, 2567
XceI RCATGY 5 cut(s) 2155, 2247, 2516, 2725, 2919
XhoI CTCGAG 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 1327
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.